mRNA_M-pyrifera_M_contig12769.5577.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12769.5577.1
Unique NamemRNA_M-pyrifera_M_contig12769.5577.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12769.5577.1 vs. uniprot
Match: D7G566_ECTSI (Zinc finger FYVE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G566_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 7.020e-35
Identity = 80/134 (59.70%), Postives = 94/134 (70.15%), Query Frame = 1 
Query:    1 RFTAGHAKRYVDRVHAQHRRGEAPPGEVDHAKVDWSGVGARFCSLSWYDRQLVENSRATDRSESSPKEGAGGEGGETLTTSQSTEAIDD--GKASSVSGDSGSFSPGARPYGSDVGFGVRARPGGEASVMATLK 396
            RFTAGHAKRYVD++H+QHRRGEAPPG+VD+AKVDWSGVGARFCSLSWYDRQLVENSR+ D  E   K     E GE     + +++ D     ++ + GDSG    G        GFGVRARP  +ASVMATLK
Sbjct:   94 RFTAGHAKRYVDKMHSQHRRGEAPPGQVDNAKVDWSGVGARFCSLSWYDRQLVENSRSGDTLEGPLKRDEEQEKGEKQGVVEGSDSGDPILSPSARLHGDSGGGDGG-------FGFGVRARPA-DASVMATLK 219
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BLAST of mRNA_M-pyrifera_M_contig12769.5577.1 vs. uniprot
Match: A0A6H5KD51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD51_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.430e-16
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 RFTAGHAKRYVDRVHAQHRRGEAPPGEVDHAKVDWSGVGAR 123
            RFTAGHAKRYVD++ +QHRRGEAPPG+VD+AKVDWSGVGAR
Sbjct:  166 RFTAGHAKRYVDKMRSQHRRGEAPPGQVDNAKVDWSGVGAR 206
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12769.5577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G566_ECTSI7.020e-3559.70Zinc finger FYVE domain-containing protein n=1 Tax... [more]
A0A6H5KD51_9PHAE3.430e-1685.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12769contigM-pyrifera_M_contig12769:5144..6852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue5.5e-31
Seed eggNOG ortholog2880.D7G566
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
Hectar predicted targeting categoryother localisation
GOsGO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016567,GO:0019222,GO:0019538,GO:0032446,GO:0036211,GO:0042176,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045732,GO:0048518,GO:0050789,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:1901564
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1818@1,KOG1818@2759,KOG2088@1,KOG2088@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.9929118-CDS-M-pyrifera_M_contig12769:5143..54321622815790.9929118-CDS-M-pyrifera_M_contig12769:5143..5432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12769 5144..5432 -
1692277571.1592-CDS-M-pyrifera_M_contig12769:5143..54321692277571.1592-CDS-M-pyrifera_M_contig12769:5143..5432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12769 5144..5432 -
1622815791.006411-CDS-M-pyrifera_M_contig12769:6730..68521622815791.006411-CDS-M-pyrifera_M_contig12769:6730..6852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12769 6731..6852 -
1692277571.176551-CDS-M-pyrifera_M_contig12769:6730..68521692277571.176551-CDS-M-pyrifera_M_contig12769:6730..6852Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12769 6731..6852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12769.5577.1prot_M-pyrifera_M_contig12769.5577.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12769 5144..6852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12769.5577.1

>prot_M-pyrifera_M_contig12769.5577.1 ID=prot_M-pyrifera_M_contig12769.5577.1|Name=mRNA_M-pyrifera_M_contig12769.5577.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
RFTAGHAKRYVDRVHAQHRRGEAPPGEVDHAKVDWSGVGARFCSLSWYDR
