mRNA_M-pyrifera_M_contig127564.5558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127564.5558.1
Unique NamemRNA_M-pyrifera_M_contig127564.5558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A497EC77_9BACT (NAD-dependent deacetylase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A497EC77_9BACT)

HSP 1 Score: 102 bits (253), Expect = 4.240e-25
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVL 231
            LLI AGAG+G DS LPD+R   GFW  Y PL++ G+S  E++    F QDP LAWGFY HR NLY    PHRGF +L
Sbjct:   22 LLICAGAGMGVDSGLPDFRGDEGFWNAYPPLRQLGISFVEMANPGWFEQDPALAWGFYGHRLNLYRDTSPHRGFEIL 98          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A831TDW9_9BACT (NAD-dependent protein deacetylase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A831TDW9_9BACT)

HSP 1 Score: 101 bits (252), Expect = 2.330e-24
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKG 261
            LLI AGAG+G DS +PD+R P GFWR Y P ++ G+  +EL+    F  DP LAWGFY HR NLY    PHRGF++L +  E A  G
Sbjct:   20 LLITAGAGMGVDSGMPDFRGPEGFWRAYPPYQQLGLRFEELANPFWFANDPALAWGFYGHRLNLYRATMPHRGFQILKKWGERARLG 106          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A0G4FRB1_VITBC (Deacetylase sirtuin-type domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRB1_VITBC)

HSP 1 Score: 102 bits (253), Expect = 2.580e-24
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKGR 264
            +LI+AGAG+G DS LPD+R P GFWR Y P +  G+ L+++S    F QDP LAWGF+ HR  LY  A PH GFR+L  +    ++ R
Sbjct:   17 VLIMAGAGMGVDSGLPDFRGPEGFWRAYPPFRSLGLHLEDMSNPQWFYQDPPLAWGFFGHRYGLYTKATPHDGFRILLDIGRAKERAR 104          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A1S3HZ77_LINUN (uncharacterized protein LOC106159559 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HZ77_LINUN)

HSP 1 Score: 100 bits (249), Expect = 8.020e-24
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKG 261
            ++I AGAG+G DS LPD+R P GFW+ Y PLK+  ++L ++S  S F +DPT AWGF+ HR  LY    PH GF +L +     DKG
Sbjct:   21 IVITAGAGMGVDSGLPDFRGPQGFWKAYPPLKKMNLTLSQMSTPSWFLEDPTFAWGFFGHRYKLYKNTTPHEGFHILRKWTRQMDKG 107          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A2T3XP13_9BURK (NAD-dependent deacetylase n=1 Tax=Trinickia symbiotica TaxID=863227 RepID=A0A2T3XP13_9BURK)

HSP 1 Score: 100 bits (248), Expect = 8.450e-24
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKG 261
            LLI AGAGIG DS LPD+R P GFWR Y  L+  G++  E++  + F +DP LAWGFY HR NLY    PH GF++L +  E   +G
Sbjct:   19 LLITAGAGIGIDSGLPDFRGPEGFWRAYPALRAEGLTFTEIANPAAFLRDPRLAWGFYGHRLNLYRATVPHEGFQILKRWGEACAQG 105          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: UPI0009A48656 (NAD-dependent deacetylase n=1 Tax=Zoogloea sp. LCSB751 TaxID=1965277 RepID=UPI0009A48656)

HSP 1 Score: 99.8 bits (247), Expect = 1.210e-23
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCE 246
            L+  AGAG+G DS LPD+R  SGFWR Y  L EA ++ +E++  + FR+DP LAWGFY HR NLY    PHRGF +L  + E
Sbjct:   17 LVAAAGAGMGVDSGLPDFRGNSGFWRAYPALAEARITFEEIANPAAFRRDPRLAWGFYGHRLNLYRHTQPHRGFAILRAIAE 98          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A2E7ZTI0_9DELT (NAD-dependent deacetylase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E7ZTI0_9DELT)

