mRNA_M-pyrifera_M_contig127689.5575.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127689.5575.1
Unique NamemRNA_M-pyrifera_M_contig127689.5575.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: UPI0019F62BC4 (Aldehyde dehydrogenase family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F62BC4)

HSP 1 Score: 147 bits (370), Expect = 1.170e-42
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNL 261
            GYGLT+GIHSRI+GFAR VF+ TR+GNTY+NRNMVGAVVGVN FGG+GLSGTGPKAGGP YL RFA E+T TDN VA+GGN +L NL
Sbjct:  116 GYGLTLGIHSRIDGFAREVFNATRVGNTYINRNMVGAVVGVNPFGGQGLSGTGPKAGGPHYLPRFATEKTRTDNVVAKGGNTQLFNL 202
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BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A2D9IZ12_9GAMM (Aldedh domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A2D9IZ12_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 1.800e-42
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNL 261
            GYGLT+G+HSRI+GFAR VF+ TR+GNTY+NRNMVGAVVGVN FGG+GLSGTGPKAGGP YL  FA E+T TDN VA+GGN +L NL
Sbjct:   38 GYGLTLGVHSRIDGFAREVFNATRVGNTYINRNMVGAVVGVNPFGGQGLSGTGPKAGGPHYLLSFATEKTRTDNVVAKGGNTQLFNL 124
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BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A095X1C9_9GAMM (Proline dehydrogenase(Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase n=3 Tax=Halieaceae TaxID=1706372 RepID=A0A095X1C9_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 2.490e-39
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFAR VF  TR+GNTY+NRNMVGA+VGVN FGG+GLSGTGPKAGGP  L RFA E+T TDN VA+GGN +L NL E
Sbjct:  324 GYGLTLGVHSRIDGFAREVFQATRVGNTYINRNMVGAIVGVNSFGGQGLSGTGPKAGGPHCLPRFATEKTRTDNVVAKGGNTQLFNLEE 412
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BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A5P9NIQ1_9GAMM (Bifunctional protein PutA n=1 Tax=Halioglobus maricola TaxID=2601894 RepID=A0A5P9NIQ1_9GAMM)

HSP 1 Score: 145 bits (365), Expect = 2.970e-38
Identity = 69/91 (75.82%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGERG 273
            GYGLT+G+HSRI+ FAR VFH TRIGNTY+NRNMVGAV GVN FGG GLSGTGPKAGGP YL RFA ERT T+N VARGGN +L  L E+G
Sbjct:  956 GYGLTLGVHSRIDAFAREVFHATRIGNTYINRNMVGAVPGVNPFGGHGLSGTGPKAGGPNYLVRFATERTRTENVVARGGNTQLFGLTEQG 1046
[Close]
BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A4R2L2Y3_9GAMM (Bifunctional protein PutA n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4R2L2Y3_9GAMM)

HSP 1 Score: 144 bits (364), Expect = 4.050e-38
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFAR VF  TR+GNTY+NRNMVGA+VGVN FGG+GLSGTGPKAGGP YL RF  E+T TDN  A+GGNA+L NL E
Sbjct:  955 GYGLTLGVHSRIDGFARDVFKATRVGNTYINRNMVGAIVGVNPFGGQGLSGTGPKAGGPHYLLRFVTEKTRTDNVTAKGGNAQLFNLAE 1043
[Close]
BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A7Z2NQS3_9GAMM (Bifunctional protein PutA n=2 Tax=Aequoribacter fuscus TaxID=2518989 RepID=A0A7Z2NQS3_9GAMM)

HSP 1 Score: 144 bits (364), Expect = 4.050e-38
Identity = 66/89 (74.16%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFA+ VF  TR+GNTYVNRNMVGAVVGVN FGG+GLSGTGPKAGGP YL RFA+ERT+TDN VA+GGN +L  + +
Sbjct:  960 GYGLTLGVHSRIDGFAQQVFAKTRVGNTYVNRNMVGAVVGVNPFGGQGLSGTGPKAGGPNYLQRFALERTYTDNVVAKGGNTDLFTMAD 1048
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BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A2G6KQC4_9GAMM (Bifunctional protein PutA n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6KQC4_9GAMM)

