mRNA_M-pyrifera_M_contig127755.5592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127755.5592.1
Unique NamemRNA_M-pyrifera_M_contig127755.5592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A517X4F7_9PLAN (Type II secretion system protein G n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517X4F7_9PLAN)

HSP 1 Score: 280 bits (716), Expect = 7.040e-93
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 1
Query:    1 VRNAYRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAVAAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            VRNAYRTSYSVLYPWYNM TSYD YND TRKS+FGHNGAAR+RDIQDG S TM MMETPLEKQSALRGPFWSAYVATGAVA GYRKINAPY ATDDRVNWYTPGSEHVGGCH+L  DGAVRFISENIDF+TQKALGSIRGGEVIG+F
Sbjct:  163 VRNAYRTSYSVLYPWYNMSTSYDAYNDNTRKSMFGHNGAARIRDIQDGTSMTMAMMETPLEKQSALRGPFWSAYVATGAVAPGYRKINAPYDATDDRVNWYTPGSEHVGGCHVLFADGAVRFISENIDFNTQKALGSIRGGEVIGDF 309          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A517PGA0_9PLAN (Type II secretion system protein G n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517PGA0_9PLAN)

HSP 1 Score: 225 bits (574), Expect = 2.410e-71
Identity = 108/147 (73.47%), Postives = 124/147 (84.35%), Query Frame = 1
Query:    1 VRNAYRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAVAAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            VRNAYRTSYSV+YP YNMGTSY+ YN    KS FGHNGAAR+RDI+DG SNTM MMETPLEK S LRGPFWSAYVATGAV+  YRK+N   ++T+ RV WY+PGSEHVGGCH+L+ DGAVRF+SEN+DF+ QKAL SI GGEVI +F
Sbjct:  164 VRNAYRTSYSVMYPTYNMGTSYEAYNTKALKSAFGHNGAARIRDIKDGTSNTMIMMETPLEKDSDLRGPFWSAYVATGAVSGSYRKMNQIDTSTN-RVIWYSPGSEHVGGCHVLMGDGAVRFLSENVDFNLQKALSSIGGGEVISDF 309          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A3D3RIH6_9PLAN (Prepilin-type cleavage/methylation domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RIH6_9PLAN)

HSP 1 Score: 192 bits (488), Expect = 3.000e-58
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 1
Query:   13 YRTSYSVLYPWYNMG--TSYDNYNDMTR-KSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAV-AAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            YRTSYS +Y  YN G  +S   Y   T  K+ FGHNGAAR+RD  DG+SN+M M+ETP+EKQSA+RGPFW+ YVATG V AA YRKIN PYSATD R  W +PGSEHVGGCH LL DGAVRFISENID +T +A+ +I GGE++G+F
Sbjct:  171 YRTSYSFIYIEYNTGDNSSGGTYETATTTKTAFGHNGAARMRDFTDGSSNSMLMIETPMEKQSAIRGPFWATYVATGPVIAAPYRKINQPYSATDSRAEWGSPGSEHVGGCHALLGDGAVRFISENIDINTLRAIQTINGGELVGDF 317          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A2E2C7J5_9PLAN (Prepilin-type cleavage/methylation domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C7J5_9PLAN)

HSP 1 Score: 184 bits (466), Expect = 5.410e-55
Identity = 90/144 (62.50%), Postives = 111/144 (77.08%), Query Frame = 1
Query:   13 YRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAV-AAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            YRTSY+ +Y  YN G  Y+  +  T K+ FGHNGAAR+RD  DG SN++ MMETP+EKQS +RGPFW+ YVATG V AA  RKIN PYSATD R  + +PGSEHVGGCH +L DGAVRFISENID +T +A+ +I GGE++G+F
Sbjct:  171 YRTSYAFVYIRYNSGGPYETAS--TVKTAFGHNGAARMRDFSDGTSNSVLMMETPMEKQSYIRGPFWATYVATGPVLAAPTRKINQPYSATDSRAEYGSPGSEHVGGCHTVLGDGAVRFISENIDINTLRAIQTINGGELVGDF 312          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A517V6B0_9PLAN (Type II secretion system protein G n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V6B0_9PLAN)