HSP 1 Score: 99.4 bits (246), Expect = 1.580e-23
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQL 240
            +L+ AGAG+G DS LPD+R   GFWR Y P+K  G+S  E++    F QDP+LAWGFY HR  LY    PHRGF +L Q+
Sbjct:   19 ILVHAGAGMGVDSGLPDFRGDEGFWRAYPPMKRLGLSFYEMANPRWFEQDPSLAWGFYGHRLQLYRDTKPHRGFELLRQM 98          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A4R3XR51_9PROT (NAD-dependent SIR2 family protein deacetylase n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3XR51_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 3.800e-23
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKG 261
            L+I AGAG+G DS LPD+R   GFW+ Y  L +AG+   E++  S FR +P LAWGFY HR NLY    PH GF +L +L E   KG
Sbjct:   20 LIITAGAGMGVDSGLPDFRGAEGFWQAYPALGKAGIQFHEIANPSAFRSNPQLAWGFYGHRLNLYRDTVPHEGFSILLRLGESMPKG 106          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A356KPG0_9BACT (NAD-dependent protein deacetylase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KPG0_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 3.870e-23
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKG 261
            L+I AGAG+G DS LPD+R   GFW  Y P +  GVS  E++  + FRQDP  AWGFY HR+NLY    PH GF++L +  E   +G
Sbjct:   24 LVIGAGAGMGVDSGLPDFRGDEGFWNAYPPYRRLGVSFIEMANPAHFRQDPAFAWGFYGHRRNLYRATVPHEGFQILRRWSERCREG 110          
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Match: A0A518BCU7_9BACT (NAD-dependent protein deacetylase n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518BCU7_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 4.800e-23
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQDPTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKG 261
            L++ AGAG+G DS LPD+R  +GFW+ Y PL++ G+   E++  S F +DPTLAWGFY HR  LY   +PH GF +L + C     G
Sbjct:   19 LVVAAGAGMGVDSGLPDFRGDTGFWKAYPPLQKLGIRFVEMANPSWFDRDPTLAWGFYGHRLELYRQTEPHAGFGLLLEWCRQRPAG 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127564.5558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A497EC77_9BACT4.240e-2557.14NAD-dependent deacetylase (Fragment) n=1 Tax=Acido... [more]
A0A831TDW9_9BACT2.330e-2452.87NAD-dependent protein deacetylase n=1 Tax=Gemmatac... [more]
A0A0G4FRB1_VITBC2.580e-2450.00Deacetylase sirtuin-type domain-containing protein... [more]
A0A1S3HZ77_LINUN8.020e-2449.43uncharacterized protein LOC106159559 n=1 Tax=Lingu... [more]
A0A2T3XP13_9BURK8.450e-2451.72NAD-dependent deacetylase n=1 Tax=Trinickia symbio... [more]
UPI0009A486561.210e-2353.66NAD-dependent deacetylase n=1 Tax=Zoogloea sp. LCS... [more]
A0A2E7ZTI0_9DELT1.580e-2353.75NAD-dependent deacetylase n=1 Tax=Myxococcales bac... [more]
A0A4R3XR51_9PROT3.800e-2351.72NAD-dependent SIR2 family protein deacetylase n=1 ... [more]
A0A356KPG0_9BACT3.870e-2350.57NAD-dependent protein deacetylase n=1 Tax=Planctom... [more]
A0A518BCU7_9BACT4.800e-2348.28NAD-dependent protein deacetylase n=1 Tax=Planctom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127564contigM-pyrifera_M_contig127564:34..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score97.1
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog749222.Nitsa_0890
Preferred namesrtN
KEGG koko:K12410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent protein deacetylase, SIR2 family
EggNOG OGs1MUK1@1224,2YN54@29547,42MFD@68525,COG0846@1,COG0846@2
COG Functional cat.K
Best tax levelEpsilonproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.127335-CDS-M-pyrifera_M_contig127564:33..2971622815790.127335-CDS-M-pyrifera_M_contig127564:33..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127564 34..297 -
1692277570.7398994-CDS-M-pyrifera_M_contig127564:33..2971692277570.7398994-CDS-M-pyrifera_M_contig127564:33..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127564 34..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127564.5558.1prot_M-pyrifera_M_contig127564.5558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127564 34..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127564.5558.1

>prot_M-pyrifera_M_contig127564.5558.1 ID=prot_M-pyrifera_M_contig127564.5558.1|Name=mRNA_M-pyrifera_M_contig127564.5558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
LLIIAGAGIGCDSQLPDYRSPSGFWRDYAPLKEAGVSLKELSKTSLFRQD
PTLAWGFYTHRQNLYGCADPHRGFRVLWQLCELADKGR
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mRNA from alignment at M-pyrifera_M_contig127564:34..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127564.5558.1 ID=mRNA_M-pyrifera_M_contig127564.5558.1|Name=mRNA_M-pyrifera_M_contig127564.5558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig127564:34..297- (Macrocystis pyrifera P11B4 male)
CTCTTGATCATTGCTGGCGCAGGCATTGGATGCGATTCACAGCTTCCTGA CTACAGGAGCCCCTCCGGCTTCTGGCGAGACTACGCACCTCTGAAGGAAG CAGGAGTCTCCCTGAAGGAGTTATCAAAAACCTCACTCTTTCGACAAGAC CCAACGCTGGCATGGGGCTTCTACACGCACCGTCAGAACCTCTATGGCTG TGCTGACCCCCACCGCGGGTTTCGGGTGCTGTGGCAGCTCTGCGAACTGG CAGACAAGGGAAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127564:34..297-

>mRNA_M-pyrifera_M_contig127564.5558.1 ID=mRNA_M-pyrifera_M_contig127564.5558.1|Name=mRNA_M-pyrifera_M_contig127564.5558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig127564:34..297- (Macrocystis pyrifera P11B4 male)
CTCTTGATCATTGCTGGCGCAGGCATTGGATGCGATTCACAGCTTCCTGA
CTACAGGAGCCCCTCCGGCTTCTGGCGAGACTACGCACCTCTGAAGGAAG
CAGGAGTCTCCCTGAAGGAGTTATCAAAAACCTCACTCTTTCGACAAGAC
CCAACGCTGGCATGGGGCTTCTACACGCACCGTCAGAACCTCTATGGCTG
TGCTGACCCCCACCGCGGGTTTCGGGTGCTGTGGCAGCTCTGCGAACTGG
CAGACAAGGGAAGACTCTTGATCATTGCTGGCGCAGGCATTGGATGCGAT
TCACAGCTTCCTGACTACAGGAGCCCCTCCGGCTTCTGGCGAGACTACGC
ACCTCTGAAGGAAGCAGGAGTCTCCCTGAAGGAGTTATCAAAAACCTCAC
TCTTTCGACAAGACCCAACGCTGGCATGGGGCTTCTACACGCACCGTCAG
AACCTCTATGGCTGTGCTGACCCCCACCGCGGGTTTCGGGTGCTGTGGCA
GCTCTGCGAACTGGCAGACAAGGGAAGA
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