HSP 1 Score: 144 bits (362), Expect = 7.530e-38
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFA+ VF+ TR+GNTY+NRNMVGAV GVN FGG+GLSGTGPKAGGP YL RFA ERT TDN VA+GGN +L +L E
Sbjct:  953 GYGLTLGVHSRIDGFAQDVFNATRVGNTYINRNMVGAVPGVNPFGGQGLSGTGPKAGGPHYLQRFATERTRTDNVVAKGGNTQLFSLSE 1041
[Close]
BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A4Z0M744_9GAMM (Bifunctional protein PutA n=2 Tax=Haliea sp. SAOS-164 TaxID=2562682 RepID=A0A4Z0M744_9GAMM)

HSP 1 Score: 143 bits (361), Expect = 1.030e-37
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFAR VF  TR+GNTY+NRNMVGAVVGVN FGG+GLSGTGPKAGGP YL RFA E+T TDN  ARGGN +L +L E
Sbjct: 1010 GYGLTLGVHSRIDGFAREVFAATRVGNTYINRNMVGAVVGVNPFGGQGLSGTGPKAGGPHYLARFATEKTRTDNLTARGGNTDLFSLRE 1098
[Close]
BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A3L7E0Y4_9GAMM (Bifunctional protein PutA n=2 Tax=Seongchinamella TaxID=2919372 RepID=A0A3L7E0Y4_9GAMM)

HSP 1 Score: 141 bits (356), Expect = 4.860e-37
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFAR VF  TR+GNTY+NRNMVGAVVGVN FGG+GLSGTGPKAGGP YL RF  E+T TDN VA+GGN +L +L E
Sbjct:  956 GYGLTLGVHSRIDGFARDVFRATRVGNTYINRNMVGAVVGVNPFGGQGLSGTGPKAGGPHYLLRFVNEKTRTDNVVAKGGNTQLFSLQE 1044
[Close]
BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Match: A0A5B0X3C3_9GAMM (Bifunctional protein PutA n=1 Tax=Pseudohalioglobus sp. NY5 TaxID=2606449 RepID=A0A5B0X3C3_9GAMM)

HSP 1 Score: 141 bits (355), Expect = 6.630e-37
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 GYGLTMGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPKAGGPFYLHRFAVERTWTDNTVARGGNAELLNLGE 267
            GYGLT+G+HSRI+GFAR +F  TR+GNTY+NRN VGAVVGVN FGG GLSGTGPKAGGP YL+RFA E+T TDN VA+GGN +L +L E
Sbjct:  959 GYGLTLGVHSRIDGFARDIFAATRVGNTYINRNTVGAVVGVNPFGGMGLSGTGPKAGGPNYLYRFATEKTRTDNVVAKGGNTQLFSLQE 1047
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127689.5575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019F62BC41.170e-4278.16Aldehyde dehydrogenase family protein n=1 Tax=Prot... [more]
A0A2D9IZ12_9GAMM1.800e-4275.86Aldedh domain-containing protein n=1 Tax=Halieacea... [more]
A0A095X1C9_9GAMM2.490e-3974.16Proline dehydrogenase(Proline oxidase) / Delta-1-p... [more]
A0A5P9NIQ1_9GAMM2.970e-3875.82Bifunctional protein PutA n=1 Tax=Halioglobus mari... [more]
A0A4R2L2Y3_9GAMM4.050e-3874.16Bifunctional protein PutA n=1 Tax=Chromatocurvus h... [more]
A0A7Z2NQS3_9GAMM4.050e-3874.16Bifunctional protein PutA n=2 Tax=Aequoribacter fu... [more]
A0A2G6KQC4_9GAMM7.530e-3874.16Bifunctional protein PutA n=2 Tax=Gammaproteobacte... [more]
A0A4Z0M744_9GAMM1.030e-3775.28Bifunctional protein PutA n=2 Tax=Haliea sp. SAOS-... [more]
A0A3L7E0Y4_9GAMM4.860e-3774.16Bifunctional protein PutA n=2 Tax=Seongchinamella ... [more]
A0A5B0X3C3_9GAMM6.630e-3773.03Bifunctional protein PutA n=1 Tax=Pseudohalioglobu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127689contigM-pyrifera_M_contig127689:3..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score133.7
Seed ortholog evalue4.6e-29
Seed eggNOG ortholog876044.IMCC3088_1487
Preferred nameputA
KEGG rclassRC00080,RC00083,RC00216,RC00242,RC00255
KEGG koko:K00294,ko:K13821
KEGG ReactionR00245,R00707,R00708,R01253,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,ko01110,ko01130,map00250,map00330,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Oxidizes proline to glutamate for use as a carbon and nitrogen source
EggNOG OGs1J4PF@118884,1MV93@1224,1RN48@1236,COG0506@1,COG0506@2,COG4230@1,COG4230@2
EC1.2.1.88,1.5.5.2
COG Functional cat.C
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000
Exons1
Model size294
Cds size279
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.8139315-UTR-M-pyrifera_M_contig127689:2..171622815790.8139315-UTR-M-pyrifera_M_contig127689:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127689 3..17 +
1692277571.0445228-UTR-M-pyrifera_M_contig127689:2..171692277571.0445228-UTR-M-pyrifera_M_contig127689:2..17Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127689 3..17 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.830297-CDS-M-pyrifera_M_contig127689:17..2961622815790.830297-CDS-M-pyrifera_M_contig127689:17..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127689 18..296 +
1692277571.0663474-CDS-M-pyrifera_M_contig127689:17..2961692277571.0663474-CDS-M-pyrifera_M_contig127689:17..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127689 18..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127689.5575.1prot_M-pyrifera_M_contig127689.5575.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127689 18..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127689.5575.1

