mRNA_M-pyrifera_M_contig127557.5555.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127557.5555.1
Unique NamemRNA_M-pyrifera_M_contig127557.5555.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A2V3JDL9_9FLOR (RAN GTPase-activating protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JDL9_9FLOR)

HSP 1 Score: 86.7 bits (213), Expect = 5.290e-17
Identity = 54/153 (35.29%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDALREGG-VSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVE-HLAHLRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEAFAKTV 453
            A+  +LT    LK +   N G++ +A  +I  AL E    SL +  F+NN+    G+IA+A +V HSP L+  R S++R+G EG   +C A++     LR ++  DN    SFG+  A A+A   S A  ++TL+++D  LED+GV+    ++
Sbjct:  109 AIGELLTNQEKLKELLLCNNGLAADAGDLITSALLETKPTSLVKLHFHNNLLETPGSIALAPIVEHSPDLEDFRFSSLRIGREGAVRICKALQPRFQTLRYLNLADN----SFGQEGAEALADAVSDAPLLETLIVSDCLLEDDGVKVICDSL 257          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A7S3BZM2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BZM2_9VIRI)

HSP 1 Score: 83.6 bits (205), Expect = 7.450e-16
Identity = 55/137 (40.15%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   34 LKVVKFQNCGISGEAAAVIRDALR-EGGVSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVEHLAH-LRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEA 438
            L+ +KFQN GIS EAAA I + L  E   SLR   F+NNM+GD GA  +A L+     ++  R S+ RVG +GG A+  A+      LRR+D  DN+     GE  + A+A   +    ++   L DL   D GVEA
Sbjct:  215 LRSLKFQNNGISKEAAAAIVEILPDESAASLRRLHFFNNMTGDLGAAHLARLLAKCTSMEDFRCSSTRVGAQGGAAMAQALAGATQGLRRLDLADNVL----GEQGSIALAHCVAVQPKLEAAKLGDLGAGDRGVEA 347          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A7R9XY42_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XY42_9VIRI)

HSP 1 Score: 82.0 bits (201), Expect = 2.650e-15
Identity = 54/137 (39.42%), Postives = 77/137 (56.20%), Query Frame = 1
Query:   34 LKVVKFQNCGISGEAAAVIRDALR-EGGVSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVEHLAH-LRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEA 438
            L+ +KFQN GIS EAAA I + L  E   +LR   F+NNM+GD+GA  ++ L+     ++  R S+ RVG  GG A+  A+    + LRR+D  DN+F    GE  A A+A   +    ++   L DL   D G+EA
Sbjct:  249 LRSLKFQNNGISKEAAAAIAEILPDESAATLRRLHFFNNMTGDEGAGHLSRLLAKCRSMEDFRCSSTRVGAAGGAAMAAAMAGATNSLRRLDLADNVF----GEQGAIALAHCIAVQPKLEYAKLGDLGACDRGIEA 381          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A0W8DJV1_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJV1_PHYNI)

HSP 1 Score: 80.5 bits (197), Expect = 1.020e-14
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDAL-----REGGVSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVE-HLAHLRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEAFAKTV 453
            A + +L   P L+ + F N GIS  AA+VI   +     ++   +L E  FYNNMSG  G +A+A+++    +L +LR ++ R G E  + +  +V  HL  L+ +D +D     SF E+ A  +A+  S   ++Q L L D +L  EGVE  AK +
Sbjct:  871 ACFDLLIPQPTLRRLLFCNNGISAAAASVIAQEIVLQNGKDAQSTLEEFHFYNNMSGHDGCVAVANVLAQCKKLTLLRYASARAGPEASEEMARSVNTHLRQLKSLDLSDC----SFEEDGATQLAEAISKQPNLQYLKLRDASLCAEGVEKVAKAL 1023          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: R7Q5W4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5W4_CHOCR)

HSP 1 Score: 78.2 bits (191), Expect = 4.790e-14
Identity = 52/155 (33.55%), Postives = 87/155 (56.13%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDALREGG-VSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVE-HLAH-LRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEAFAKTVL 456
            AL  +L     L+ +   N G++ +A  +I  A+ E     L++  F+NN+    G++A+A +V +SP L+  R S++R+G +G   +C A+   L   LR ++ +DN    +FGE  A A+A     AA ++TLLL D  L D+GV+A  K ++
Sbjct:  117 ALGSLLAGRAELQELLLCNNGLAADAGDLIASAVLETAPTKLKKLHFHNNLLETAGSVALAPIVDNSPMLEDFRFSSLRLGRDGSVRICKALHPRLGETLRHLNLSDN----TFGEEGAEALADVLGDAAVLETLLLRDDALGDDGVQAVCKALV 267          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: W2J3U5_PHYPR (Uncharacterized protein (Fragment) n=13 Tax=Phytophthora TaxID=4783 RepID=W2J3U5_PHYPR)

