mRNA_M-pyrifera_M_contig127708.5579.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127708.5579.1
Unique NamemRNA_M-pyrifera_M_contig127708.5579.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A3R6Z3J0_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Z3J0_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.690e-26
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = 1
Query:   13 VELTAVDLAPKMVEAAQRRMA----AFPSTKLQVANAEALPFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            V+ T  DL+P M++ A++ +     +FP   ++ AN++ L F+D SFDR  S L LQL PDADAMLREC RVL PGG A F +WGRPE++   +++  A  + G         ++Y LG DL  +QA+  AAGF++  AW
Sbjct:   75 VKYTLTDLSPSMLDFAKKNIPPSRYSFPLDFVE-ANSQELQFQDASFDRYISTLVLQLVPDADAMLRECHRVLLPGGLAGFVIWGRPENTPFFQLMAAANEKLGAPSG---FTSNYALGSDLSVLQAKIHAAGFAAATAW 210          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: K3WC83_GLOUD (Methyltransf_25 domain-containing protein n=2 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC83_GLOUD)

HSP 1 Score: 99.4 bits (246), Expect = 4.120e-23
Identity = 64/135 (47.41%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   16 ELTAVDLAPKMVEAAQRRMAAFPSTKLQV----ANAEALP-FEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFS 405
            +L   DL+P+MV+ AQ R+A   S +L V    AN + L      S DR  S+LCLQLTPDADAMLRE  RVL P G A FT+WGRPE S +  I      E G+    P    ++ LG DL A++ R  AAGFS
Sbjct:   88 QLIVTDLSPEMVKIAQERLANAGSERLDVKVMEANGQDLEEISTASMDRFVSSLCLQLTPDADAMLREAKRVLKPNGLAGFTIWGRPECSGLFIIDSAFNKEIGMSDGAP--HPNFELGRDLVALRKRFAAAGFS 220          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A3P3Y0F2_PLABS (Methyltransf_11 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y0F2_PLABS)

HSP 1 Score: 99.8 bits (247), Expect = 6.220e-23
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1
Query:   16 ELTAVDLAPKMVEAAQRRMAAFPSTK-LQVANAEAL-PFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAWR 423
            +LTA D  P MVE A++ + A P+ + + VANA  L PF D  F+R  +N+ L + PDADAMLRE  RVL+  G AAF++WGRPEHS +M    +   +AGL  N       ++LG D+ A++ R  AAGF     WR
Sbjct:   70 QLTATDYTPTMVEIARKFLGAQPALREVAVANAIDLSPFSDGQFNRYIANMTLHIVPDADAMLREARRVLSDDGIAAFSIWGRPEHSAIMTANQKP--DAGLSTN-------FNLGADVAALKQRILAAGFQRVTMWR 198          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: D2V167_NAEGR (UbiE domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V167_NAEGR)

HSP 1 Score: 98.6 bits (244), Expect = 3.300e-22
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   19 LTAVDLAPKMVEAAQRRMAAFPSTKLQV------ANAEALPFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEA----GLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            LT++DL+ +M++  + +                 A+AE LPFED +FD ++SN CL L P+ D +L E +RVL   G+A F+VWGRP +S    +VP+ + E     G+V NKPP R+ +HL  +   ++ R  + GF +C +W
Sbjct:   82 LTSLDLSKEMIKLTEEKCQVLTQAPFNRKIDYVDASAEELPFEDETFDAVFSNYCLHLVPNPDKVLSEVSRVLKKSGRACFSVWGRPANSPQFTVVPKVIMECKKEWGMVDNKPPVRSPFHLH-NRDQLRERVLSRGFKTCLSW 224          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A0G4IL81_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IL81_PLABS)

HSP 1 Score: 99.8 bits (247), Expect = 8.710e-22
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = 1
Query:   16 ELTAVDLAPKMVEAAQRRMAAFPSTK-LQVANAEAL-PFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAWR 423
            +LTA D  P MVE A++ + A P+ + + VANA  L PF D  F+R  +N+ L + PDADAMLRE  RVL+  G AAF++WGRPEHS +M    +   +AGL  N       ++LG D+ A++ R  AAGF     WR
Sbjct:   70 QLTATDYTPTMVEIARKFLGAQPALREVAVANAIDLSPFSDGQFNRYIANMTLHIVPDADAMLREARRVLSDDGIAAFSIWGRPEHSAIMTANQKP--DAGLSTN-------FNLGADVAALKQRILAAGFQRVTMWR 198          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A2D5QM27_9DELT (HIT domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2D5QM27_9DELT)

