mRNA_M-pyrifera_M_contig127789.5604.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127789.5604.1
Unique NamemRNA_M-pyrifera_M_contig127789.5604.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: A0A2P6TV70_CHLSO (Kelch repeat n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TV70_CHLSO)

HSP 1 Score: 93.2 bits (230), Expect = 4.650e-20
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    4 RGYHTATFAPHTGKVYVWGGIHDGESIGCLEVINPQTWTLRRPATRGISPRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            RGYH+A  +    K+YV+GGI    +   L V++  TW   RP T G  P PR GH++   G  LW++GGGSG D+LR G+D  D   LDL T+ W
Sbjct:  313 RGYHSAAASEDGTKLYVFGGISATGACNTLAVLDLHTWEWSRPHTHGAPPSPRCGHSSFVHGNRLWVVGGGSGRDLLRSGRDLADAHCLDLTTMEW 408          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: E1ZAF5_CHLVA (F-box domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZAF5_CHLVA)

HSP 1 Score: 84.0 bits (206), Expect = 8.070e-17
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 1
Query:    4 RGYHTATFAPHTGKVYVWGGIHDGESIGCLEVINPQTWTLRRPATRGISPRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            RGYH+A  +    +++ +GGI +  +   L V++  TW    P T G  P  R GH++   G  LW++GGGSG D+LR G+D  D+  LDL T+ W
Sbjct:  391 RGYHSAAASEDGRQIWYFGGIAERGASSSLAVLDVATWQFSCPVTSGDPPPLRLGHSSCVHGGRLWVVGGGSGRDLLRSGRDLADVYCLDLGTMEW 486          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: A0A2P6VG52_9CHLO (Repetin isoform B n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG52_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 7.920e-14
Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1
Query:   43 KVYVWGGIHDGESIGCLEVINPQTWTLRRPA--TRGISPRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            K+Y +GGI    +   L V++ +TWT  R    T G  P  R GH++   G  LW++GGG+G D+LR G+D  D+  LDL+T  W
Sbjct: 1114 KIYFFGGIGPASASATLAVLDVETWTFSRSRLDTSGAPPCARLGHSSCVYGGRLWVVGGGTGRDLLRTGRDLGDVHCLDLETREW 1198          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: A0A367J6B2_RHIAZ (Negative regulator of mitotic exit n=4 Tax=Rhizopus TaxID=4842 RepID=A0A367J6B2_RHIAZ)

HSP 1 Score: 62.4 bits (150), Expect = 3.090e-9
Identity = 36/102 (35.29%), Postives = 50/102 (49.02%), Query Frame = 1
Query:    1 PRGYHTATFAPHTGKVYVWGGIHDGESIGCLEVINPQTWTLRR-----PATRGISPRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            PRG    T + H GK+YVWGG H G+ +  L + + + +  +      P+T G +P PR GH +V     L+I GG      +     Y DI  LDL T  W
Sbjct:  159 PRGRSGHTISAHNGKMYVWGGQHQGQYLNDLLIFSLKDYPAKAEWEFVPST-GPAPSPRAGHISVVYDNKLYIFGG------INASHLYNDIWCLDLVTRVW 253          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: F2UB51_SALR5 (F-box domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UB51_SALR5)

HSP 1 Score: 59.3 bits (142), Expect = 3.610e-8
Identity = 38/96 (39.58%), Postives = 48/96 (50.00%), Query Frame = 1
Query:   10 YHTATFAP-HTGKVYVWGGIHDGE---SIGCLEVINPQTWTLRRPATRGISPRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTL 285
            YH     P    K+ V GG+HD +   ++G LE     TW     A     P  R+G AA  + + LW+LGG SG DI R G D  D+ ALDL  L
Sbjct:  228 YHFVAPVPTDPSKLVVVGGLHDHDPATTVGLLET-ETFTWIPLVQAPDENRPADRYGFAAGIVDRSLWVLGGCSGSDIRRSGDDQRDVWALDLHVL 322          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: A0A7R9TBJ5_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TBJ5_9VIRI)

