mRNA_M-pyrifera_M_contig127595.5566.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127595.5566.1
Unique NamemRNA_M-pyrifera_M_contig127595.5566.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A7S1C3I7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3I7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.680e-43
Identity = 78/146 (53.42%), Postives = 109/146 (74.66%), Query Frame = 1
Query:    7 VDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGV---AVGSSAATG-------QVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            ++YRI+SD R PFRVFP+VEE  TS ++ + VLK+R DIPA SYG NV++RFPVP+ + +VTPE+G    AVG++AA G       + AE+  K ++V W+I+KF+GGTE TLR KI L + +T SIRKE+GP+++ FEIPM++ S
Sbjct:  316 MNYRITSDFRAPFRVFPFVEE--TSPYKVELVLKVRADIPASSYGANVLVRFPVPRTSATVTPEIGPSSQAVGTAAAGGADAGGSAEQAEYRGKDKEVLWLIKKFQGGTEHTLRTKITLSAPSTTSIRKEIGPISLNFEIPMYNVS 459          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A813BRS3_9DINO (AP4M protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BRS3_9DINO)

HSP 1 Score: 146 bits (368), Expect = 4.300e-39
Identity = 76/153 (49.67%), Postives = 103/153 (67.32%), Query Frame = 1
Query:    7 VDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSS-----------------AATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            ++YR++SD R PFRV P VEE   SA + + VLK+R DIP+R+YG NV +RFP P+AATSV P +  A G+                  AA GQVAE+ AK+++V W I+K +GGTE TLR KI+L   + GS RKELGP+T++FE+PM++ S
Sbjct:  300 MNYRMTSDFRAPFRVTPIVEEV--SATKLELVLKVRADIPSRNYGANVTVRFPTPRAATSVKPVLAPATGTKTSSXXXXXXXXXXXXXXAAGGQVAEYLAKEKEVAWQIKKLQGGTEATLRTKISLPHGSGGSARKELGPITLSFEVPMYNVS 450          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A6A7GCG2_9CRUS (AP-4 complex subunit mu-1 n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GCG2_9CRUS)

HSP 1 Score: 140 bits (353), Expect = 4.460e-37
Identity = 65/139 (46.76%), Postives = 99/139 (71.22%), Query Frame = 1
Query:    1 TAVDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTSG 417
            + ++YR++ + R PFR+FP+ E  T   ++ + ++KIR D+P ++YG NV+++FPVPKA TSV+ ++G+        GQ +E+ A  ++V W I+KF GGTE+TLR KI LGS  T  +RKE+GP++MTFEIPM + SG
Sbjct:  281 SVLNYRVTGEFRAPFRIFPFFELVTP--YKIELIIKIRADVPEQNYGGNVLVQFPVPKATTSVSCDLGLGT-----IGQASEYSAVDKKVFWKIKKFGGGTEQTLRVKITLGSQHTTIVRKEIGPISMTFEIPMFNASG 412          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: H3G935_PHYRM (MHD domain-containing protein n=34 Tax=Oomycota TaxID=4762 RepID=H3G935_PHYRM)

HSP 1 Score: 138 bits (347), Expect = 3.380e-36
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 TAVDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            T ++YRI+ D R PFR+FP+VEE + +  + + VLKIR D+P  +YG NV+IRFPVP++  +V+ ++G      ++ GQ+AE+   + QV W I++F GGTE TLR KI LG  +   +R+E+GPV+M FEIPM++TS
Sbjct:  281 TVINYRITGDFRAPFRIFPFVEELSPT--KVEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDIG-----KSSAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITLGQPSP-HVRREIGPVSMNFEIPMYNTS 410          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A2D4BYY1_PYTIN (MHD domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYY1_PYTIN)

HSP 1 Score: 140 bits (353), Expect = 5.350e-36
Identity = 68/139 (48.92%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    1 TAVDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTSG 417
            T ++YRI+ D R PFR+FP+VEE + +  + + +LK+R ++P  +YG NV+IRFPVP+A  +V+ ++G       A GQ+AE+   + QV W I++F GGTE TLR KI L S  +  +R+E+GPV+M FEIPMHSTSG
Sbjct:  596 TVINYRITXDFRAPFRIFPFVEEQSPT--KIEMLLKVRAEMPENNYGANVIIRFPVPQATVAVSXDIG-----KNAAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITL-SQPSPHVRREIGPVSMNFEIPMHSTSG 726          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A7S0D2M7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D2M7_9EUKA)