HSP 1 Score: 95.5 bits (236), Expect = 1.910e-20
Identity = 55/143 (38.46%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    7 QPVELTAVDLAPKMVEAAQRRM--AAFPSTKLQVANAEA--LPFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGL-VPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            Q  +LT  D++ +M++  + R   A   ST L +  A+A  LPF+D SFDR++S L L L P+AD +++EC RVL+ GG   + VWGRPEHS MM +  + + + G+ +P   P R++++LGG    ++ R +  GF+  + W
Sbjct:  206 QEAKLTLSDISGEMIKITKSRFSEAELKSTHLNIVQADAQKLPFQDTSFDRIFSCLNLMLVPNADLVIKECARVLSSGGLGIWIVWGRPEHSHMMTLSTKVLRQIGIEMPT--PARSNFYLGG-RDTLKQRLEQHGFTQVRRW 345          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A662X517_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X517_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.300e-19
Identity = 59/141 (41.84%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   19 LTAVDLAPKMVEAAQRRMAAFPSTK------LQVANAEAL-PFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            L   DL+P MV  AQ  +A+  +        +++AN + L      S DR+ SNLCLQLTPD DA+LRE  RVL P G   FT+WG+PEHS    +  +   E GL         ++ LG DL A++AR  AAGFS  + W
Sbjct:  639 LLVTDLSPVMVAMAQETLASVAAASEAVDVHVKIANGQDLVEVATGSVDRVVSNLCLQLTPDPDALLREAKRVLAPDGLVGFTIWGQPEHSAKFMLSYDVNRELGLEVGT--DSRNFELGRDLPALRARFAAAGFSRVRIW 777          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A5D6Y8X1_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8X1_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.310e-19
Identity = 65/147 (44.22%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 GEQPVELTAVDLAPKMVEAAQRRMAAFPSTKLQV----ANAEALP-FEDVSFDRLYSNLCLQLTPDADAMLRECTRVL-TPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKP-PTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            G++  +LT  DL+  MV  A+  + +  +++L V    AN + L  F   S DR  +N+CLQLTPD DAMLRE  RVL T GG A FT+WGRPE S    I   A  E GL      P      LG DL A++AR  AAGFS    W
Sbjct:  130 GDEKQQLTVTDLSLAMVSLAKETLRSTSTSRLDVRVQEANGQDLSGFGTGSIDRYVANMCLQLTPDPDAMLREARRVLATDGGVAGFTIWGRPETSGTFAIEDAANKELGLGDGSANPXXXXXALGSDLVALRARFAAAGFSRVCIW 276          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A662Y8S7_9STRA (Methyltransf_25 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y8S7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.800e-19
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 1
Query:   19 LTAVDLAPKMVEAAQRRMAAFPST------KLQVANAEAL-PFEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            L   DL+P MV  A+  +A+  +       ++++AN + L      S +R+ SNLCLQLTPD DA+LRE  RVL P G   FT+WG+PEHS    +  +   E GL         ++ LG DL A++AR  AAGFS  + W
Sbjct:   88 LLVTDLSPVMVAMARETLASVAAASETVDVQVKIANGQDLVEVATGSVNRVVSNLCLQLTPDPDALLREAKRVLAPDGLVGFTIWGQPEHSAKFTLSYDVNRELGLEVGA--DSRNFELGRDLPALRARFAAAGFSHVRIW 226          
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Match: A0A833W3G1_PHYIN (Methyltransferase domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W3G1_PHYIN)

HSP 1 Score: 89.7 bits (221), Expect = 3.120e-19
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query:   19 LTAVDLAPKMVEAAQRRMAAFPSTKLQV----ANAEALP-FEDVSFDRLYSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAMFEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAW 420
            LT  DL+P MV  A++ ++   +  +++    AN + L      S DR  + LCLQLTPD DAMLRE +RVLT  G A FT+WG P+ S M  I+P    E G   N     + + LG DL +++ R   AGF + Q W
Sbjct:   74 LTVTDLSPVMVGLAEKNLSGAGTENVEIKCKKANGQNLTEVATGSVDRYVAGLCLQLTPDPDAMLREASRVLTADGIAGFTIWGSPDRSGMFTIIPAVNKELGFEENAG-KHSFFTLGKDLLSLRKRFALAGFKNVQIW 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127708.5579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3R6Z3J0_9STRA4.690e-2643.57Methyltransf_11 domain-containing protein n=1 Tax=... [more]
K3WC83_GLOUD4.120e-2347.41Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A3P3Y0F2_PLABS6.220e-2344.93Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D2V167_NAEGR3.300e-2236.81UbiE domain-containing protein n=1 Tax=Naegleria g... [more]
A0A0G4IL81_PLABS8.710e-2244.93Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A2D5QM27_9DELT1.910e-2038.46HIT domain-containing protein n=1 Tax=Myxococcales... [more]
A0A662X517_9STRA1.300e-1941.84Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A5D6Y8X1_9STRA1.310e-1944.22Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A662Y8S7_9STRA1.800e-1940.43Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A833W3G1_PHYIN3.120e-1940.29Methyltransferase domain n=1 Tax=Phytophthora infe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127708contigM-pyrifera_M_contig127708:9..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue8.5e-19
Seed eggNOG ortholog65071.PYU1_T002574
Hectar predicted targeting categoryother localisation
EggNOG free text desc.UbiE COQ5 methyltransferase. Source PGD
EggNOG OGs1MHEX@121069,2S919@2759,COG2226@1
COG Functional cat.H
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815791.0666935-CDS-M-pyrifera_M_contig127708:8..4311622815791.0666935-CDS-M-pyrifera_M_contig127708:8..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127708 9..431 +
1692277571.2084084-CDS-M-pyrifera_M_contig127708:8..4311692277571.2084084-CDS-M-pyrifera_M_contig127708:8..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127708 9..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127708.5579.1prot_M-pyrifera_M_contig127708.5579.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127708 9..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127708.5579.1

