mRNA_M-pyrifera_M_contig127686.5573.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127686.5573.1
Unique NamemRNA_M-pyrifera_M_contig127686.5573.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A6L7XJ60_9PROT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6L7XJ60_9PROT)

HSP 1 Score: 221 bits (564), Expect = 1.720e-68
Identity = 91/162 (56.17%), Postives = 121/162 (74.69%), Query Frame = 1
Query:    1 GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVLNRMD 486
            GR  C+ H+W ++  G+L +VPDEENFFDLDK ++GL+P++ D+W GF+F++L P+PA+TL+ +LGGVA QL G PF +M L +TY++EE+ANWK GLDAQNELYH PFQHR+  GDAF   D +  R+ ++ LYNYHSVWSCEY   HK  P    L + D
Sbjct:  108 GRLNCHFHNWVYSDTGELLWVPDEENFFDLDKRDHGLTPVNMDIWEGFVFVHLDPEPAQTLQSYLGGVADQLAGCPFDKMPLSQTYRVEERANWKVGLDAQNELYHFPFQHRHVAGDAFRTNDKRQSRYQDLRLYNYHSVWSCEYGESHKLTPIASTLYKFD 269          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A3D5DFV5_9GAMM (Ring_hydroxyl_A domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DFV5_9GAMM)

HSP 1 Score: 212 bits (539), Expect = 1.110e-66
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1
Query:  139 GFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVLNRMD 486
            GFIFINLAP+P ETLREFLGGVATQLDG PF +M+LLKTYK++E ANWKTGLDAQNELYHLPFQHRYTIG+A ++KDNK+CRF+NVNLYNYHSVWSCEYNP    LPTEEV+ R+D
Sbjct:    2 GFIFINLAPEPNETLREFLGGVATQLDGTPFDKMRLLKTYKVKENANWKTGLDAQNELYHLPFQHRYTIGNALIMKDNKFCRFANVNLYNYHSVWSCEYNPNATSLPTEEVMQRVD 117          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A382HRQ3_9ZZZZ (Rieske domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382HRQ3_9ZZZZ)

HSP 1 Score: 207 bits (526), Expect = 6.210e-64
Identity = 90/162 (55.56%), Postives = 118/162 (72.84%), Query Frame = 1
Query:    1 GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVLNRMD 486
            G   C+ H+W ++ EG+L  VPDEENFFDLDKS+ GL+ ++ DVW GFIF+NL P P ETLRE+LGG+A +LDG PF E  L++TYK++E+ANWK GLDAQNE+YHLPFQH  TIG  FM+ +  +CRF  VN Y+ HSVW+ E+       P E+ ++  D
Sbjct:   12 GAVYCSFHAWLYSDEGELIRVPDEENFFDLDKSKLGLTRVNMDVWEGFIFVNLDPNPKETLREYLGGLADKLDGCPFGEASLVQTYKVDERANWKVGLDAQNEIYHLPFQHSRTIGKIFMMNEKNHCRFQEVNFYDRHSVWASEFVEDPPLTPLEKKMSGFD 173          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A845CPK2_9BACT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A845CPK2_9BACT)

HSP 1 Score: 204 bits (520), Expect = 6.620e-62
Identity = 91/153 (59.48%), Postives = 109/153 (71.24%), Query Frame = 1
Query:    1 GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLP 459
            G   C  HSW ++  G+L  VPDEENFFDLDK   GL P+H DVW GFIFI+LA +P+ETLRE+LGGVA QLDG  FS+MKLL T+ ++  ANWK   D QNE YH PFQHR  +  +FM  +  +CR+ +VNLYNYHSVWSCEY P  K  P
Sbjct:  106 GSLLCPFHSWVYSDAGELRHVPDEENFFDLDKQTLGLKPVHTDVWEGFIFIHLAAEPSETLREYLGGVADQLDGCRFSKMKLLSTHNVDVHANWKVVQDGQNEAYHFPFQHRRVLEGSFMRNEKGHCRYLDVNLYNYHSVWSCEYPPSQKLTP 258          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A2E6EBC1_9GAMM (Rieske domain-containing protein n=1 Tax=Woeseia sp. TaxID=1980636 RepID=A0A2E6EBC1_9GAMM)

