mRNA_M-pyrifera_M_contig127724.5584.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127724.5584.1
Unique NamemRNA_M-pyrifera_M_contig127724.5584.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: L8H8E1_ACACA (ATPdependent DNA ligase domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8E1_ACACA)

HSP 1 Score: 154 bits (389), Expect = 4.890e-41
Identity = 66/126 (52.38%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    1 SVDPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSD-EWGKVAYHVFDAPQVDEAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
            SVDP GWW+SEKLDGVRAYWNGK  +SR GN+F AP WF + LP +M LDGEL+ GRGKFQ+ V+V +++GSD  W  + + +FDAP +++ FE+R++A    F A+P D+ K++   +CKG+  +
Sbjct:  616 SVDPTGWWLSEKLDGVRAYWNGKAFISRLGNAFYAPDWFCEALPTNMPLDGELFGGRGKFQITVSVAKSQGSDVRWKNLKFQIFDAPGLNKTFEERLQAINDWFSAHPTDYAKVLKMTRCKGQSHL 741          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: R7T7U7_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T7U7_CAPTE)

HSP 1 Score: 151 bits (381), Expect = 8.660e-41
Identity = 67/126 (53.17%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    4 VDPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQVD-EAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDIK 378
            ++P GWW+SEKLDGVRAYW+GK   SR GN F AP WFL GLP DMHLDGEL+ GRGKFQ  V++ +T   D W ++ Y VFDAP +  + FE R +A K +F+ N   +V +V +  CKG + +K
Sbjct:  285 LNPKGWWLSEKLDGVRAYWDGKTFYSRLGNEFIAPPWFLKGLPADMHLDGELFGGRGKFQTTVSIVKTPEDDRWAQLTYQVFDAPSISPQPFEKRCEAIKEYFEKNRAKYVVVVEEEVCKGSEHLK 410          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: UPI0001CBB244 (uncharacterized protein LOC100366927 isoform X1 n=2 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBB244)

HSP 1 Score: 151 bits (381), Expect = 9.220e-41
Identity = 69/126 (54.76%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 SVDPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDE-WGKVAYHVFDAPQVDEAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
            SVDP GWWMSEKLDGVRA+W+G++  SR GN+F AP WF    P DM LDGEL+ GRG FQ  V++ ++  +DE W KV +HVFDAP V + FE R++A + +F AN    VK+V Q KCK K+ +
Sbjct:  280 SVDPKGWWMSEKLDGVRAWWDGRKFRSRLGNTFYAPGWFTKDYPTDMELDGELFGGRGMFQATVSIVKSSDTDERWKKVVFHVFDAPNVKDTFEKRMEALEDYFSANTVTTVKVVDQTKCKNKEHL 405          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: UPI001E1DFDD1 (uncharacterized protein LOC123548346 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DFDD1)

HSP 1 Score: 150 bits (378), Expect = 2.120e-40
Identity = 68/125 (54.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:    4 VDPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQVD-EAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
             +PV WWMSEKLDGVRAYWNG+   SR GN+F AP WF   LP+DMHLDGEL+ GR KFQ  V++ +T     W K+ YHVFDAP ++ E FE R+KA   +F     D+ K+V   KC G D I
Sbjct:  272 TNPVNWWMSEKLDGVRAYWNGRCFYSRLGNAFFAPSWFTKDLPKDMHLDGELFGGRKKFQSTVSIVKTPEHQHWNKIVYHVFDAPHLEKEPFEKRMKAINDYFDTKKTDYAKVVKHEKCTGHDQI 396          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: A0A139AMI7_GONPJ (DNA ligase/mRNA capping enzyme n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AMI7_GONPJ)

HSP 1 Score: 147 bits (372), Expect = 6.120e-40
Identity = 70/128 (54.69%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 SVDPVGWWMSEKLDGVRAYWNGKR--LLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQV-DEAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
            +VDP GWW+SEKLDGVRAYW+ KR    SR GN F  P WF + LP +M LDGEL+ GRGKF   V+V +T  S  W KV + VFDAP + DE FE R+K  + HF  +P DHVK+V Q KC G+  +
Sbjct:  204 NVDPTGWWISEKLDGVRAYWDPKRRQFYSRLGNPFTPPDWFTETLPGNMSLDGELFVGRGKFIETVSVVKTMNSKHWAKVTFQVFDAPSIGDEPFESRLKVIEDHFAKSPIDHVKVVKQTKCTGQAHV 331          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: V3ZA01_LOTGI (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZA01_LOTGI)

