mRNA_M-pyrifera_M_contig127543.5552.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127543.5552.1
Unique NamemRNA_M-pyrifera_M_contig127543.5552.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A7S3B7X5_9VIRI (Alpha-galactosidase (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7X5_9VIRI)

HSP 1 Score: 114 bits (284), Expect = 1.800e-28
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 VDGMVEVDRDANG-RLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQ-DHEVAYAQYATMRDALLSTNSNITFS 333
            +D    VDRD +  RL+ D   FP+G   ++ ++HS+G  FGIY  RG  TC GR    G+E +DA T+ DWGVDY KEDSCNA   DHEVA+A Y  MRDAL +T   I FS
Sbjct:   77 IDDCWAVDRDPDTFRLIADPKAFPDGIKAVADYVHSKGLKFGIYTDRGPKTCAGRPASAGYEGVDAQTFADWGVDYLKEDSCNADSADHEVAFADYGRMRDALNATGRPIAFS 189          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A419W598_9BACT (Alpha-galactosidase n=1 Tax=Mangrovibacterium diazotrophicum TaxID=1261403 RepID=A0A419W598_9BACT)

HSP 1 Score: 115 bits (287), Expect = 3.050e-28
Identity = 56/110 (50.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 DGMVEVDRDANGRLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLSTNSNITFS 333
            DG + ++RDA GRL  D   FP+G   L  ++HS+G  FGIY C GS TCGG  G  GHEY+DA +Y DWGVD+ K D CN   ++  A   Y TMRDAL +T   I FS
Sbjct:   72 DGWMAMERDAQGRLYGDPKKFPSGMEALGEYIHSKGLKFGIYNCAGSKTCGGYPGSRGHEYMDAQSYADWGVDFLKYDWCNT--ENLNAKGAYQTMRDALYATGRPIVFS 179          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A7S3F7D7_9VIRI (Alpha-galactosidase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F7D7_9VIRI)

HSP 1 Score: 114 bits (284), Expect = 5.900e-28
Identity = 58/113 (51.33%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 VDGMVEVDRDANG-RLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQ-DHEVAYAQYATMRDALLSTNSNITFS 333
            +D    VDRD +  RL+ D   FP+G   ++ ++HS+G  FGIY  RG  TC GR    G+E +DA T+ DWGVDY KEDSCNA   DHEVA+A Y  MRDAL +T   I FS
Sbjct:   16 IDDCWAVDRDPDTFRLIADPKAFPDGIKAVADYVHSKGLKFGIYTDRGPKTCAGRPASAGYEGVDAQTFADWGVDYLKEDSCNADSADHEVAFADYGRMRDALNATGRPIAFS 128          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A812W8Z9_9DINO (Alpha-galactosidase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812W8Z9_9DINO)

HSP 1 Score: 114 bits (285), Expect = 6.400e-28
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   25 RDANGRLVPDKTGFPNGFTE-LSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLSTNSNITFS 333
            R  +G +  D   FP+G  + L+ ++HS+G LFG Y  RGS TC GR G   HE IDA TY +WGVDY KEDSCNAP +HE A+A+Y  MRDAL +T   + FS
Sbjct:   81 RHPDGTVYADPAKFPSGTLKPLADYVHSKGLLFGTYTDRGSATCAGRPGAANHEDIDAKTYAEWGVDYLKEDSCNAPSNHETAFAEYGRMRDALNATGRPVLFS 184          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A7S0TJB1_HEMAN (Alpha-galactosidase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJB1_HEMAN)

HSP 1 Score: 108 bits (271), Expect = 6.640e-28
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 VDGMVEVDRDANGRLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQ-DHEVAYAQYATMRDALLSTNSNITFS 333
            +D    V R  NG L+PD   FP G   ++ ++HS+G LFGIY  RG+LTC  R G  GHE  DAAT+ +WG+D+ KEDS   P   HEVAY +YA MRDA+ ST   + FS
Sbjct:   53 LDDCWAVGRTYNGLLMPDLWAFPEGIKPVADYVHSQGLLFGIYTDRGALTCQRRPGSLGHEKQDAATFAEWGIDFVKEDSSFNPDVTHEVAYHEYAVMRDAINSTGRPMLFS 164          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A7S1GVM9_HEMAN (Alpha-galactosidase (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GVM9_HEMAN)

