mRNA_M-pyrifera_M_contig127812.5611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127812.5611.1
Unique NamemRNA_M-pyrifera_M_contig127812.5611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: A0A2E0RSS9_9ACTN (Transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RSS9_9ACTN)

HSP 1 Score: 233 bits (594), Expect = 1.490e-76
Identity = 108/149 (72.48%), Postives = 122/149 (81.88%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MRK SFA+MNCSIAQ LE+VGEWWTLL+LRD FLG+RRFDDFV+RLGISRNVLTDRL+KLVAAEIL R PYDEGR RYDYVLT KGR LWPV++TLREWGD W+ G GNEP+++EHR CG VT+ R  C  C   L+A  V    GPGA
Sbjct:    1 MRKVSFADMNCSIAQALEIVGEWWTLLILRDCFLGIRRFDDFVERLGISRNVLTDRLDKLVAAEILERRPYDEGRLRYDYVLTPKGRALWPVITTLREWGDEWLTGAGNEPVLIEHRVCGNVTHTRLVCDCCGERLEARDVRAVAGPGA 149          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: A0A4R7HY99_9ACTN (HxlR family transcriptional regulator n=2 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HY99_9ACTN)

HSP 1 Score: 231 bits (588), Expect = 1.350e-75
Identity = 107/149 (71.81%), Postives = 120/149 (80.54%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MRK SFA+MNCSIAQ LE+VGEWWTLL+LRD FLGVRRFDDFV+RLGISRNVLTDRL+KLVAA++L R  YDEGR RYDYVLT KG+ LWPV++TLREWGD WI GEGNEP++LEHR CG VT+ R  C  C   L    V    GPGA
Sbjct:    5 MRKVSFADMNCSIAQALEIVGEWWTLLILRDCFLGVRRFDDFVERLGISRNVLTDRLDKLVAADVLERRTYDEGRLRYDYVLTPKGKALWPVITTLREWGDEWITGEGNEPILLEHRTCGNVTHTRLVCDCCGETLHGRDVRAIEGPGA 153          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: UPI001F0EB848 (helix-turn-helix transcriptional regulator n=1 Tax=Gordonia sp. ABSL49_1 TaxID=2920941 RepID=UPI001F0EB848)

HSP 1 Score: 192 bits (489), Expect = 1.820e-60
Identity = 85/149 (57.05%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+ASFA+MNCS+AQ+LE++GEWWTLL++RD F GV RFD F +RLGI+RNVLT RLE LV   +L +EPY +   RYDY LTEKGRDLW VL+ LR+WGD+W   +G  P+V  HRDCG++T +   C+ C   +   S+ +  GPGA
Sbjct:    1 MRRASFADMNCSVAQSLEIIGEWWTLLIIRDAFFGVTRFDAFSERLGIARNVLTQRLETLVEHGVLTKEPYQDKPVRYDYRLTEKGRDLWTVLTALRQWGDKWAAPDG-APVVARHRDCGQITTIEPVCSECGEPVTRASLSLHQGPGA 148          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: A0A1B9R920_9ACTN (HxlR family transcriptional regulator n=11 Tax=Gordonia TaxID=2053 RepID=A0A1B9R920_9ACTN)

HSP 1 Score: 192 bits (487), Expect = 3.550e-60
Identity = 90/149 (60.40%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+ASFAEMNCSIAQTLE+VGEWWTLL++RD   GV RFD+F  RLGI+RNVLT RL+ LV  EILA+EPY +   RYDY LTEKGRDLW VL+ LR+WGDRW   +G  P+V  H  CG+   +  TC++C   +  G + + PGPGA
Sbjct:    1 MRRASFAEMNCSIAQTLEIVGEWWTLLIVRDAMFGVTRFDEFSSRLGIARNVLTQRLDTLVEHEILAKEPYQDNPVRYDYRLTEKGRDLWTVLAALRQWGDRWTAEDG-APVVSTH-SCGQTMTVEPTCSACGERIGTGELRVHPGPGA 147          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: D0LC94_GORB4 (Helix-turn-helix HxlR type n=2 Tax=Gordonia bronchialis TaxID=2054 RepID=D0LC94_GORB4)

