mRNA_M-pyrifera_M_contig127559.5556.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127559.5556.1
Unique NamemRNA_M-pyrifera_M_contig127559.5556.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127559.5556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127559contigM-pyrifera_M_contig127559:2..478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size477
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.039007-UTR-M-pyrifera_M_contig127559:1..311622815790.039007-UTR-M-pyrifera_M_contig127559:1..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127559 2..31 +
1692277570.7087328-UTR-M-pyrifera_M_contig127559:1..311692277570.7087328-UTR-M-pyrifera_M_contig127559:1..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127559 2..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.054917-CDS-M-pyrifera_M_contig127559:31..4781622815790.054917-CDS-M-pyrifera_M_contig127559:31..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127559 32..478 +
1692277570.7177508-CDS-M-pyrifera_M_contig127559:31..4781692277570.7177508-CDS-M-pyrifera_M_contig127559:31..478Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127559 32..478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127559.5556.1prot_M-pyrifera_M_contig127559.5556.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127559 32..478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127559.5556.1

>prot_M-pyrifera_M_contig127559.5556.1 ID=prot_M-pyrifera_M_contig127559.5556.1|Name=mRNA_M-pyrifera_M_contig127559.5556.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MVFGFMGGLMTLFYVSDKYMPLDLTFAQGFWPFVIGGLAAYALLGVAVWH
VTRKELPIETTDSELTEEPRIPMRFVDGFKSIFSLAEGCIAGLALLAGIF
GLGGLTGLTLAFCANAWLDESQPTYRPLRIDQMMMTTHNGILRTYSIEY
back to top

mRNA from alignment at M-pyrifera_M_contig127559:2..478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127559.5556.1 ID=mRNA_M-pyrifera_M_contig127559.5556.1|Name=mRNA_M-pyrifera_M_contig127559.5556.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig127559:2..478+ (Macrocystis pyrifera P11B4 male)
GGCTTGTTCGAGGTGCTGGCCATCCTGAGTATGGTGTTCGGGTTCATGGG
CGGATTGATGACGCTGTTCTATGTGTCCGACAAGTACATGCCGCTCGATC
TGACGTTTGCTCAAGGCTTCTGGCCATTCGTGATCGGCGGTCTTGCGGCA
TACGCACTGCTTGGCGTCGCAGTCTGGCACGTGACTCGCAAGGAACTGCC
AATTGAGACAACCGACAGTGAACTGACAGAGGAGCCACGAATTCCGATGA
GATTTGTCGATGGATTCAAGTCGATTTTCTCGCTGGCCGAAGGTTGCATT
GCGGGACTCGCACTGTTGGCCGGTATCTTCGGTCTCGGTGGATTGACGGG
TCTCACCCTTGCCTTCTGTGCCAACGCGTGGCTTGATGAGTCACAGCCGA
CTTATCGACCGCTGCGGATTGACCAAATGATGATGACCACGCACAACGGG
ATCCTCCGCACGTACTCGATCGAGTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127559:2..478+

>mRNA_M-pyrifera_M_contig127559.5556.1 ID=mRNA_M-pyrifera_M_contig127559.5556.1|Name=mRNA_M-pyrifera_M_contig127559.5556.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig127559:2..478+ (Macrocystis pyrifera P11B4 male)
ATGGTGTTCGGGTTCATGGGCGGATTGATGACGCTGTTCTATGTGTCCGA
CAAGTACATGCCGCTCGATCTGACGTTTGCTCAAGGCTTCTGGCCATTCG
TGATCGGCGGTCTTGCGGCATACGCACTGCTTGGCGTCGCAGTCTGGCAC
GTGACTCGCAAGGAACTGCCAATTGAGACAACCGACAGTGAACTGACAGA
GGAGCCACGAATTCCGATGAGATTTGTCGATGGATTCAAGTCGATTTTCT
CGCTGGCCGAAGGTTGCATTGCGGGACTCGCACTGTTGGCCGGTATCTTC
GGTCTCGGTGGATTGACGGGTCTCACCCTTGCCTTCTGTGCCAACGCGTG
GCTTGATGAGTCACAGCCGACTTATCGACCGCTGCGGATTGACCAAATGA
TGATGACCACGCACAACGGGATCCTCCGCACGTACTCGATCGAGTACATG
GTGTTCGGGTTCATGGGCGGATTGATGACGCTGTTCTATGTGTCCGACAA
GTACATGCCGCTCGATCTGACGTTTGCTCAAGGCTTCTGGCCATTCGTGA
TCGGCGGTCTTGCGGCATACGCACTGCTTGGCGTCGCAGTCTGGCACGTG
ACTCGCAAGGAACTGCCAATTGAGACAACCGACAGTGAACTGACAGAGGA
GCCACGAATTCCGATGAGATTTGTCGATGGATTCAAGTCGATTTTCTCGC
TGGCCGAAGGTTGCATTGCGGGACTCGCACTGTTGGCCGGTATCTTCGGT
CTCGGTGGATTGACGGGTCTCACCCTTGCCTTCTGTGCCAACGCGTGGCT
TGATGAGTCACAGCCGACTTATCGACCGCTGCGGATTGACCAAATGATGA
TGACCACGCACAACGGGATCCTCCGCACGTACTCGATCGAGTAC
back to top