>prot_M-pyrifera_M_contig127689.5575.1 ID=prot_M-pyrifera_M_contig127689.5575.1|Name=mRNA_M-pyrifera_M_contig127689.5575.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MGIHSRIEGFARHVFHTTRIGNTYVNRNMVGAVVGVNCFGGRGLSGTGPK
AGGPFYLHRFAVERTWTDNTVARGGNAELLNLGERGRTRSGD*
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mRNA from alignment at M-pyrifera_M_contig127689:3..296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127689.5575.1 ID=mRNA_M-pyrifera_M_contig127689.5575.1|Name=mRNA_M-pyrifera_M_contig127689.5575.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig127689:3..296+ (Macrocystis pyrifera P11B4 male)
GGTTACGGGCTGACGATGGGGATACACAGCCGAATCGAAGGGTTCGCACG
ACACGTTTTCCACACCACGCGTATCGGCAACACGTACGTCAATCGCAACA
TGGTGGGTGCTGTCGTCGGGGTGAATTGTTTCGGAGGGCGCGGCCTGTCG
GGTACCGGACCGAAAGCAGGCGGCCCTTTTTACCTGCACCGGTTCGCGGT
TGAAAGAACCTGGACGGACAATACCGTTGCCCGGGGCGGGAACGCGGAGC
TGCTCAACCTGGGTGAACGGGGTCGGACCAGGTCAGGTGATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127689:3..296+

>mRNA_M-pyrifera_M_contig127689.5575.1 ID=mRNA_M-pyrifera_M_contig127689.5575.1|Name=mRNA_M-pyrifera_M_contig127689.5575.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig127689:3..296+ (Macrocystis pyrifera P11B4 male)
ATGGGGATACACAGCCGAATCGAAGGGTTCGCACGACACGTTTTCCACAC
CACGCGTATCGGCAACACGTACGTCAATCGCAACATGGTGGGTGCTGTCG
TCGGGGTGAATTGTTTCGGAGGGCGCGGCCTGTCGGGTACCGGACCGAAA
GCAGGCGGCCCTTTTTACCTGCACCGGTTCGCGGTTGAAAGAACCTGGAC
GGACAATACCGTTGCCCGGGGCGGGAACGCGGAGCTGCTCAACCTGGGTG
AACGGGGTCGGACCAGGTCAGGTGATTGAATGGGGATACACAGCCGAATC
GAAGGGTTCGCACGACACGTTTTCCACACCACGCGTATCGGCAACACGTA
CGTCAATCGCAACATGGTGGGTGCTGTCGTCGGGGTGAATTGTTTCGGAG
GGCGCGGCCTGTCGGGTACCGGACCGAAAGCAGGCGGCCCTTTTTACCTG
CACCGGTTCGCGGTTGAAAGAACCTGGACGGACAATACCGTTGCCCGGGG
CGGGAACGCGGAGCTGCTCAACCTGGGTGAACGGGGTCGGACCAGGTCAG
GTGATTGA
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