HSP 1 Score: 192 bits (487), Expect = 3.550e-60
Identity = 86/149 (57.72%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+ASF++MNCS+AQ+LE+VGEWWTLL++RD F+GV RFD F +RLGI+RNVLT RLE LV   +  +EPY +   RYDY LTEKGRDLW VL+ LR+WGD+W    G  P+V  HRDCG+VT L+  C+ C   +   S+ +  GPGA
Sbjct:    1 MRRASFSDMNCSVAQSLEIVGEWWTLLIIRDAFIGVTRFDAFSERLGIARNVLTQRLETLVEHGVFTKEPYQDKPVRYDYRLTEKGRDLWLVLTALRQWGDKWA-APGGAPVVATHRDCGQVTTLQPVCSECGEPVTRASLALHRGPGA 148          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: A0A7V8WZD4_9ACTN (Helix-turn-helix transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WZD4_9ACTN)

HSP 1 Score: 192 bits (487), Expect = 4.450e-60
Identity = 84/148 (56.76%), Postives = 107/148 (72.30%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPG 444
            MR+ SF +M CS+A++LE++GEWWTLL++RD F GV RF++F DRLGI+RNVL  RL+ LVA  +L R PYDE R RYDYVLT+KG+ LWPVL T+R+WGD W+LG GNEP+ L H  CG  +     C  C   +    V +RPGPG
Sbjct:    1 MRRTSFEDMTCSVARSLEVIGEWWTLLIVRDAFFGVTRFEEFQDRLGIARNVLATRLDTLVAHGVLERRPYDEARSRYDYVLTDKGKALWPVLVTIRQWGDEWVLGAGNEPVHLVHTTCGHRSAAVLHCDHCGEAIHRRDVRVRPGPG 148          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: K6WZA3_9ACTN (Putative HxlR family transcriptional regulator n=2 Tax=Gordonia rhizosphera TaxID=83341 RepID=K6WZA3_9ACTN)

HSP 1 Score: 191 bits (485), Expect = 1.320e-59
Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+ASF +MNCSIAQTLE+VGEWWTLL++RD  LGV RFD+F  RLGI+RNVLT RL+ LVA  +L +EPY +   RYDY LTEKGRDLW V++ LR+WGD+W   E   P++  HR CG+       C+ C   +  GS+ +RPGPGA
Sbjct:   20 MRRASFTDMNCSIAQTLEIVGEWWTLLIIRDALLGVTRFDEFSSRLGIARNVLTQRLDMLVAHGVLTKEPYQDKPVRYDYRLTEKGRDLWTVITALRQWGDKWT-AENGAPVITIHRSCGKEMTAELVCSECREPIGPGSLRVRPGPGA 167          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: A0A2E1GC74_9ACTN (Transcriptional regulator n=3 Tax=Gordonia TaxID=2053 RepID=A0A2E1GC74_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 4.540e-59
Identity = 86/149 (57.72%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+ASF +MNCS+AQTLE+VGEWWTLL++RD   GV RFDDF  RLGI+RNVLT RL+ LV   ++AREPY E   RYDY LTEKGRDLW VL+ LR+WGDRW + +   P+V EHR CG    +   C++C   +    + + PGPGA
Sbjct:    1 MRRASFTDMNCSVAQTLEIVGEWWTLLIVRDALFGVTRFDDFSTRLGIARNVLTQRLDTLVEHGVMAREPYQEKPVRYDYRLTEKGRDLWTVLAALRQWGDRWAI-DSEPPIVTEHRACGHTMTVEPVCSACGEHVTRSDLRVLPGPGA 148          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: H6N172_GORPV (Transcriptional regulator, HxlR family n=5 Tax=Gordonia TaxID=2053 RepID=H6N172_GORPV)

