mRNA_M-pyrifera_M_contig127808.5609.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127808.5609.1
Unique NamemRNA_M-pyrifera_M_contig127808.5609.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127808.5609.1 vs. uniprot
Match: A0A517PQH8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PQH8_9PLAN)

HSP 1 Score: 232 bits (591), Expect = 5.010e-77
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1 
Query:    1 LREVTSILVMMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWKQGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLIDLNLLLMISFLSLVFFFLPFLRAFR 360
            LREVTSILVMMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWKQGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLI LNLLLMISFLSLVFFFLPFLRAFR
Sbjct:    3 LREVTSILVMMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWKQGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLIGLNLLLMISFLSLVFFFLPFLRAFR 122
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BLAST of mRNA_M-pyrifera_M_contig127808.5609.1 vs. uniprot
Match: A0A5A8B9K5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8B9K5_9PLAN)

HSP 1 Score: 198 bits (504), Expect = 9.270e-64
Identity = 97/117 (82.91%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:    1 LREVTSILVMMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWKQGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLIDLNLLLMISFLSLVFFFLPFLR 351
            LRE+  IL+ +LI+L+LLSPLIAY++YK+KQAQGKCCPSCGTPL PFQHP SKTIQQWKQGGYRCRNCGCLTDLDAK+IPDGPYPKRRTLLLVLI LNLLLMISFLSLVFF+  +L 
Sbjct:    3 LREIIFILLRLLILLMLLSPLIAYIIYKIKQAQGKCCPSCGTPLFPFQHPVSKTIQQWKQGGYRCRNCGCLTDLDAKKIPDGPYPKRRTLLLVLIGLNLLLMISFLSLVFFYFHYLN 119
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BLAST of mRNA_M-pyrifera_M_contig127808.5609.1 vs. uniprot
Match: A0A2E7KG53_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KG53_9PLAN)

HSP 1 Score: 188 bits (477), Expect = 1.210e-59
Identity = 91/117 (77.78%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 LREVTSILVMMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWKQGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLIDLNLLLMISFLSLVFFFLPFLR 351
            LRE+TSILVMMLI+L+LLSPLIAY++YK+KQAQGKCCPSCGTPL PFQHP SKTIQQWKQGGYRCRNCGCLTDL+AK+IPDGPYPKR TLLLV+  LNL+ +  FL L+ F+L +L+
Sbjct:    3 LREITSILVMMLILLMLLSPLIAYIIYKIKQAQGKCCPSCGTPLFPFQHPVSKTIQQWKQGGYRCRNCGCLTDLNAKQIPDGPYPKRSTLLLVMGALNLIPLFCFLLLILFYLFYLK 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig127808.5609.1 vs. uniprot
Match: A0A517Q8W0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q8W0_9PLAN)

HSP 1 Score: 163 bits (413), Expect = 6.820e-50
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    4 REVTSILVMMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWKQGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLIDLNLLLMISFL 318
            RE+   L+  LIMLIL SPLIAYL YKVKQA+GK CPSCGTPL PFQHPASKT+QQWK+GGYRCRNCGCLTDL+A EIP+G YPKRRTLL+VL  LNL+ M+ FL
Sbjct:    4 REMIHTLLTFLIMLILFSPLIAYLFYKVKQARGKFCPSCGTPLSPFQHPASKTVQQWKEGGYRCRNCGCLTDLNANEIPEGSYPKRRTLLMVLAVLNLIPMLCFL 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127808.5609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A517PQH8_9PLAN5.010e-7799.17Uncharacterized protein n=2 Tax=Gimesia chilikensi... [more]
A0A5A8B9K5_9PLAN9.270e-6482.91Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A2E7KG53_9PLAN1.210e-5977.78Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517Q8W0_9PLAN6.820e-5076.19Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127808contigM-pyrifera_M_contig127808:140..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size363
Cds size336
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.5473335-CDS-M-pyrifera_M_contig127808:139..4751622815792.5473335-CDS-M-pyrifera_M_contig127808:139..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127808 140..475 -
1692277571.857315-CDS-M-pyrifera_M_contig127808:139..4751692277571.857315-CDS-M-pyrifera_M_contig127808:139..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127808 140..475 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.560402-UTR-M-pyrifera_M_contig127808:475..5021622815792.560402-UTR-M-pyrifera_M_contig127808:475..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127808 476..502 -
1692277571.8654037-UTR-M-pyrifera_M_contig127808:475..5021692277571.8654037-UTR-M-pyrifera_M_contig127808:475..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127808 476..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127808.5609.1prot_M-pyrifera_M_contig127808.5609.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127808 140..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127808.5609.1