HSP 1 Score: 77.4 bits (189), Expect = 1.170e-13
Identity = 52/157 (33.12%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDAL-----REGGVSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVE-HLAHLRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEAFAKTV 453
            A + +L   P L+ + F N GIS  AA+VI   +     ++   +L E  FYNNMSG  G +A+A+++    +L +LR ++ R G E  + +  +V  HL  L+ +D +D     SF E+ A  +A+  S   +++ L L D +L  EG E  AK +
Sbjct:  569 ACFDLLIPQPTLRRLLFCNNGISAAAASVIAQEIVLQNGKDAQSTLEEFHFYNNMSGHDGCVAVANVLAQCKKLTLLRYASARAGPEASEEMARSVNTHLRQLKSLDLSDC----SFEEDGATQLAEAISKQPNLRYLKLRDASLCAEGAEKVAKAL 721          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A7S3UY67_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3UY67_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.550e-13
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDALREGGVSLREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAV-EHLAHLRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEA 438
            AL   L     L+ V F N G+S  +  ++ + L  G  SL+   F+NNMSG+ GA+A+A++++++  L  +R+S+ RV  +GG  L  ++  H   L +++  D+MF    GE+ A A+ +      +++ L+L D  LE+EG+EA
Sbjct:  148 ALESTLGSFTELEEVSFYNNGLSELSLKLLAEYLPTG--SLKRIHFHNNMSGNGGAVALANMLKNAAMLTDVRMSSSRVRPDGGCELIKSIGTHTHFLTKLNLGDSMF----GESGAQALTETLPKLLNLEELVLRDTGLEEEGLEA 288          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A024U891_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U891_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.470e-13
Identity = 47/111 (42.34%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDALREGGVS----LREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVEHLAHLRRIDFTDNMF 321
            A + VL R  +L+ +   N G+S E+A VI D L   G S    L+   FYNNMSGD GA A+A L   +P L+ LR ST R   EG +    A+  L++L+R+D +DN F
Sbjct:  110 ASFGVLERQANLERLYLCNNGLSAESAQVIADVLLFRGASVPTKLKTFHFYNNMSGDGGAKALATLFPSTPLLEDLRFSTTRSQREGCRVFAQALTVLSNLKRVDLSDNTF 220          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A2D4CFZ3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFZ3_PYTIN)

HSP 1 Score: 75.1 bits (183), Expect = 7.490e-13
Identity = 52/129 (40.31%), Postives = 73/129 (56.59%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRD--ALREGG--VS-LREAWFYNNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVE-HLAHLRRIDFTDNMFLPSFGENFANAIAKPS 369
            A + +L   P L+ + F N GIS  AAAVI +   L+ G   VS L E  FYNNMSG  GA+A+A+++    +L++ R ++ R G E  +AL  +V  HL HL  +D  D  F  S  E  A+A+A  S
Sbjct:  584 ACFDLLIPQPVLRRLLFCNNGISAAAAAVIANEIVLQNGADVVSPLEEFHFYNNMSGHDGALAVANVLHRCEKLRVFRYASARAGLEASEALARSVATHLRHLTSLDLRDCSFEDSGAEALADAVANQS 712          
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Match: A0A8J2SF92_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF92_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-13
Identity = 50/144 (34.72%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDALREGGVSLREAWFY-NNMSGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVEHLAHLRRIDFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEG 429
            AL P+   +  L  +K  N G+S  AA  ++D L   GV+  E++ Y NNMSGD+GA AIA++V+ SP L  LR S  R G  G     +A+     L  +D  DN F    G+     ++  +  A+ ++ L + D +L D+G
Sbjct:  131 ALLPLFMGAAPLVHLKTCNNGMSSAAAHQLKDVLTSKGVTSLESFHYFNNMSGDEGAKAIAEIVQKSPDLTDLRFSGTRAGRAGSLVFAEALRARQLLVTVDLADNTFGTDGGQLLGEWLSAANG-ASPLEVLNVRDCSLGDDG 273          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127557.5555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JDL9_9FLOR5.290e-1735.29RAN GTPase-activating protein 1 n=1 Tax=Gracilario... [more]
A0A7S3BZM2_9VIRI7.450e-1640.15Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7R9XY42_9VIRI2.650e-1539.42Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A0W8DJV1_PHYNI1.020e-1434.39Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
R7Q5W4_CHOCR4.790e-1433.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
W2J3U5_PHYPR1.170e-1333.12Uncharacterized protein (Fragment) n=13 Tax=Phytop... [more]
A0A7S3UY67_9STRA2.550e-1333.33Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A024U891_9STRA5.470e-1342.34Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A2D4CFZ3_PYTIN7.490e-1340.31Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8J2SF92_9STRA8.600e-1334.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127557contigM-pyrifera_M_contig127557:47..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog130081.XP_005703416.1
KEGG koko:K02909,ko:K14319
KEGG Pathwayko03010,ko03013,map03010,map03013
KEGG ModuleM00178,M00427
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5238@1,KOG1909@2759
COG Functional cat.AT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.0022693-CDS-M-pyrifera_M_contig127557:46..5051622815790.0022693-CDS-M-pyrifera_M_contig127557:46..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127557 47..505 -
1692277570.692364-CDS-M-pyrifera_M_contig127557:46..5051692277570.692364-CDS-M-pyrifera_M_contig127557:46..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127557 47..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127557.5555.1prot_M-pyrifera_M_contig127557.5555.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127557 47..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127557.5555.1