HSP 1 Score: 188 bits (478), Expect = 8.300e-59
Identity = 87/149 (58.39%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+ASF+ MNCS+AQTLE+VGEWWTLL++RD   GV RFDDF  RLGI+RNVLT RL+ LV   IL R+PY +   RYDY LT+KGRDLW V++ LR+WGD+W   +G  P+ L H  CG  T L   C+ C   +D GSV +R GPGA
Sbjct:    1 MRRASFSGMNCSVAQTLEVVGEWWTLLIIRDALFGVTRFDDFSTRLGIARNVLTQRLDTLVEHGILIRDPYQDNPVRYDYRLTDKGRDLWTVINALRQWGDKWSAPDG-APVELVHTGCGHTTTLEPVCSECGEHVDRGSVTVRLGPGA 148          
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Match: UPI001655685E (helix-turn-helix transcriptional regulator n=1 Tax=Gordonia sp. OPL2 TaxID=2486274 RepID=UPI001655685E)

HSP 1 Score: 183 bits (464), Expect = 1.190e-56
Identity = 80/149 (53.69%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISRNVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWGDRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA 447
            MR+A+F +MNCS+AQTLE++GEWWTLL++RD   GV RFD+F  RLGI+RNVLT RL+ LV   ++ +EPY +   RYDY LT+KGRDLW VLS LR+WGD+W + +G  P+V  HR CG    +   C+ C   + +GS+ +  GPGA
Sbjct:    1 MRRATFTDMNCSVAQTLEIIGEWWTLLIIRDALFGVTRFDEFSTRLGIARNVLTQRLDTLVEHGVMVKEPYQDKPVRYDYRLTDKGRDLWTVLSALRQWGDKWAV-DGPPPVVTSHRSCGHTMTVEPVCSECGERVTSGSLRIHRGPGA 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127812.5611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0RSS9_9ACTN1.490e-7672.48Transcriptional regulator n=1 Tax=Acidimicrobiacea... [more]
A0A4R7HY99_9ACTN1.350e-7571.81HxlR family transcriptional regulator n=2 Tax=Ilum... [more]
UPI001F0EB8481.820e-6057.05helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A1B9R920_9ACTN3.550e-6060.40HxlR family transcriptional regulator n=11 Tax=Gor... [more]
D0LC94_GORB43.550e-6057.72Helix-turn-helix HxlR type n=2 Tax=Gordonia bronch... [more]
A0A7V8WZD4_9ACTN4.450e-6056.76Helix-turn-helix transcriptional regulator n=1 Tax... [more]
K6WZA3_9ACTN1.320e-5957.72Putative HxlR family transcriptional regulator n=2... [more]
A0A2E1GC74_9ACTN4.540e-5957.72Transcriptional regulator n=3 Tax=Gordonia TaxID=2... [more]
H6N172_GORPV8.300e-5958.39Transcriptional regulator, HxlR family n=5 Tax=Gor... [more]
UPI001655685E1.190e-5653.69helix-turn-helix transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127812contigM-pyrifera_M_contig127812:50..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score189.5
Seed ortholog evalue1.1e-45
Seed eggNOG ortholog526226.Gbro_0274
Hectar predicted targeting categoryother localisation
EggNOG free text desc.HxlR-like helix-turn-helix
EggNOG OGs2GMQG@201174,4GDVW@85026,COG1733@1,COG1733@2
COG Functional cat.K
Best tax levelGordoniaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size450
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.6308758-CDS-M-pyrifera_M_contig127812:49..4991622815792.6308758-CDS-M-pyrifera_M_contig127812:49..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127812 50..499 -
1692277571.8867936-CDS-M-pyrifera_M_contig127812:49..4991692277571.8867936-CDS-M-pyrifera_M_contig127812:49..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127812 50..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127812.5611.1prot_M-pyrifera_M_contig127812.5611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127812 50..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127812.5611.1

