mRNA_M-pyrifera_M_contig127688.5574.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127688.5574.1
Unique NamemRNA_M-pyrifera_M_contig127688.5574.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127688.5574.1 vs. uniprot
Match: A0A6C7EBG4_ILUCY (Putative MerR family transcriptional regulator n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7EBG4_ILUCY)

HSP 1 Score: 58.5 bits (140), Expect = 3.200e-9
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 KLAALKDLQADIVRAIDGLEHALACPEPSPLTCPGFRAHLDGVLPVDRSGK 153
            K+  L+  +  + RAIDGL HAL CP P PL CPGF+ H+   LPV R+G+
Sbjct:   85 KILELQATRTRLDRAIDGLTHALECPNPVPLDCPGFQQHVADALPVSRNGE 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127688.5574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6C7EBG4_ILUCY3.200e-950.98Putative MerR family transcriptional regulator n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127688contigM-pyrifera_M_contig127688:323..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue3e-07
Seed eggNOG ortholog1313172.YM304_16640
Preferred namesoxR_2
KEGG koko:K13639
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.MerR, DNA binding
EggNOG OGs2IKRG@201174,COG0789@1,COG0789@2
COG Functional cat.K
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.7787163-CDS-M-pyrifera_M_contig127688:322..4931622815790.7787163-CDS-M-pyrifera_M_contig127688:322..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127688 323..493 -
1692277571.0312636-CDS-M-pyrifera_M_contig127688:322..4931692277571.0312636-CDS-M-pyrifera_M_contig127688:322..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127688 323..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127688.5574.1prot_M-pyrifera_M_contig127688.5574.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127688 323..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127688.5574.1

>prot_M-pyrifera_M_contig127688.5574.1 ID=prot_M-pyrifera_M_contig127688.5574.1|Name=mRNA_M-pyrifera_M_contig127688.5574.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
KLAALKDLQADIVRAIDGLEHALACPEPSPLTCPGFRAHLDGVLPVDRSG
KSRPVG*
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mRNA from alignment at M-pyrifera_M_contig127688:323..493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127688.5574.1 ID=mRNA_M-pyrifera_M_contig127688.5574.1|Name=mRNA_M-pyrifera_M_contig127688.5574.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig127688:323..493- (Macrocystis pyrifera P11B4 male)
AAGCTGGCGGCGTTGAAAGACCTGCAGGCCGACATCGTTCGAGCCATCGA
TGGGCTCGAGCACGCGCTTGCCTGCCCCGAGCCCAGCCCTCTGACGTGCC
CTGGCTTCCGGGCCCATCTGGACGGCGTGCTACCGGTCGACCGGTCAGGC
AAGTCGCGCCCGGTCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127688:323..493-

>mRNA_M-pyrifera_M_contig127688.5574.1 ID=mRNA_M-pyrifera_M_contig127688.5574.1|Name=mRNA_M-pyrifera_M_contig127688.5574.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig127688:323..493- (Macrocystis pyrifera P11B4 male)
AAGCTGGCGGCGTTGAAAGACCTGCAGGCCGACATCGTTCGAGCCATCGA
TGGGCTCGAGCACGCGCTTGCCTGCCCCGAGCCCAGCCCTCTGACGTGCC
CTGGCTTCCGGGCCCATCTGGACGGCGTGCTACCGGTCGACCGGTCAGGC
AAGTCGCGCCCGGTCGGCTGAAAGCTGGCGGCGTTGAAAGACCTGCAGGC
CGACATCGTTCGAGCCATCGATGGGCTCGAGCACGCGCTTGCCTGCCCCG
AGCCCAGCCCTCTGACGTGCCCTGGCTTCCGGGCCCATCTGGACGGCGTG
CTACCGGTCGACCGGTCAGGCAAGTCGCGCCCGGTCGGCTGA
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