>prot_M-pyrifera_M_contig127808.5609.1 ID=prot_M-pyrifera_M_contig127808.5609.1|Name=mRNA_M-pyrifera_M_contig127808.5609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MMLIMLILLSPLIAYLLYKVKQAQGKCCPSCGTPLIPFQHPASKTIQQWK
QGGYRCRNCGCLTDLDAKEIPDGPYPKRRTLLLVLIDLNLLLMISFLSLV
FFFLPFLRAFR*
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mRNA from alignment at M-pyrifera_M_contig127808:140..502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127808.5609.1 ID=mRNA_M-pyrifera_M_contig127808.5609.1|Name=mRNA_M-pyrifera_M_contig127808.5609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig127808:140..502- (Macrocystis pyrifera P11B4 male)
CTAAGGGAAGTAACTTCCATCCTCGTGATGATGTTGATAATGCTGATATT
GCTCTCCCCCTTGATTGCTTATCTTTTGTACAAGGTCAAACAAGCCCAGG
GGAAATGCTGTCCTTCCTGCGGCACACCATTGATCCCCTTTCAACATCCC
GCTTCTAAAACCATCCAACAGTGGAAACAGGGCGGCTATCGCTGTCGCAA
TTGTGGGTGCCTGACAGATCTTGATGCCAAAGAAATACCAGATGGTCCCT
ATCCGAAACGTCGCACGCTCCTCCTGGTTTTGATAGACCTTAACCTGCTC
CTGATGATATCTTTCCTGTCGCTGGTTTTCTTCTTTCTGCCATTTTTGAG
AGCATTCCGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127808:140..502-

>mRNA_M-pyrifera_M_contig127808.5609.1 ID=mRNA_M-pyrifera_M_contig127808.5609.1|Name=mRNA_M-pyrifera_M_contig127808.5609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig127808:140..502- (Macrocystis pyrifera P11B4 male)
ATGATGTTGATAATGCTGATATTGCTCTCCCCCTTGATTGCTTATCTTTT
GTACAAGGTCAAACAAGCCCAGGGGAAATGCTGTCCTTCCTGCGGCACAC
CATTGATCCCCTTTCAACATCCCGCTTCTAAAACCATCCAACAGTGGAAA
CAGGGCGGCTATCGCTGTCGCAATTGTGGGTGCCTGACAGATCTTGATGC
CAAAGAAATACCAGATGGTCCCTATCCGAAACGTCGCACGCTCCTCCTGG
TTTTGATAGACCTTAACCTGCTCCTGATGATATCTTTCCTGTCGCTGGTT
TTCTTCTTTCTGCCATTTTTGAGAGCATTCCGTTAAATGATGTTGATAAT
GCTGATATTGCTCTCCCCCTTGATTGCTTATCTTTTGTACAAGGTCAAAC
AAGCCCAGGGGAAATGCTGTCCTTCCTGCGGCACACCATTGATCCCCTTT
CAACATCCCGCTTCTAAAACCATCCAACAGTGGAAACAGGGCGGCTATCG
CTGTCGCAATTGTGGGTGCCTGACAGATCTTGATGCCAAAGAAATACCAG
ATGGTCCCTATCCGAAACGTCGCACGCTCCTCCTGGTTTTGATAGACCTT
AACCTGCTCCTGATGATATCTTTCCTGTCGCTGGTTTTCTTCTTTCTGCC
ATTTTTGAGAGCATTCCGTTAA
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