>prot_M-pyrifera_M_contig127812.5611.1 ID=prot_M-pyrifera_M_contig127812.5611.1|Name=mRNA_M-pyrifera_M_contig127812.5611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MRKASFAEMNCSIAQTLELVGEWWTLLVLRDVFLGVRRFDDFVDRLGISR
NVLTDRLEKLVAAEILAREPYDEGRGRYDYVLTEKGRDLWPVLSTLREWG
DRWILGEGNEPMVLEHRDCGEVTNLRHTCASCEAVLDAGSVVMRPGPGA*
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mRNA from alignment at M-pyrifera_M_contig127812:50..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127812.5611.1 ID=mRNA_M-pyrifera_M_contig127812.5611.1|Name=mRNA_M-pyrifera_M_contig127812.5611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig127812:50..499- (Macrocystis pyrifera P11B4 male)
ATGCGCAAAGCCTCCTTCGCCGAGATGAACTGCTCGATCGCACAGACGCT CGAACTCGTGGGCGAGTGGTGGACCCTGCTGGTTCTGCGCGATGTGTTCC TCGGCGTGCGTCGCTTCGACGACTTCGTGGATCGACTCGGAATCTCTCGC AACGTGTTGACGGACCGGCTCGAGAAGCTCGTGGCGGCCGAGATCCTCGC CCGCGAGCCCTACGACGAGGGACGCGGCCGCTACGACTATGTGTTGACCG AGAAGGGGCGTGACCTCTGGCCGGTGTTGAGCACCCTGCGCGAATGGGGC GACCGCTGGATCCTGGGCGAGGGCAACGAGCCCATGGTCCTCGAGCACCG CGACTGTGGTGAGGTGACGAACCTGCGACACACCTGCGCGAGCTGCGAAG CGGTGCTCGACGCCGGCTCGGTCGTGATGCGGCCCGGGCCCGGCGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127812:50..499-

>mRNA_M-pyrifera_M_contig127812.5611.1 ID=mRNA_M-pyrifera_M_contig127812.5611.1|Name=mRNA_M-pyrifera_M_contig127812.5611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig127812:50..499- (Macrocystis pyrifera P11B4 male)
ATGCGCAAAGCCTCCTTCGCCGAGATGAACTGCTCGATCGCACAGACGCT
CGAACTCGTGGGCGAGTGGTGGACCCTGCTGGTTCTGCGCGATGTGTTCC
TCGGCGTGCGTCGCTTCGACGACTTCGTGGATCGACTCGGAATCTCTCGC
AACGTGTTGACGGACCGGCTCGAGAAGCTCGTGGCGGCCGAGATCCTCGC
CCGCGAGCCCTACGACGAGGGACGCGGCCGCTACGACTATGTGTTGACCG
AGAAGGGGCGTGACCTCTGGCCGGTGTTGAGCACCCTGCGCGAATGGGGC
GACCGCTGGATCCTGGGCGAGGGCAACGAGCCCATGGTCCTCGAGCACCG
CGACTGTGGTGAGGTGACGAACCTGCGACACACCTGCGCGAGCTGCGAAG
CGGTGCTCGACGCCGGCTCGGTCGTGATGCGGCCCGGGCCCGGCGCCTGA
ATGCGCAAAGCCTCCTTCGCCGAGATGAACTGCTCGATCGCACAGACGCT
CGAACTCGTGGGCGAGTGGTGGACCCTGCTGGTTCTGCGCGATGTGTTCC
TCGGCGTGCGTCGCTTCGACGACTTCGTGGATCGACTCGGAATCTCTCGC
AACGTGTTGACGGACCGGCTCGAGAAGCTCGTGGCGGCCGAGATCCTCGC
CCGCGAGCCCTACGACGAGGGACGCGGCCGCTACGACTATGTGTTGACCG
AGAAGGGGCGTGACCTCTGGCCGGTGTTGAGCACCCTGCGCGAATGGGGC
GACCGCTGGATCCTGGGCGAGGGCAACGAGCCCATGGTCCTCGAGCACCG
CGACTGTGGTGAGGTGACGAACCTGCGACACACCTGCGCGAGCTGCGAAG
CGGTGCTCGACGCCGGCTCGGTCGTGATGCGGCCCGGGCCCGGCGCCTGA
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