HSP 1 Score: 183 bits (465), Expect = 7.650e-55
Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 1
Query:   13 YRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAV-AAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            YRTSY+ +Y  Y+ G +Y++ + +  K+ FGHNGAAR+RD  DG SNTM MMETP++K SA+RGPFW+ +VAT A+ AA YRKIN P SAT+  VNW +PGSEHVGGCH L+ DGAVRF++ENID +  +A+ +I GGEV+G+F
Sbjct:  171 YRTSYTFIYLTYSAGVAYESISGI--KTAFGHNGAARMRDFSDGTSNTMVMMETPMQKDSAIRGPFWATWVATAAIIAAPYRKINQPTSATNKLVNWGSPGSEHVGGCHALMGDGAVRFVTENIDINLLRAVQTINGGEVVGDF 312          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A517R8A9_9PLAN (Putative major pilin subunit n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R8A9_9PLAN)

HSP 1 Score: 179 bits (454), Expect = 3.470e-53
Identity = 91/146 (62.33%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    7 NAYRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAV-AAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            N YRTSYSV+Y  Y    SY        K+ FG NGAAR+RD++DG SN+M MMETP+EK S +RGPFW+ YVATGAV AA YRKIN P SAT+    W +PGSEHVGGCH LL DGAVRFISENID +  + + +I G EVIGEF
Sbjct:  169 NDYRTSYSVIYITYGANVSYGA--STGTKTAFGRNGAARMRDVRDGTSNSMLMMETPMEKDSPIRGPFWATYVATGAVIAAPYRKINHPTSATNPIAYWGSPGSEHVGGCHALLGDGAVRFISENIDINLLRGIQTINGSEVIGEF 312          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A517ZZD5_9PLAN (Type II secretion system protein G n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZD5_9PLAN)

HSP 1 Score: 167 bits (424), Expect = 1.120e-48
Identity = 84/144 (58.33%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   13 YRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAV-AAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            YRTSYSV+Y  Y+  T+Y     +  K+ FG NGAAR+RD +DG SN+M  METP+EK S++RGPF +AYV TGAV AA YRKIN P S+T+    W +PGSEHVGGCH LL DGAVRF+SENID +  + + +I G E++GEF
Sbjct:  171 YRTSYSVIYLSYDSTTTYGAMTGV--KTAFGRNGAARIRDFKDGTSNSMLFMETPMEKDSSIRGPFVAAYVTTGAVIAAPYRKINHPTSSTNPVAVWGSPGSEHVGGCHALLADGAVRFLSENIDINLLRGIQTINGNEILGEF 312          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A6I6AD79_9PLAN (DUF1559 domain-containing protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AD79_9PLAN)

HSP 1 Score: 160 bits (406), Expect = 5.650e-46
Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
Query:   13 YRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAV-AAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            YRTSYSV+Y  Y+   +Y     +   + FG NGAAR+RD +DG SN+M + ETP+EK S++RGPF +AYV TGAV AA YRKIN P SAT+    W +PGSEH GGCH LL DGAVRF+SENID +  + + +I G E++GEF
Sbjct:  171 YRTSYSVIYIAYDSTITYGAATGVN--TAFGRNGAARVRDFKDGMSNSMLLSETPMEKDSSIRGPFVAAYVTTGAVIAAPYRKINQPTSATNALTVWGSPGSEHTGGCHALLADGAVRFLSENIDINLLRGIQTINGSEILGEF 312          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A3E0PSX3_9BACT (DUF1559 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PSX3_9BACT)