HSP 1 Score: 136 bits (343), Expect = 1.670e-35
Identity = 64/136 (47.06%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    7 VDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            ++YRI+SD R PFR+FP+ E   +S ++ + ++KIR DIP  + GTN+V++FPVPK+ +SV+ + G+ V      GQ  E+D+KK+ V W I+K  GGTE TLR KI L  A T S++KE+GP++M FE+P+++ S
Sbjct:  300 MNYRITSDFRIPFRIFPFFE--LSSPYKVELIVKIRADIPETNGGTNIVVQFPVPKSTSSVSSQTGIGV-----QGQNTEYDSKKQMVLWRIKKMLGGTEHTLRSKIVLTKAHTNSVKKEIGPISMQFEVPLYNPS 428          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A5A8EE88_CAFRO (MHD domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EE88_CAFRO)

HSP 1 Score: 134 bits (336), Expect = 1.710e-34
Identity = 70/162 (43.21%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    7 VDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGS-------------------------SAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTSG 417
            ++YR+S D R PFRV P++EE   S ++ +F LKIR DIP ++YGT+V+++F VP+AAT+V P V  A                            +A   Q+AEFD+K R+V W I+KF+GG E TL+  I L S + GS RKE+GP+ + FEIPM++ SG
Sbjct:  272 MNYRMSCDFRAPFRVLPHIEEV--SPYKLEFTLKIRADIPPKNYGTHVIVKFGVPRAATAVVPTVEAAXXXXXXXXGGIRAXXXXXXXXXXXXXXXAAERLQIAEFDSKAREVVWSIKKFQGGREVTLKTSITLSSPSAGSARKEVGPIGVDFEIPMYNVSG 431          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A6G0X4R8_9STRA (MHD domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X4R8_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.720e-34
Identity = 66/138 (47.83%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 TAVDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            T ++YRI+ + R PFR+FP+VEE  TS  + + VLKIR D+P  +YG NV+IRFPVP    +V+ ++G         GQ+AEF   + QV W I++F GG+E TLR KI L   +T  +R+E+GPV+M FEIPM++ S
Sbjct:  276 TVINYRITGEFRAPFRIFPFVEE--TSPTKIEMVLKIRADMPDNNYGANVIIRFPVPHNTIAVSCDIG-----KNTAGQLAEFRENENQVRWAIKRFTGGSEMTLRAKITLSGPST-HVRREIGPVSMNFEIPMYNVS 405          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A7S2UX12_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX12_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.250e-33
Identity = 63/136 (46.32%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    7 VDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            ++YR++S+ RTPFR+FP +EE   S ++ + VL +R DIP  +YG NV +  PVP+ A S T E+G  V      GQ  E+D  +R++ W I+KF GGTE+ LR KI L SA   + R+E+GP++M FEIPM++ S
Sbjct:  302 LNYRVTSEFRTPFRLFPAIEEV--SPYKLELVLMVRADIPESNYGANVTVTIPVPRTAASATGEMGENV-----VGQSCEYDQGERKLVWTIKKFPGGTEQGLRAKITLASATAPAARREIGPISMGFEIPMYNVS 430          
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Match: A0A067CRN5_SAPPC (MHD domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRN5_SAPPC)

HSP 1 Score: 129 bits (324), Expect = 6.790e-33
Identity = 63/138 (45.65%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 TAVDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNVVIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGGTEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTS 414
            T ++YRI+ D R PFR+FP+VEE + +  + + +LK+R D+P  +YG NV+IRFPVP+   SV+ ++G         GQ+AEF   + QV W I++F G +E TLR KI L S  +  +R+E+GPV+M FEIPM++ S
Sbjct:  276 TVINYRITGDFRAPFRIFPFVEEQSPT--KIEMILKVRADMPDNNYGANVIIRFPVPQNTVSVSCDIG-----KNTAGQLAEFRENENQVRWAIKRFAGASELTLRAKITL-SGPSQHVRREIGPVSMNFEIPMYNVS 405          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127595.5566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C3I7_9STRA3.680e-4353.42Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A813BRS3_9DINO4.300e-3949.67AP4M protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A6A7GCG2_9CRUS4.460e-3746.76AP-4 complex subunit mu-1 n=1 Tax=Hirondellea giga... [more]
H3G935_PHYRM3.380e-3647.83MHD domain-containing protein n=34 Tax=Oomycota Ta... [more]
A0A2D4BYY1_PYTIN5.350e-3648.92MHD domain-containing protein n=1 Tax=Pythium insi... [more]
A0A7S0D2M7_9EUKA1.670e-3547.06Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A5A8EE88_CAFRO1.710e-3443.21MHD domain-containing protein n=1 Tax=Cafeteria ro... [more]
A0A6G0X4R8_9STRA4.720e-3447.83MHD domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A7S2UX12_9STRA1.250e-3346.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067CRN5_SAPPC6.790e-3345.65MHD domain-containing protein n=4 Tax=Saprolegniac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127595contigM-pyrifera_M_contig127595:1..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue6.2e-30
Seed eggNOG ortholog227086.JGI_V11_37976
KEGG koko:K12402
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006622,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019904,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090160,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1903361,GO:1990778
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0937@1,KOG0937@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.4394531-CDS-M-pyrifera_M_contig127595:0..2031622815790.4394531-CDS-M-pyrifera_M_contig127595:0..203Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127595 1..203 -
1692277570.8591375-CDS-M-pyrifera_M_contig127595:0..2031692277570.8591375-CDS-M-pyrifera_M_contig127595:0..203Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127595 1..203 -
1622815790.4498968-CDS-M-pyrifera_M_contig127595:266..4801622815790.4498968-CDS-M-pyrifera_M_contig127595:266..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127595 267..480 -
1692277570.8708286-CDS-M-pyrifera_M_contig127595:266..4801692277570.8708286-CDS-M-pyrifera_M_contig127595:266..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127595 267..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127595.5566.1prot_M-pyrifera_M_contig127595.5566.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127595 1..480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127595.5566.1