HSP 1 Score: 55.1 bits (131), Expect = 9.000e-7
Identity = 41/111 (36.94%), Postives = 53/111 (47.75%), Query Frame = 1
Query:    4 RGYHTATFAPHTGKV-YVWGGIHDGESIGCLEV------INPQTWTLRR------PATRGISPRPRHGHA--AVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            RGYH A  A   G+V YV GGI +G S+ C ++           W  RR          G  P  R GH+    + G+ L ++GGG+GGD+LREG D  D    DL    W
Sbjct:  162 RGYHAAC-ADDIGRVMYVSGGIAEGASLACNDLWALDVGAESGVWQWRRLVGDAGSEVVGEVPPARFGHSMCVTSSGRVL-LVGGGNGGDLLREGGDLHDAWLFDLAESRW 270          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: UPI0006448B22 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448B22)

HSP 1 Score: 52.0 bits (123), Expect = 1.390e-5
Identity = 31/97 (31.96%), Postives = 45/97 (46.39%), Query Frame = 1
Query:    4 RGYHTATFAPHTGKVYVWGGIHDGESIGCLEVINPQTWTLRRPATRGISPRPRHGHAAVAIG-KYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            R  HTA     T  V ++GG     S   + + N + ++  +    GISP PR+GH A A+G KYL + GG        E     D+  LD++   W
Sbjct:  210 RTGHTANHVKGTENVVIFGGYDGKRSFNDIYIFNLRDYSWSKVNAGGISPSPRNGHTANAVGNKYLVVHGG------CNEANFLNDVHILDMERWCW 300          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: A0A2K1JI58_PHYPA (ACB domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JI58_PHYPA)

HSP 1 Score: 51.6 bits (122), Expect = 1.900e-5
Identity = 32/97 (32.99%), Postives = 46/97 (47.42%), Query Frame = 1
Query:    1 PRGYHTATFAPHTGKVYVWGGIHDGESIGCLEVINPQTWTLRRPATRGISPRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW 291
            PR  H AT A     ++V+GG    +    L  ++ +T       T+GISPRPR GHA    G   +I+GGG     + E       + LD+ T +W
Sbjct:  386 PRADHVAT-AYRDKCIFVFGGGSHSDCYNDLHALDLETMEWASVPTKGISPRPRAGHAGATHGDNWFIVGGGDNTGAISE------TLVLDMITQSW 475          
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Match: A0A2G8L673_STIJA (Putative rab9 effector protein with kelch motifs-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L673_STIJA)

HSP 1 Score: 51.2 bits (121), Expect = 2.470e-5
Identity = 25/61 (40.98%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   40 GKVYVWGGIHDGE---SIGCLEVINPQTWTLRRPATRGISPRPRHGHAAVAIGKYLWILGG 213
            G++YV+ G   G    +   L V N ++ T ++P   G  P+PRHGHA VAIG+ L++ GG
Sbjct:  148 GQLYVFSGGEQGTDPVADSKLHVFNSESQTWKQPEVTGQVPKPRHGHATVAIGRKLYLHGG 208          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127789.5604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2P6TV70_CHLSO4.650e-2044.79Kelch repeat n=1 Tax=Chlorella sorokiniana TaxID=3... [more]
E1ZAF5_CHLVA8.070e-1739.58F-box domain-containing protein n=1 Tax=Chlorella ... [more]
A0A2P6VG52_9CHLO7.920e-1441.18Repetin isoform B n=2 Tax=Micractinium conductrix ... [more]
A0A367J6B2_RHIAZ3.090e-935.29Negative regulator of mitotic exit n=4 Tax=Rhizopu... [more]
F2UB51_SALR53.610e-839.58F-box domain-containing protein n=1 Tax=Salpingoec... [more]
A0A7R9TBJ5_9VIRI9.000e-736.94Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
UPI0006448B221.390e-531.96hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2K1JI58_PHYPA1.900e-532.99ACB domain-containing protein n=3 Tax=Physcomitriu... [more]
A0A2G8L673_STIJA2.470e-540.98Putative rab9 effector protein with kelch motifs-l... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127789contigM-pyrifera_M_contig127789:112..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog554065.XP_005849353.1
Preferred nameLZTR1
KEGG rclassRC00382
KEGG koko:K15216,ko:K16474,ko:K20285,ko:K22207
KEGG ReactionR00782
KEGG Pathwayko00270,map00270
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006355,GO:0008150,GO:0009653,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.meiotic cell cycle
EggNOG OGsKOG4693@1,KOG4693@2759
EC4.4.1.28
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03036,ko04131
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815792.352346-CDS-M-pyrifera_M_contig127789:111..4021622815792.352346-CDS-M-pyrifera_M_contig127789:111..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127789 112..402 +
1692277571.7772577-CDS-M-pyrifera_M_contig127789:111..4021692277571.7772577-CDS-M-pyrifera_M_contig127789:111..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127789 112..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127789.5604.1prot_M-pyrifera_M_contig127789.5604.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127789 112..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127789.5604.1