HSP 1 Score: 139 bits (351), Expect = 7.680e-38
Identity = 71/147 (48.30%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    1 VRNAYRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAVAAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            + + Y T+Y+ +   YN+G  Y      TR + FG NGA  + DI DG +NTM M+ETP EK S +RGP+WSA V T  +    R+IN   +AT  RV W +PGSEH GGCH++L DG+VRF+SE++DF  Q  L ++ G EV+GEF
Sbjct:  159 ITDGYLTNYAFVETAYNIGVPYTAEGQRTR-AAFGKNGACSIDDITDGTTNTMLMIETPKEKDSTIRGPYWSADVNTAEIIPKTRRINQIDTATG-RVIWGSPGSEHEGGCHVVLGDGSVRFLSESLDFIVQNYLVTVAGKEVVGEF 303          
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Match: A0A7C2K1Q3_9PLAN (DUF1559 domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2K1Q3_9PLAN)

HSP 1 Score: 124 bits (311), Expect = 5.430e-34
Identity = 62/117 (52.99%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   91 KSVFGHNGAARLRDIQDGASNTMCMMETPLEKQSALRGPFWSAYVATGAVAAGYRKINAPYSATDDRVNWYTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF 441
            ++ FG NGAAR+RD +DGASNTM M+ETP +K SA  GPFWS Y  T  +   Y  IN PY+  +     +  GS H GGCH LL DG+VRF+SEN+D     ALG++ G EV+GEF
Sbjct:    3 RAAFGSNGAARMRDFRDGASNTMLMIETPQQKTSASYGPFWSHYGHTYFIIVRYG-INQPYAPPNPLPYAWRAGSAHEGGCHALLGDGSVRFLSENMDLTMLTALGTVGGSEVLGEF 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127755.5592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517X4F7_9PLAN7.040e-9389.80Type II secretion system protein G n=6 Tax=Gimesia... [more]
A0A517PGA0_9PLAN2.410e-7173.47Type II secretion system protein G n=3 Tax=Gimesia... [more]
A0A3D3RIH6_9PLAN3.000e-5865.31Prepilin-type cleavage/methylation domain-containi... [more]
A0A2E2C7J5_9PLAN5.410e-5562.50Prepilin-type cleavage/methylation domain-containi... [more]
A0A517V6B0_9PLAN7.650e-5559.72Type II secretion system protein G n=3 Tax=Plancto... [more]
A0A517R8A9_9PLAN3.470e-5362.33Putative major pilin subunit n=1 Tax=Gimesia alba ... [more]
A0A517ZZD5_9PLAN1.120e-4858.33Type II secretion system protein G n=2 Tax=Gimesia... [more]
A0A6I6AD79_9PLAN5.650e-4656.25DUF1559 domain-containing protein n=1 Tax=Gimesia ... [more]
A0A3E0PSX3_9BACT7.680e-3848.30DUF1559 domain-containing protein n=1 Tax=Planctom... [more]
A0A7C2K1Q3_9PLAN5.430e-3452.99DUF1559 domain-containing protein n=1 Tax=Schlesne... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127755contigM-pyrifera_M_contig127755:60..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score184.5
Seed ortholog evalue3.6e-44
Seed eggNOG ortholog344747.PM8797T_08459
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM prepilin-type N-terminal cleavage methylation domain
EggNOG OGs2J2WG@203682,COG2165@1,COG2165@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.7822247-CDS-M-pyrifera_M_contig127755:59..5031622815791.7822247-CDS-M-pyrifera_M_contig127755:59..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127755 60..503 -
1692277571.5933747-CDS-M-pyrifera_M_contig127755:59..5031692277571.5933747-CDS-M-pyrifera_M_contig127755:59..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127755 60..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127755.5592.1prot_M-pyrifera_M_contig127755.5592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127755 60..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127755.5592.1