>prot_M-pyrifera_M_contig127557.5555.1 ID=prot_M-pyrifera_M_contig127557.5555.1|Name=mRNA_M-pyrifera_M_contig127557.5555.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
ALWPVLTRSPHLKVVKFQNCGISGEAAAVIRDALREGGVSLREAWFYNNM
SGDQGAIAIADLVRHSPRLQILRVSTMRVGEEGGKALCDAVEHLAHLRRI
DFTDNMFLPSFGENFANAIAKPSSCAASIQTLLLNDLNLEDEGVEAFAKT
VLQ
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mRNA from alignment at M-pyrifera_M_contig127557:47..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127557.5555.1 ID=mRNA_M-pyrifera_M_contig127557.5555.1|Name=mRNA_M-pyrifera_M_contig127557.5555.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig127557:47..505- (Macrocystis pyrifera P11B4 male)
GCGCTGTGGCCCGTTCTGACCCGCTCCCCGCATTTGAAAGTCGTAAAATT CCAAAATTGCGGCATTTCGGGCGAGGCCGCGGCCGTGATTCGAGACGCCC TGCGTGAGGGGGGCGTGAGCTTGCGAGAGGCGTGGTTCTACAACAACATG AGCGGCGACCAGGGCGCGATTGCCATCGCCGACCTCGTCAGGCATTCTCC CCGCCTCCAAATCCTCCGTGTCTCCACAATGCGGGTCGGAGAGGAAGGTG GCAAGGCGCTGTGCGATGCTGTGGAACACCTCGCACACTTGCGTCGCATC GATTTCACCGACAACATGTTCCTCCCCTCGTTTGGGGAAAACTTTGCAAA CGCAATCGCAAAACCAAGCTCTTGCGCCGCTTCCATCCAAACCCTCCTCC TCAATGACCTCAACCTAGAAGACGAAGGAGTCGAAGCATTTGCAAAAACT GTCCTACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127557:47..505-

>mRNA_M-pyrifera_M_contig127557.5555.1 ID=mRNA_M-pyrifera_M_contig127557.5555.1|Name=mRNA_M-pyrifera_M_contig127557.5555.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig127557:47..505- (Macrocystis pyrifera P11B4 male)
GCGCTGTGGCCCGTTCTGACCCGCTCCCCGCATTTGAAAGTCGTAAAATT
CCAAAATTGCGGCATTTCGGGCGAGGCCGCGGCCGTGATTCGAGACGCCC
TGCGTGAGGGGGGCGTGAGCTTGCGAGAGGCGTGGTTCTACAACAACATG
AGCGGCGACCAGGGCGCGATTGCCATCGCCGACCTCGTCAGGCATTCTCC
CCGCCTCCAAATCCTCCGTGTCTCCACAATGCGGGTCGGAGAGGAAGGTG
GCAAGGCGCTGTGCGATGCTGTGGAACACCTCGCACACTTGCGTCGCATC
GATTTCACCGACAACATGTTCCTCCCCTCGTTTGGGGAAAACTTTGCAAA
CGCAATCGCAAAACCAAGCTCTTGCGCCGCTTCCATCCAAACCCTCCTCC
TCAATGACCTCAACCTAGAAGACGAAGGAGTCGAAGCATTTGCAAAAACT
GTCCTACAAGCGCTGTGGCCCGTTCTGACCCGCTCCCCGCATTTGAAAGT
CGTAAAATTCCAAAATTGCGGCATTTCGGGCGAGGCCGCGGCCGTGATTC
GAGACGCCCTGCGTGAGGGGGGCGTGAGCTTGCGAGAGGCGTGGTTCTAC
AACAACATGAGCGGCGACCAGGGCGCGATTGCCATCGCCGACCTCGTCAG
GCATTCTCCCCGCCTCCAAATCCTCCGTGTCTCCACAATGCGGGTCGGAG
AGGAAGGTGGCAAGGCGCTGTGCGATGCTGTGGAACACCTCGCACACTTG
CGTCGCATCGATTTCACCGACAACATGTTCCTCCCCTCGTTTGGGGAAAA
CTTTGCAAACGCAATCGCAAAACCAAGCTCTTGCGCCGCTTCCATCCAAA
CCCTCCTCCTCAATGACCTCAACCTAGAAGACGAAGGAGTCGAAGCATTT
GCAAAAACTGTCCTACAA
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