mRNA_M-pyrifera_M_contig127676.5569.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127676.5569.1
Unique NamemRNA_M-pyrifera_M_contig127676.5569.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127676.5569.1 vs. uniprot
Match: L8HFK8_ACACA (WD repeatcontaining protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HFK8_ACACA)

HSP 1 Score: 63.2 bits (152), Expect = 3.300e-10
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 CAGKMWIHAGAVLEMLPLTPYSFATAGADGMVVIWKDGRVQSEMRNNYACACLLDKL 171
            C G MW H+ AV +M+ L+  +  + GADG+V++WKDGR Q+E+RN  A   L+  L
Sbjct:  306 CLGDMWGHSDAVYDMVALSDSALCSCGADGLVILWKDGREQTEIRNQMAAISLMQNL 362
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BLAST of mRNA_M-pyrifera_M_contig127676.5569.1 vs. uniprot
Match: A0A0D2WPU1_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WPU1_CAPO3)

HSP 1 Score: 52.0 bits (123), Expect = 2.870e-6
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 CAGKMWIHAGAVLEMLPLTPYSFATAGADGMVVIWKDGRVQSEMRNNYACACLL 162
            C G++  H+ AV  +L    ++FA+ GADGMV++WK+G V+S  RN  A   +L
Sbjct:  375 CIGELVAHSDAVHALLLCNEHTFASCGADGMVILWKNGFVESRKRNELAKMMML 428
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127676.5569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L8HFK8_ACACA3.300e-1045.61WD repeatcontaining protein n=1 Tax=Acanthamoeba c... [more]
A0A0D2WPU1_CAPO32.870e-642.59Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127676contigM-pyrifera_M_contig127676:166..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.5701282-CDS-M-pyrifera_M_contig127676:165..3241622815790.5701282-CDS-M-pyrifera_M_contig127676:165..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127676 166..324 -
1692277570.928429-CDS-M-pyrifera_M_contig127676:165..3241692277570.928429-CDS-M-pyrifera_M_contig127676:165..324Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127676 166..324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.5800087-UTR-M-pyrifera_M_contig127676:324..3361622815790.5800087-UTR-M-pyrifera_M_contig127676:324..336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127676 325..336 -
1692277570.948128-UTR-M-pyrifera_M_contig127676:324..3361692277570.948128-UTR-M-pyrifera_M_contig127676:324..336Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127676 325..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127676.5569.1prot_M-pyrifera_M_contig127676.5569.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127676 166..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127676.5569.1

>prot_M-pyrifera_M_contig127676.5569.1 ID=prot_M-pyrifera_M_contig127676.5569.1|Name=mRNA_M-pyrifera_M_contig127676.5569.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MWIHAGAVLEMLPLTPYSFATAGADGMVVIWKDGRVQSEMRNNYACACLL
DKL
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mRNA from alignment at M-pyrifera_M_contig127676:166..336-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127676.5569.1 ID=mRNA_M-pyrifera_M_contig127676.5569.1|Name=mRNA_M-pyrifera_M_contig127676.5569.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig127676:166..336- (Macrocystis pyrifera P11B4 male)
TGCGCCGGCAAGATGTGGATCCACGCCGGCGCCGTGCTGGAGATGCTGCC
CCTCACGCCCTACTCCTTCGCCACCGCCGGCGCCGACGGCATGGTGGTGA
TCTGGAAGGACGGCAGGGTGCAGTCCGAGATGCGCAACAACTACGCCTGC
GCCTGCCTGCTGGACAAGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127676:166..336-

>mRNA_M-pyrifera_M_contig127676.5569.1 ID=mRNA_M-pyrifera_M_contig127676.5569.1|Name=mRNA_M-pyrifera_M_contig127676.5569.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig127676:166..336- (Macrocystis pyrifera P11B4 male)
ATGTGGATCCACGCCGGCGCCGTGCTGGAGATGCTGCCCCTCACGCCCTA
CTCCTTCGCCACCGCCGGCGCCGACGGCATGGTGGTGATCTGGAAGGACG
GCAGGGTGCAGTCCGAGATGCGCAACAACTACGCCTGCGCCTGCCTGCTG
GACAAGCTCATGTGGATCCACGCCGGCGCCGTGCTGGAGATGCTGCCCCT
CACGCCCTACTCCTTCGCCACCGCCGGCGCCGACGGCATGGTGGTGATCT
GGAAGGACGGCAGGGTGCAGTCCGAGATGCGCAACAACTACGCCTGCGCC
TGCCTGCTGGACAAGCTC
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