HSP 1 Score: 203 bits (516), Expect = 2.630e-61
Identity = 89/162 (54.94%), Postives = 113/162 (69.75%), Query Frame = 1
Query:    1 GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVLNRMD 486
            G   C+ H+W +  EG+L  VPDEENFFDLDKS+ GL+P++ D+W GFIF+NL P P ETLRE+L GV   LDG PF E+ L++TYK++E+ANWK GLDAQNE+YHLPFQH   IG  FM+ +  +CRF  VNL+  HSVW+ E+       P E  L   D
Sbjct:  106 GAVYCSFHAWLYNDEGQLIRVPDEENFFDLDKSKLGLTPVNTDIWEGFIFVNLDPNPKETLREYLKGVTDNLDGCPFGELSLVQTYKVDERANWKVGLDAQNEIYHLPFQHSRLIGKTFMMNEKNHCRFQEVNLWKRHSVWASEFVEDPPLTPLELKLGGFD 267          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A6N8XRB0_9PROT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=3 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N8XRB0_9PROT)

HSP 1 Score: 199 bits (506), Expect = 7.510e-60
Identity = 85/158 (53.80%), Postives = 113/158 (71.52%), Query Frame = 1
Query:    1 GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVL 474
            G   C  H+WA++  G+L  VP+EENFF LD+ ++GL+P+  D+W GFIF++LAP PAETLR +LGGVA +LD  PF EMKL + Y++EE+ANWK  LDAQNE+YHLP+QHR+T+G +F   D   C F  + LY+YHS WSC+Y    K  P +  L
Sbjct:  102 GALFCRLHNWAYSDTGELVGVPNEENFFGLDRRDHGLTPVDTDIWQGFIFVHLAPDPAETLRNYLGGVADRLDSCPFHEMKLSQVYRVEERANWKVVLDAQNEVYHLPYQHRWTLGQSFAKDDTGNCYFKEILLYDYHSFWSCDYQSFQKLTPLKIAL 259          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A6L7P4V1_9BACT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L7P4V1_9BACT)

HSP 1 Score: 199 bits (506), Expect = 8.310e-60
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    1 GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVL 474
            G   C+ H+WA++  G+L  VPDEENFFDLD+ ++GL+PI  DVW GFIFI+L   P +TLRE+LGGVA QLDG PF EMK   TY +E +ANWK   D QNE YH PFQHR  +  +F+  +  + R+ NVNL+NYHSVWSCEY P  K  P   VL
Sbjct:  106 GTVRCHFHNWAYSDRGQLIHVPDEENFFDLDRRQHGLAPIVADVWEGFIFIHLGATPTQTLREYLGGVADQLDGCPFQEMKRRWTYSVEVRANWKLVQDGQNEAYHFPFQHRRILDGSFVTNNKGHNRYQNVNLHNYHSVWSCEYRPSQKLTPLRMVL 263          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A6N9BPK1_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9BPK1_9GAMM)

HSP 1 Score: 197 bits (501), Expect = 4.660e-59
Identity = 87/154 (56.49%), Postives = 104/154 (67.53%), Query Frame = 1
Query:   13 CNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVL 474
            C  HSW +   G+L  VPDEENFFDLDK   GL+P+H DVW GFIFINL  +P ETLR++LGG+A QLDG PF  M+L  T+ +E  ANWK   D QNE YH PFQHR  +  +FM  +  +CR+ +VNLYNYHSVWSCEY    K  P    L
Sbjct:  110 CPFHSWVYGDTGELRHVPDEENFFDLDKRTLGLTPVHTDVWEGFIFINLDAEPRETLRQYLGGLADQLDGLPFDNMRLTSTHNVEVHANWKVVQDGQNEAYHFPFQHRRILDGSFMRNEKGHCRYQDVNLYNYHSVWSCEYPQSQKLTPLRVAL 263          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A6B1HL31_9PROT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HL31_9PROT)