HSP 1 Score: 147 bits (371), Expect = 1.630e-39
Identity = 66/124 (53.23%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    7 DPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQVDEA-FEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
            DP GWWMSEKLDGVRA+WNG    SR GN F AP+WF   LP+D+HLDGEL+ GRGKFQ  V + + +  D+W KV YHVFDAP +++  FE+R  + +  F A    +  +  Q KCKGK+ I
Sbjct:  252 DPTGWWMSEKLDGVRAFWNGNCFYSRLGNCFIAPQWFTKDLPKDLHLDGELFGGRGKFQSTVKIVKNQECDDWKKVKYHVFDAPNLEKKPFEERYSSLREFFDAESPQYAVLCEQTKCKGKEHI 375          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: A0A7S3Z8R8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8R8_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 5.720e-39
Identity = 60/121 (49.59%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   16 GWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEG-SDEWGKVAYHVFDAPQVDEAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
            GWWMSEKLDGVRAYW+G RL+SRNGN+F AP WFL+GLP+D+HLDGE++ GR KFQ  +++ R+   S+ W  + Y +FD P +D  FEDR++  ++  +    +++++V    C GKD +
Sbjct:   53 GWWMSEKLDGVRAYWDGTRLMSRNGNTFHAPDWFLEGLPKDLHLDGEMFGGRQKFQETISIVRSGSKSERWKSLTYELFDVPSLDRPFEDRLERIRKLVEMKKNEYLRVVEHKLCTGKDHL 173          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: A0A2C9L857_BIOGL (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L857_BIOGL)

HSP 1 Score: 142 bits (357), Expect = 6.440e-39
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    7 DPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQVD-EAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
            +PVGWW+SEKLDGVRA+WNG+   SR GN+F AP WF   LP+DMHLDGEL+ GRG+FQ  V++ +T  S +W  + YHVFD+P +  E FE R+   K +F+    +H   V Q KCK K+ +
Sbjct:   63 NPVGWWISEKLDGVRAFWNGRCFYSRLGNAFYAPAWFTKDLPKDMHLDGELFGGRGEFQSTVSIVKTAESPKWKDIKYHVFDSPHMGKEVFEKRMHLIKEYFEDVQPEHAVFVEQTKCKSKEHL 186          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: A0A210QMF7_MIZYE (DNA ligase n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QMF7_MIZYE)

HSP 1 Score: 145 bits (366), Expect = 6.630e-39
Identity = 70/131 (53.44%), Postives = 88/131 (67.18%), Query Frame = 1
Query:    1 SVDPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQVD-EAFEDRVKATKRHFKANPCDHVKIVSQAKCKGK----DDIK 378
            S +PVGWW+SEKLDGVRA+WNGK   SR GN F APKWF   LP+DMHLDGEL+ GR KFQ  V++ +T   D W K+ Y VFDAP ++ E FE R +A + +F  N   + ++V Q KC  K    DD+K
Sbjct:  231 SPNPVGWWVSEKLDGVRAFWNGKCFYSRLGNPFYAPKWFTKDLPKDMHLDGELFGGRKKFQSTVSIVKTPECDNWKKIKYSVFDAPYMEKETFEKRQEALREYFDENTPQYAELVKQTKCTSKQQLEDDLK 361          
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Match: UPI000359A797 (uncharacterized protein LOC101848532 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359A797)

HSP 1 Score: 142 bits (359), Expect = 1.560e-37
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:    4 VDPVGWWMSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRGKFQLAVTVTRTEGSDEWGKVAYHVFDAPQVD-EAFEDRVKATKRHFKANPCDHVKIVSQAKCKGKDDI 375
             +PVGWW+SEKLDGVRA+WNG+   SR GN+F AP+WF   LP DM LDGEL+ GRG+FQ  V++ +T  S +W  + YHVFD+P +  E FE+R+ A K +F+    ++   V Q KCK KD +
Sbjct:  300 TNPVGWWISEKLDGVRAFWNGRCFYSRLGNAFYAPEWFTKDLPTDMTLDGELFGGRGQFQSTVSIVKTAESPKWKDIKYHVFDSPDMGKETFENRMNAIKEYFEEKQPEYAVFVEQVKCKSKDQL 424          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127724.5584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H8E1_ACACA4.890e-4152.38ATPdependent DNA ligase domain containing protein ... [more]
R7T7U7_CAPTE8.660e-4153.17Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI0001CBB2449.220e-4154.76uncharacterized protein LOC100366927 isoform X1 n=... [more]
UPI001E1DFDD12.120e-4054.40uncharacterized protein LOC123548346 n=1 Tax=Merce... [more]
A0A139AMI7_GONPJ6.120e-4054.69DNA ligase/mRNA capping enzyme n=1 Tax=Gonapodya p... [more]
V3ZA01_LOTGI1.630e-3953.23DNA_LIGASE_A3 domain-containing protein n=1 Tax=Lo... [more]
A0A7S3Z8R8_9EUKA5.720e-3949.59Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A2C9L857_BIOGL6.440e-3951.61DNA_LIGASE_A3 domain-containing protein n=1 Tax=Bi... [more]
A0A210QMF7_MIZYE6.630e-3953.44DNA ligase n=2 Tax=Pectinidae TaxID=6566 RepID=A0A... [more]
UPI000359A7971.560e-3751.20uncharacterized protein LOC101848532 n=1 Tax=Aplys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127724contigM-pyrifera_M_contig127724:78..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score131.3
Seed ortholog evalue2.9e-28
Seed eggNOG ortholog10224.XP_002737951.1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA ligase OB-like domain
EggNOG OGs2QTYC@2759,38GKG@33154,3BVND@33208,3DBYG@33213,COG1793@1
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size378
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127724.5584.1prot_M-pyrifera_M_contig127724.5584.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127724 102..501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.3601005-UTR-M-pyrifera_M_contig127724:77..1011622815791.3601005-UTR-M-pyrifera_M_contig127724:77..101Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127724 78..101 +
1692277571.3717613-UTR-M-pyrifera_M_contig127724:77..1011692277571.3717613-UTR-M-pyrifera_M_contig127724:77..101Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127724 78..101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.3717227-CDS-M-pyrifera_M_contig127724:101..3971622815791.3717227-CDS-M-pyrifera_M_contig127724:101..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127724 102..397 +
1692277571.3821216-CDS-M-pyrifera_M_contig127724:101..3971692277571.3821216-CDS-M-pyrifera_M_contig127724:101..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127724 102..397 +
1622815791.3816652-CDS-M-pyrifera_M_contig127724:443..5011622815791.3816652-CDS-M-pyrifera_M_contig127724:443..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127724 444..501 +
1692277571.3913631-CDS-M-pyrifera_M_contig127724:443..5011692277571.3913631-CDS-M-pyrifera_M_contig127724:443..501Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127724 444..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127724.5584.1

