mRNA_M-pyrifera_M_contig127810.5610.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127810.5610.1
Unique NamemRNA_M-pyrifera_M_contig127810.5610.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127810.5610.1 vs. uniprot
Match: A0A5A8DL26_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DL26_CAFRO)

HSP 1 Score: 102 bits (253), Expect = 1.670e-23
Identity = 63/142 (44.37%), Postives = 77/142 (54.23%), Query Frame = 1 
Query:   43 GVICDYEPASNYTMEHAELYGAFLEALG-----------GVAHAKGMTVGFDIAGWGILD--FWSAYVNRGIDFWPSMTPTYFGTNLTRNEAFVKSALAAGVPGGEKGVGFGLSAGFGTMLQPGCKGMN-DYNWTQPKLEAF 426
            G+I DYEP++NY+  HAE YG FLEALG           G    + M  G D AGWGILD  FW AY    +  + SM+PTY G +L ++EAF KSALA  +P     V FGL    GT L   C      Y+WT+  L  F
Sbjct:  107 GLIVDYEPSTNYSQAHAEAYGRFLEALGEALRNTSAAGAGGGSQREMRAGMDFAGWGILDQPFWHAYAAASLGRYTSMSPTYSGADLLKDEAFAKSALAGPLPA--HAVAFGL----GTELDSKCPPPKWQYHWTEAPLRKF 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127810.5610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DL26_CAFRO1.670e-2344.37Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127810contigM-pyrifera_M_contig127810:7..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue6.1e-20
Seed eggNOG ortholog227086.JGI_V11_86553
Hectar predicted targeting categoryother localisation
EggNOG OGs2CC1U@1,2SWKW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.5965354-CDS-M-pyrifera_M_contig127810:6..4441622815792.5965354-CDS-M-pyrifera_M_contig127810:6..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127810 7..444 -
1692277571.8748028-CDS-M-pyrifera_M_contig127810:6..4441692277571.8748028-CDS-M-pyrifera_M_contig127810:6..444Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127810 7..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127810.5610.1prot_M-pyrifera_M_contig127810.5610.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127810 7..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127810.5610.1

>prot_M-pyrifera_M_contig127810.5610.1 ID=prot_M-pyrifera_M_contig127810.5610.1|Name=mRNA_M-pyrifera_M_contig127810.5610.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
IADLVGLVGQAGVDGVICDYEPASNYTMEHAELYGAFLEALGGVAHAKGM
TVGFDIAGWGILDFWSAYVNRGIDFWPSMTPTYFGTNLTRNEAFVKSALA
AGVPGGEKGVGFGLSAGFGTMLQPGCKGMNDYNWTQPKLEAFTDFL
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mRNA from alignment at M-pyrifera_M_contig127810:7..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127810.5610.1 ID=mRNA_M-pyrifera_M_contig127810.5610.1|Name=mRNA_M-pyrifera_M_contig127810.5610.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig127810:7..444- (Macrocystis pyrifera P11B4 male)
ATCGCAGATTTGGTGGGGTTGGTGGGACAAGCGGGTGTGGATGGGGTGAT
TTGCGACTATGAGCCTGCGTCGAACTACACGATGGAGCATGCCGAGTTGT
ACGGCGCGTTTTTGGAGGCGTTGGGTGGGGTCGCACATGCGAAAGGGATG
ACGGTAGGGTTCGACATTGCCGGTTGGGGAATTTTGGATTTCTGGAGCGC
TTACGTGAACCGAGGCATCGACTTTTGGCCGTCCATGACCCCGACCTACT
TTGGCACCAACCTGACTCGAAATGAGGCATTTGTCAAGAGCGCACTTGCA
GCAGGGGTGCCCGGTGGGGAGAAAGGCGTCGGGTTTGGCCTCTCTGCAGG
GTTTGGGACCATGCTGCAGCCAGGGTGTAAGGGAATGAACGACTACAACT
GGACGCAGCCCAAGTTGGAGGCCTTCACAGACTTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127810:7..444-

>mRNA_M-pyrifera_M_contig127810.5610.1 ID=mRNA_M-pyrifera_M_contig127810.5610.1|Name=mRNA_M-pyrifera_M_contig127810.5610.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig127810:7..444- (Macrocystis pyrifera P11B4 male)
ATCGCAGATTTGGTGGGGTTGGTGGGACAAGCGGGTGTGGATGGGGTGAT
TTGCGACTATGAGCCTGCGTCGAACTACACGATGGAGCATGCCGAGTTGT
ACGGCGCGTTTTTGGAGGCGTTGGGTGGGGTCGCACATGCGAAAGGGATG
ACGGTAGGGTTCGACATTGCCGGTTGGGGAATTTTGGATTTCTGGAGCGC
TTACGTGAACCGAGGCATCGACTTTTGGCCGTCCATGACCCCGACCTACT
TTGGCACCAACCTGACTCGAAATGAGGCATTTGTCAAGAGCGCACTTGCA
GCAGGGGTGCCCGGTGGGGAGAAAGGCGTCGGGTTTGGCCTCTCTGCAGG
GTTTGGGACCATGCTGCAGCCAGGGTGTAAGGGAATGAACGACTACAACT
GGACGCAGCCCAAGTTGGAGGCCTTCACAGACTTCCTCATCGCAGATTTG
GTGGGGTTGGTGGGACAAGCGGGTGTGGATGGGGTGATTTGCGACTATGA
GCCTGCGTCGAACTACACGATGGAGCATGCCGAGTTGTACGGCGCGTTTT
TGGAGGCGTTGGGTGGGGTCGCACATGCGAAAGGGATGACGGTAGGGTTC
GACATTGCCGGTTGGGGAATTTTGGATTTCTGGAGCGCTTACGTGAACCG
AGGCATCGACTTTTGGCCGTCCATGACCCCGACCTACTTTGGCACCAACC
TGACTCGAAATGAGGCATTTGTCAAGAGCGCACTTGCAGCAGGGGTGCCC
GGTGGGGAGAAAGGCGTCGGGTTTGGCCTCTCTGCAGGGTTTGGGACCAT
GCTGCAGCCAGGGTGTAAGGGAATGAACGACTACAACTGGACGCAGCCCA
AGTTGGAGGCCTTCACAGACTTCCTC
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