HSP 1 Score: 194 bits (492), Expect = 1.040e-57
Identity = 84/158 (53.16%), Postives = 108/158 (68.35%), Query Frame = 1
Query:   13 CNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVLNRMD 486
            C  H+WA++  G+L  VPDEENF  LDK + GL+P+   +W GFIF++L P PAE LR++LGGVA +LDG PF +MKLL+ YK+EE+ANWK GLDAQNELYH P  H   +G+ F +   + CR+ +V LY  HS+WS EYNP  K  P    L   D
Sbjct:  110 CRFHNWAYSDSGELLHVPDEENFHGLDKRDLGLTPVETSIWEGFIFVHLDPDPAEALRDYLGGVAERLDGCPFGKMKLLQAYKVEERANWKVGLDAQNELYHFPMLHGRALGNLFAMNKKRQCRYLDVALYERHSMWSSEYNPDRKTTPLTTKLFAFD 267          
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Match: A0A6L7X180_9CHLR (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7X180_9CHLR)

HSP 1 Score: 182 bits (462), Expect = 6.890e-53
Identity = 82/154 (53.25%), Postives = 101/154 (65.58%), Query Frame = 1
Query:   13 CNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIFINLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDAQNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHKQLPTEEVL 474
            C  H+W +  EG L  VPDE  F D DK  +GL+P+H D W GFIF++L   PA  LRE+LGGVA +LDG PF EMKL ++Y++EEQANWK  LDAQNELYHLP QHR+T+G AF    +   RF     Y +H+ WS EY    K  P + VL
Sbjct:  147 CPFHNWTYDSEGTLVHVPDEHKFHDFDKRNHGLTPVHTDTWEGFIFVHLGDNPAANLREYLGGVADRLDGCPFHEMKLFQSYRVEEQANWKVMLDAQNELYHLPGQHRWTLGSAFAKNSSTGSRFREFTPYGHHNSWSGEYGLSQKLTPLKIVL 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127686.5573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7XJ60_9PROT1.720e-6856.17Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A3D5DFV5_9GAMM1.110e-6681.03Ring_hydroxyl_A domain-containing protein (Fragmen... [more]
A0A382HRQ3_9ZZZZ6.210e-6455.56Rieske domain-containing protein (Fragment) n=1 Ta... [more]
A0A845CPK2_9BACT6.620e-6259.48Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2E6EBC1_9GAMM2.630e-6154.94Rieske domain-containing protein n=1 Tax=Woeseia s... [more]
A0A6N8XRB0_9PROT7.510e-6053.80Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A6L7P4V1_9BACT8.310e-6056.33Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A6N9BPK1_9GAMM4.660e-5956.49Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A6B1HL31_9PROT1.040e-5753.16Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A6L7X180_9CHLR6.890e-5353.25Aromatic ring-hydroxylating dioxygenase subunit al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127686contigM-pyrifera_M_contig127686:17..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.7
Seed ortholog evalue9.4e-30
Seed eggNOG ortholog1056816.JAFQ01000004_gene6352
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ring hydroxylating alpha subunit (catalytic domain)
EggNOG OGs2GKJY@201174,4FZ79@85025,COG4638@1,COG4638@2
COG Functional cat.P
Best tax levelNocardiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.7482905-CDS-M-pyrifera_M_contig127686:16..5021622815790.7482905-CDS-M-pyrifera_M_contig127686:16..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127686 17..502 -
1692277571.018435-CDS-M-pyrifera_M_contig127686:16..5021692277571.018435-CDS-M-pyrifera_M_contig127686:16..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127686 17..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127686.5573.1prot_M-pyrifera_M_contig127686.5573.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127686 17..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127686.5573.1