>prot_M-pyrifera_M_contig127595.5566.1 ID=prot_M-pyrifera_M_contig127595.5566.1|Name=mRNA_M-pyrifera_M_contig127595.5566.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
TAVDYRISSDIRTPFRVFPYVEEATTSAFRADFVLKIRCDIPARSYGTNV
VIRFPVPKAATSVTPEVGVAVGSSAATGQVAEFDAKKRQVTWVIRKFKGG
TEETLRCKINLGSAATGSIRKELGPVTMTFEIPMHSTSG
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mRNA from alignment at M-pyrifera_M_contig127595:1..480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127595.5566.1 ID=mRNA_M-pyrifera_M_contig127595.5566.1|Name=mRNA_M-pyrifera_M_contig127595.5566.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig127595:1..480- (Macrocystis pyrifera P11B4 male)
ACAGCTGTCGACTACAGGATCTCATCCGACATTCGGACTCCATTCCGTGT CTTCCCTTACGTGGAAGAAGCAACAACAAGTGCTTTCCGAGCAGACTTTG TCCTCAAGATTCGTTGTGACATTCCAGCTCGATCGTATGGCACCAATGTT GTGATTCGATTTCCAGTACCAAAAGCAGCTACTTCAGTGACCCCAGAAGT TGGAGTAGCTGTTGGTTCTTCAGCTGCAGCTGCTGGAGGAGGAGGAGGTG GTGGGGGAGGAGGAAGTGGGGGGAAAGGTTCTTCTGCTGCAACTGGACAA GTCGCTGAATTTGATGCGAAAAAGAGGCAAGTCACGTGGGTCATTCGAAA GTTCAAAGGAGGGACTGAAGAAACGCTTCGATGCAAGATCAATCTAGGAT CTGCCGCAACAGGATCCATCCGAAAAGAACTTGGTCCAGTCACAATGACC TTTGAAATCCCAATGCACTCCACCTCTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127595:1..480-

>mRNA_M-pyrifera_M_contig127595.5566.1 ID=mRNA_M-pyrifera_M_contig127595.5566.1|Name=mRNA_M-pyrifera_M_contig127595.5566.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig127595:1..480- (Macrocystis pyrifera P11B4 male)
ACAGCTGTCGACTACAGGATCTCATCCGACATTCGGACTCCATTCCGTGT
CTTCCCTTACGTGGAAGAAGCAACAACAAGTGCTTTCCGAGCAGACTTTG
TCCTCAAGATTCGTTGTGACATTCCAGCTCGATCGTATGGCACCAATGTT
GTGATTCGATTTCCAGTACCAAAAGCAGCTACTTCAGTGACCCCAGAAGT
TGGAGTAGCTGTTGACAGCTGTCGACTACAGGATCTCATCCGACATTCGG
ACTCCATTCCGTGTCTTCCCTTACGTGGAAGAAGCAACAACAAGTGCTTT
CCGAGCAGACTTTGTCCTCAAGATTCGTTGTGACATTCCAGCTCGATCGT
ATGGCACCAATGTTGTGATTCGATTTCCAGTACCAAAAGCAGCTACTTCA
GTGACCCCAGAAGTTGGAGTAGCTGTTGGTTCTTCTGCTGCAACTGGACA
AGTCGCTGAATTTGATGCGAAAAAGAGGCAAGTCACGTGGGTCATTCGAA
AGTTCAAAGGAGGGACTGAAGAAACGCTTCGATGCAAGATCAATCTAGGA
TCTGCCGCAACAGGATCCATCCGAAAAGAACTTGGTCCAGTCACAATGAC
CTTTGAAATCCCAATGCACTCCACCTCTGGTGTTCTTCTGCTGCAACTGG
ACAAGTCGCTGAATTTGATGCGAAAAAGAGGCAAGTCACGTGGGTCATTC
GAAAGTTCAAAGGAGGGACTGAAGAAACGCTTCGATGCAAGATCAATCTA
GGATCTGCCGCAACAGGATCCATCCGAAAAGAACTTGGTCCAGTCACAAT
GACCTTTGAAATCCCAATGCACTCCACCTCTGGT
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