>prot_M-pyrifera_M_contig127708.5579.1 ID=prot_M-pyrifera_M_contig127708.5579.1|Name=mRNA_M-pyrifera_M_contig127708.5579.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
GEQPVELTAVDLAPKMVEAAQRRMAAFPSTKLQVANAEALPFEDVSFDRL
YSNLCLQLTPDADAMLRECTRVLTPGGQAAFTVWGRPEHSRMMEIVPEAM
FEAGLVPNKPPTRASYHLGGDLHAVQARAKAAGFSSCQAWR
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mRNA from alignment at M-pyrifera_M_contig127708:9..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127708.5579.1 ID=mRNA_M-pyrifera_M_contig127708.5579.1|Name=mRNA_M-pyrifera_M_contig127708.5579.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig127708:9..431+ (Macrocystis pyrifera P11B4 male)
GGCGAGCAGCCAGTGGAGCTCACAGCCGTTGACCTGGCACCCAAGATGGT GGAGGCTGCGCAGCGGCGCATGGCCGCCTTCCCGAGTACCAAGCTGCAGG TGGCGAACGCAGAGGCCCTGCCCTTCGAGGATGTCTCCTTTGATCGCCTC TACTCCAACCTTTGCCTTCAACTGACGCCCGACGCTGATGCAATGTTGCG CGAATGCACCCGTGTGCTCACGCCCGGCGGCCAGGCGGCGTTCACCGTGT GGGGGAGGCCAGAGCACTCCCGCATGATGGAAATCGTGCCTGAGGCCATG TTTGAGGCAGGCCTTGTCCCCAATAAGCCTCCAACACGCGCGTCGTACCA CCTCGGCGGCGACCTGCATGCGGTCCAGGCGCGCGCCAAGGCGGCCGGCT TCTCCTCCTGCCAAGCCTGGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127708:9..431+

>mRNA_M-pyrifera_M_contig127708.5579.1 ID=mRNA_M-pyrifera_M_contig127708.5579.1|Name=mRNA_M-pyrifera_M_contig127708.5579.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig127708:9..431+ (Macrocystis pyrifera P11B4 male)
GGCGAGCAGCCAGTGGAGCTCACAGCCGTTGACCTGGCACCCAAGATGGT
GGAGGCTGCGCAGCGGCGCATGGCCGCCTTCCCGAGTACCAAGCTGCAGG
TGGCGAACGCAGAGGCCCTGCCCTTCGAGGATGTCTCCTTTGATCGCCTC
TACTCCAACCTTTGCCTTCAACTGACGCCCGACGCTGATGCAATGTTGCG
CGAATGCACCCGTGTGCTCACGCCCGGCGGCCAGGCGGCGTTCACCGTGT
GGGGGAGGCCAGAGCACTCCCGCATGATGGAAATCGTGCCTGAGGCCATG
TTTGAGGCAGGCCTTGTCCCCAATAAGCCTCCAACACGCGCGTCGTACCA
CCTCGGCGGCGACCTGCATGCGGTCCAGGCGCGCGCCAAGGCGGCCGGCT
TCTCCTCCTGCCAAGCCTGGCGTGGCGAGCAGCCAGTGGAGCTCACAGCC
GTTGACCTGGCACCCAAGATGGTGGAGGCTGCGCAGCGGCGCATGGCCGC
CTTCCCGAGTACCAAGCTGCAGGTGGCGAACGCAGAGGCCCTGCCCTTCG
AGGATGTCTCCTTTGATCGCCTCTACTCCAACCTTTGCCTTCAACTGACG
CCCGACGCTGATGCAATGTTGCGCGAATGCACCCGTGTGCTCACGCCCGG
CGGCCAGGCGGCGTTCACCGTGTGGGGGAGGCCAGAGCACTCCCGCATGA
TGGAAATCGTGCCTGAGGCCATGTTTGAGGCAGGCCTTGTCCCCAATAAG
CCTCCAACACGCGCGTCGTACCACCTCGGCGGCGACCTGCATGCGGTCCA
GGCGCGCGCCAAGGCGGCCGGCTTCTCCTCCTGCCAAGCCTGGCGT
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