>prot_M-pyrifera_M_contig127686.5573.1 ID=prot_M-pyrifera_M_contig127686.5573.1|Name=mRNA_M-pyrifera_M_contig127686.5573.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
GRFGCNCHSWAFTPEGKLAFVPDEENFFDLDKSEYGLSPIHCDVWAGFIF
INLAPQPAETLREFLGGVATQLDGAPFSEMKLLKTYKIEEQANWKTGLDA
QNELYHLPFQHRYTIGDAFMLKDNKYCRFSNVNLYNYHSVWSCEYNPGHK
QLPTEEVLNRMD
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mRNA from alignment at M-pyrifera_M_contig127686:17..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127686.5573.1 ID=mRNA_M-pyrifera_M_contig127686.5573.1|Name=mRNA_M-pyrifera_M_contig127686.5573.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig127686:17..502- (Macrocystis pyrifera P11B4 male)
GGCCGTTTCGGCTGTAATTGCCATAGTTGGGCGTTTACCCCCGAAGGAAA ACTCGCGTTCGTACCGGACGAGGAAAATTTTTTCGACCTCGACAAGAGCG AATACGGACTCAGCCCGATCCACTGCGACGTGTGGGCCGGGTTCATTTTC ATCAACCTCGCGCCGCAACCGGCCGAGACGCTGCGCGAATTTCTCGGCGG GGTCGCGACCCAGCTCGACGGTGCGCCTTTCAGCGAAATGAAACTGCTGA AAACGTACAAAATCGAAGAGCAGGCAAACTGGAAGACCGGTCTCGACGCG CAGAACGAGCTGTACCATTTACCGTTTCAGCACCGCTACACCATCGGCGA CGCGTTCATGCTGAAGGACAACAAGTATTGCCGCTTCTCCAACGTCAACC TGTACAACTACCACAGCGTCTGGTCGTGCGAGTACAACCCCGGGCACAAG CAATTGCCGACCGAGGAAGTGCTTAACCGCATGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127686:17..502-

>mRNA_M-pyrifera_M_contig127686.5573.1 ID=mRNA_M-pyrifera_M_contig127686.5573.1|Name=mRNA_M-pyrifera_M_contig127686.5573.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig127686:17..502- (Macrocystis pyrifera P11B4 male)
GGCCGTTTCGGCTGTAATTGCCATAGTTGGGCGTTTACCCCCGAAGGAAA
ACTCGCGTTCGTACCGGACGAGGAAAATTTTTTCGACCTCGACAAGAGCG
AATACGGACTCAGCCCGATCCACTGCGACGTGTGGGCCGGGTTCATTTTC
ATCAACCTCGCGCCGCAACCGGCCGAGACGCTGCGCGAATTTCTCGGCGG
GGTCGCGACCCAGCTCGACGGTGCGCCTTTCAGCGAAATGAAACTGCTGA
AAACGTACAAAATCGAAGAGCAGGCAAACTGGAAGACCGGTCTCGACGCG
CAGAACGAGCTGTACCATTTACCGTTTCAGCACCGCTACACCATCGGCGA
CGCGTTCATGCTGAAGGACAACAAGTATTGCCGCTTCTCCAACGTCAACC
TGTACAACTACCACAGCGTCTGGTCGTGCGAGTACAACCCCGGGCACAAG
CAATTGCCGACCGAGGAAGTGCTTAACCGCATGGACGGCCGTTTCGGCTG
TAATTGCCATAGTTGGGCGTTTACCCCCGAAGGAAAACTCGCGTTCGTAC
CGGACGAGGAAAATTTTTTCGACCTCGACAAGAGCGAATACGGACTCAGC
CCGATCCACTGCGACGTGTGGGCCGGGTTCATTTTCATCAACCTCGCGCC
GCAACCGGCCGAGACGCTGCGCGAATTTCTCGGCGGGGTCGCGACCCAGC
TCGACGGTGCGCCTTTCAGCGAAATGAAACTGCTGAAAACGTACAAAATC
GAAGAGCAGGCAAACTGGAAGACCGGTCTCGACGCGCAGAACGAGCTGTA
CCATTTACCGTTTCAGCACCGCTACACCATCGGCGACGCGTTCATGCTGA
AGGACAACAAGTATTGCCGCTTCTCCAACGTCAACCTGTACAACTACCAC
AGCGTCTGGTCGTGCGAGTACAACCCCGGGCACAAGCAATTGCCGACCGA
GGAAGTGCTTAACCGCATGGAC
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