>prot_M-pyrifera_M_contig127755.5592.1 ID=prot_M-pyrifera_M_contig127755.5592.1|Name=mRNA_M-pyrifera_M_contig127755.5592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
VRNAYRTSYSVLYPWYNMGTSYDNYNDMTRKSVFGHNGAARLRDIQDGAS
NTMCMMETPLEKQSALRGPFWSAYVATGAVAAGYRKINAPYSATDDRVNW
YTPGSEHVGGCHILLTDGAVRFISENIDFDTQKALGSIRGGEVIGEF*
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mRNA from alignment at M-pyrifera_M_contig127755:60..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127755.5592.1 ID=mRNA_M-pyrifera_M_contig127755.5592.1|Name=mRNA_M-pyrifera_M_contig127755.5592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig127755:60..503- (Macrocystis pyrifera P11B4 male)
GTCCGTAACGCTTACCGTACCAGCTACAGTGTGCTTTACCCATGGTATAA TATGGGTACCTCTTACGACAACTATAATGACATGACTCGCAAATCTGTCT TTGGTCATAACGGCGCTGCTCGTCTGCGCGATATTCAGGATGGAGCAAGT AACACGATGTGTATGATGGAGACTCCGTTAGAAAAGCAAAGCGCATTAAG AGGCCCATTCTGGTCTGCCTATGTTGCTACTGGTGCTGTCGCTGCTGGAT ACAGAAAAATCAATGCTCCCTACAGTGCAACCGATGATCGAGTCAACTGG TATACTCCCGGCAGTGAACACGTTGGAGGGTGCCATATTTTGCTGACCGA CGGTGCCGTCAGATTTATCAGTGAAAACATTGATTTCGATACACAGAAAG CCCTCGGATCGATTCGAGGTGGTGAAGTGATTGGAGAATTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127755:60..503-

>mRNA_M-pyrifera_M_contig127755.5592.1 ID=mRNA_M-pyrifera_M_contig127755.5592.1|Name=mRNA_M-pyrifera_M_contig127755.5592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig127755:60..503- (Macrocystis pyrifera P11B4 male)
GTCCGTAACGCTTACCGTACCAGCTACAGTGTGCTTTACCCATGGTATAA
TATGGGTACCTCTTACGACAACTATAATGACATGACTCGCAAATCTGTCT
TTGGTCATAACGGCGCTGCTCGTCTGCGCGATATTCAGGATGGAGCAAGT
AACACGATGTGTATGATGGAGACTCCGTTAGAAAAGCAAAGCGCATTAAG
AGGCCCATTCTGGTCTGCCTATGTTGCTACTGGTGCTGTCGCTGCTGGAT
ACAGAAAAATCAATGCTCCCTACAGTGCAACCGATGATCGAGTCAACTGG
TATACTCCCGGCAGTGAACACGTTGGAGGGTGCCATATTTTGCTGACCGA
CGGTGCCGTCAGATTTATCAGTGAAAACATTGATTTCGATACACAGAAAG
CCCTCGGATCGATTCGAGGTGGTGAAGTGATTGGAGAATTCTAAGTCCGT
AACGCTTACCGTACCAGCTACAGTGTGCTTTACCCATGGTATAATATGGG
TACCTCTTACGACAACTATAATGACATGACTCGCAAATCTGTCTTTGGTC
ATAACGGCGCTGCTCGTCTGCGCGATATTCAGGATGGAGCAAGTAACACG
ATGTGTATGATGGAGACTCCGTTAGAAAAGCAAAGCGCATTAAGAGGCCC
ATTCTGGTCTGCCTATGTTGCTACTGGTGCTGTCGCTGCTGGATACAGAA
AAATCAATGCTCCCTACAGTGCAACCGATGATCGAGTCAACTGGTATACT
CCCGGCAGTGAACACGTTGGAGGGTGCCATATTTTGCTGACCGACGGTGC
CGTCAGATTTATCAGTGAAAACATTGATTTCGATACACAGAAAGCCCTCG
GATCGATTCGAGGTGGTGAAGTGATTGGAGAATTCTAA
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