>prot_M-pyrifera_M_contig127724.5584.1 ID=prot_M-pyrifera_M_contig127724.5584.1|Name=mRNA_M-pyrifera_M_contig127724.5584.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MSEKLDGVRAYWNGKRLLSRNGNSFAAPKWFLDGLPEDMHLDGELWCGRG
KFQLAVTVTRTEGSDEWGKVAYHVFDAPQVDEAFEDRVKATKRHFKANPC
DHVKIVSQAKCKGKDDIK
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mRNA from alignment at M-pyrifera_M_contig127724:78..501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127724.5584.1 ID=mRNA_M-pyrifera_M_contig127724.5584.1|Name=mRNA_M-pyrifera_M_contig127724.5584.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=424bp|location=Sequence derived from alignment at M-pyrifera_M_contig127724:78..501+ (Macrocystis pyrifera P11B4 male)
AGCGTTGACCCGGTCGGCTGGTGGATGTCAGAGAAACTCGATGGTGTGCG AGCGTATTGGAACGGAAAGCGTCTTCTCTCCCGCAACGGCAACTCCTTCG CAGCGCCAAAGTGGTTCTTGGATGGTCTCCCAGAAGACATGCATCTAGAT GGCGAGCTGTGGTGTGGCCGCGGCAAGTTCCAGCTCGCAGTCACTGTGAC CAGAACTGAGGGTTCAGACGAGTGGGGAAAGGTGGCATACCATGTCTTCG ATGCACCTCAGGTTGACGAGGCATTCGAAGATCGTGTGAAGGCTACCAAG CGTCACTTCAAGGCAAACCCGTATGTTTTCCCATCCGCCTGCCACCCCCT TGCTGACTGTCTCCAGATGCGATCACGTCAAGATCGTGAGCCAGGCCAAG TGCAAGGGTAAGGATGACATCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127724:78..501+

>mRNA_M-pyrifera_M_contig127724.5584.1 ID=mRNA_M-pyrifera_M_contig127724.5584.1|Name=mRNA_M-pyrifera_M_contig127724.5584.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig127724:78..501+ (Macrocystis pyrifera P11B4 male)
ATGTCAGAGAAACTCGATGGTGTGCGAGCGTATTGGAACGGAAAGCGTCT
TCTCTCCCGCAACGGCAACTCCTTCGCAGCGCCAAAGTGGTTCTTGGATG
GTCTCCCAGAAGACATGCATCTAGATGGCGAGCTGTGGTGTGGCCGCGGC
AAGTTCCAGCTCGCAGTCACTGTGACCAGAACTGAGGGTTCAGACGAGTG
GGGAAAGGTGGCATACCATGTCTTCGATGCACCTCAGGTTGACGAGGCAT
TCGAAGATCGTGTGAAGGCTACCAAGCGTCACTTCAAGGCAAACCCATGT
CAGAGAAACTCGATGGTGTGCGAGCGTATTGGAACGGAAAGCGTCTTCTC
TCCCGCAACGGCAACTCCTTCGCAGCGCCAAAGTGGTTCTTGGATGGTCT
CCCAGAAGACATGCATCTAGATGGCGAGCTGTGGTGTGGCCGCGGCAAGT
TCCAGCTCGCAGTCACTGTGACCAGAACTGAGGGTTCAGACGAGTGGGGA
AAGGTGGCATACCATGTCTTCGATGCACCTCAGGTTGACGAGGCATTCGA
AGATCGTGTGAAGGCTACCAAGCGTCACTTCAAGGCAAACCCATGCGATC
ACGTCAAGATCGTGAGCCAGGCCAAGTGCAAGGGTAAGGATGACATCAAG
ATGCGATCACGTCAAGATCGTGAGCCAGGCCAAGTGCAAGGGTAAGGATG
ACATCAAG
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