>prot_M-pyrifera_M_contig127789.5604.1 ID=prot_M-pyrifera_M_contig127789.5604.1|Name=mRNA_M-pyrifera_M_contig127789.5604.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
PRGYHTATFAPHTGKVYVWGGIHDGESIGCLEVINPQTWTLRRPATRGIS
PRPRHGHAAVAIGKYLWILGGGSGGDILREGQDYPDIVALDLDTLTW
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mRNA from alignment at M-pyrifera_M_contig127789:112..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127789.5604.1 ID=mRNA_M-pyrifera_M_contig127789.5604.1|Name=mRNA_M-pyrifera_M_contig127789.5604.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig127789:112..402+ (Macrocystis pyrifera P11B4 male)
CCAAGAGGGTACCACACTGCCACTTTCGCACCACATACAGGGAAAGTGTA TGTATGGGGAGGAATTCACGATGGAGAGAGCATAGGGTGTTTGGAAGTCA TCAATCCCCAAACTTGGACTCTCCGAAGACCAGCAACTCGAGGCATTTCT CCTCGTCCCAGACACGGACATGCAGCTGTGGCAATAGGCAAGTACCTGTG GATCCTGGGAGGTGGGAGTGGTGGAGACATCTTGCGAGAAGGACAAGACT ACCCTGACATTGTTGCTCTTGACCTTGACACCCTCACTTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127789:112..402+

>mRNA_M-pyrifera_M_contig127789.5604.1 ID=mRNA_M-pyrifera_M_contig127789.5604.1|Name=mRNA_M-pyrifera_M_contig127789.5604.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig127789:112..402+ (Macrocystis pyrifera P11B4 male)
CCAAGAGGGTACCACACTGCCACTTTCGCACCACATACAGGGAAAGTGTA
TGTATGGGGAGGAATTCACGATGGAGAGAGCATAGGGTGTTTGGAAGTCA
TCAATCCCCAAACTTGGACTCTCCGAAGACCAGCAACTCGAGGCATTTCT
CCTCGTCCCAGACACGGACATGCAGCTGTGGCAATAGGCAAGTACCTGTG
GATCCTGGGAGGTGGGAGTGGTGGAGACATCTTGCGAGAAGGACAAGACT
ACCCTGACATTGTTGCTCTTGACCTTGACACCCTCACTTGGCCAAGAGGG
TACCACACTGCCACTTTCGCACCACATACAGGGAAAGTGTATGTATGGGG
AGGAATTCACGATGGAGAGAGCATAGGGTGTTTGGAAGTCATCAATCCCC
AAACTTGGACTCTCCGAAGACCAGCAACTCGAGGCATTTCTCCTCGTCCC
AGACACGGACATGCAGCTGTGGCAATAGGCAAGTACCTGTGGATCCTGGG
AGGTGGGAGTGGTGGAGACATCTTGCGAGAAGGACAAGACTACCCTGACA
TTGTTGCTCTTGACCTTGACACCCTCACTTGG
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