QLVENSRATDRSESSPKEGAGGEGGETLTTSQSTEAIDDGKASSVSGDSG
SFSPGARPYGSDVGFGVRARPGGEASVMATLKARGG*
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mRNA from alignment at M-pyrifera_M_contig12769:5144..6852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12769.5577.1 ID=mRNA_M-pyrifera_M_contig12769.5577.1|Name=mRNA_M-pyrifera_M_contig12769.5577.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1709bp|location=Sequence derived from alignment at M-pyrifera_M_contig12769:5144..6852- (Macrocystis pyrifera P11B4 male)
AGGTTCACGGCTGGCCACGCGAAGCGTTACGTGGACAGGGTGCACGCGCA
GCACCGCAGGGGTGAAGCCCCGCCGGGGGAGGTCGACCACGCCAAGGTGG
ACTGGTCGGGAGTAGGGGCGAGGTGAGGTTTACCATGACGACTTCTACGA
TAGAGGTAGCACATTTCCGCTGCAAAGTTTTCTGAATGACGGGGTTCCTT
ATCCCAAAACCGTTGGGATGCCAACCTTGTTTCGAAAAATGTCCTTTTTG
TATACTTGGGCCATGGGATTATTCATCGGGATGCAGTTTGATTTTCGCTG
AAGTCAGTTCTCGGGTGAGGTATGGAGCTCCTTAAGGTCAAGCGAGGAGC
CTCAGAAAATTTAGGGTGGGCCTCTATCGTAGAACGCCTCCCATGCTGTG
TTTGTATGAGGTAATCACCTCCCGGTCTCGACACTGTGCTACAGCAGTAT
GTGTTATGTTGCTGTGTATTTCCACGAATGACGTACATCAGTACGTAGCT
TGGGGACGTGGGTTCAGATGTTGTCGGGTTTGAAACAGGGCGACGGGTGG
TATGCGTTTTTACTGGTGTACCGGTAGTCCGGTAGCACGTAGCATGCCCC
AGTTAGTTTTGCCACTATATCATAGACTACGAATACATTGTGGTGATGGC
ATTTGATGAATTGCTTCTCTGTGCGGTAATTCCTGGTGGCAACAAAGCAG
CAACGACGACAGCAGTCCGCCTACCCCGTGCCCTTTACGCCTGCTCGCTT
TGGCGGGTATATAGTGAATCGCTGCTGTGTTGGCGTACTTTTTAGAAGTA
GGGGGAGTGGTGGTATGTCGATGGTCAACGCTGATTAAGCTGGGGAAACG
GTGGAAGGCAAACAGTTCCACAGATGGCACGAGCTCAACGGAGCTCGAGT
ATATTTTCCTATACCGACTGCTAATGTTCAAGGCTGTTTCCCTGCAGGTT
GCGTCACTTTCAGTGTGGTTTGTAACAACAACGTCATTAGTAGTAAATCA
GTACCTTGGCATCGTACAAATAGAAGGCACGCAGTCAATATAGGAGGCGG
TCAAGCCGTACGTACGGCCGTGCACAACCACTTACGGTAGTGGCAGGGTT
CGTATGGCGCCGCATCGCAGCTAAACACACACACTGTAGATTGTTACCGC
CCTGCCTGAGTGCTACCAGGTACCATGTACTGTAGTATTGATAGTAGCAA
TAGCCGAGGTGCAATAGCCGCGGTGACCGAACGCTGCAGGGGGTTACGTC
AACCGTCCTCCTGCACGCTTTACGACTGCCCTTACCCCCCCCCCCCTCCC
TCCGTCTCGAAAGGGGTGCGTGGTCCATGATAAAATGCCTAAGGCAAGCA
ACTATTGAGTACGCCTCCTTCCCCCCTCCCCCCCCTCCTTCCTACCCCAC
CCTTAACGCGCGCGGGGCAGGTTCTGCTCACTCTCTTGGTACGACCGCCA
ACTCGTGGAGAACTCCCGAGCTACCGACAGAAGCGAGAGCTCGCCAAAGG
AAGGGGCGGGAGGGGAGGGGGGAGAGACGCTCACAACCTCCCAAAGCACG
GAGGCGATTGACGATGGCAAGGCAAGCTCTGTGAGCGGGGACAGCGGCAG
CTTTTCCCCGGGGGCGCGGCCCTACGGCAGCGACGTAGGGTTTGGCGTGA
GGGCTAGACCCGGTGGCGAGGCGTCGGTGATGGCAACGCTCAAGGCAAGG
GGTGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12769:5144..6852-

>mRNA_M-pyrifera_M_contig12769.5577.1 ID=mRNA_M-pyrifera_M_contig12769.5577.1|Name=mRNA_M-pyrifera_M_contig12769.5577.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig12769:5144..6852- (Macrocystis pyrifera P11B4 male)
AGGTTCACGGCTGGCCACGCGAAGCGTTACGTGGACAGGGTGCACGCGCA
GCACCGCAGGGGTGAAGCCCCGCCGGGGGAGGTCGACCACGCCAAGGTGG
ACTGGTCGGGAGTAGGGGCGAGAGGTTCACGGCTGGCCACGCGAAGCGTT
ACGTGGACAGGGTGCACGCGCAGCACCGCAGGGGTGAAGCCCCGCCGGGG
GAGGTCGACCACGCCAAGGTGGACTGGTCGGGAGTAGGGGCGAGGTTCTG
CTCACTCTCTTGGTACGACCGCCAACTCGTGGAGAACTCCCGAGCTACCG
ACAGAAGCGAGAGCTCGCCAAAGGAAGGGGCGGGAGGGGAGGGGGGAGAG
ACGCTCACAACCTCCCAAAGCACGGAGGCGATTGACGATGGCAAGGCAAG
CTCTGTGAGCGGGGACAGCGGCAGCTTTTCCCCGGGGGCGCGGCCCTACG
GCAGCGACGTAGGGTTTGGCGTGAGGGCTAGACCCGGTGGCGAGGCGTCG
GTGATGGCAACGCTCAAGGCAAGGGGTGGATGAGTTCTGCTCACTCTCTT
GGTACGACCGCCAACTCGTGGAGAACTCCCGAGCTACCGACAGAAGCGAG
AGCTCGCCAAAGGAAGGGGCGGGAGGGGAGGGGGGAGAGACGCTCACAAC
CTCCCAAAGCACGGAGGCGATTGACGATGGCAAGGCAAGCTCTGTGAGCG
GGGACAGCGGCAGCTTTTCCCCGGGGGCGCGGCCCTACGGCAGCGACGTA
GGGTTTGGCGTGAGGGCTAGACCCGGTGGCGAGGCGTCGGTGATGGCAAC
GCTCAAGGCAAGGGGTGGATGA
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