HSP 1 Score: 112 bits (281), Expect = 1.090e-27
Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    1 VDGMVEVDRDANGRLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQ-DHEVAYAQYATMRDALLSTNSNITFS 333
            +D    V R  NG L+PD   FP G   ++ ++HS+G LFGIY  RG+LTC  R G  GHE  DAAT+ +WG+D+ KEDSC  P   HEVAY +YA MRDA+ ST   + FS
Sbjct:   56 LDDCWAVGRTYNGLLMPDLWAFPEGIKPVADYVHSQGLLFGIYTDRGALTCQRRPGSLGHEKQDAATFAEWGIDFVKEDSCFNPDVTHEVAYHEYAVMRDAINSTGRPMLFS 167          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A812SLI3_SYMMI (Alpha-galactosidase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SLI3_SYMMI)

HSP 1 Score: 115 bits (288), Expect = 1.240e-27
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   34 NGRLVPDKTGFPNGFTE-LSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLSTNSNITFS 333
            +G +  D   FP+G  + L+ ++HS+G LFG Y  RGS TC GR G   HE IDA TY +WGVDY KEDSCNAP DHE A+A+Y  MRDAL +T   + FS
Sbjct:   84 DGSVYADPAKFPSGTLKPLADYVHSKGLLFGTYTDRGSATCAGRPGAANHEDIDAKTYAEWGVDYLKEDSCNAPSDHETAFAEYGRMRDALNATGRPVLFS 184          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A812RDC1_9DINO (Alpha-galactosidase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812RDC1_9DINO)

HSP 1 Score: 115 bits (288), Expect = 1.250e-27
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   34 NGRLVPDKTGFPNGFTE-LSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLSTNSNITFS 333
            +G +  D   FP+G  + L+ ++HS+G LFG Y  RGS TC GR G   HE IDA TY +WGVDY KEDSCNAP DHE A+A+Y  MRDAL +T   + FS
Sbjct:   84 DGSVYADPAKFPSGTLKPLADYVHSKGLLFGTYTDRGSATCAGRPGAANHEDIDAKTYAEWGVDYLKEDSCNAPSDHETAFAEYGRMRDALNATGRPVLFS 184          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: L1JCX6_GUITC (Alpha-galactosidase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JCX6_GUITC)

HSP 1 Score: 113 bits (282), Expect = 1.690e-27
Identity = 58/112 (51.79%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 VDGMVEVDRDAN-GRLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLSTNSNITFS 333
            +D    V RD    RLV D + FP G   L+ ++HS+GF  GIY  RG LTC GR G  G E +DA T+ DWG+DY KEDSCNA Q+HE A  +Y  MRDAL  T   I FS
Sbjct:  115 IDDCWAVSRDPKTNRLVHDASAFPQGIKGLADFMHSKGFKLGIYTDRGQLTCAGRPGSLGTEELDAQTFADWGIDYLKEDSCNATQEHEGALDEYRKMRDALNKTGRPIYFS 226          
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Match: A0A7S4KM15_GUITH (Alpha-galactosidase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KM15_GUITH)

HSP 1 Score: 113 bits (282), Expect = 3.750e-27
Identity = 58/112 (51.79%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 VDGMVEVDRDAN-GRLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGGRAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLSTNSNITFS 333
            +D    V RD    RLV D + FP G   L+ ++HS+GF  GIY  RG LTC GR G  G E +DA T+ DWG+DY KEDSCNA Q+HE A  +Y  MRDAL  T   I FS
Sbjct:   51 IDDCWAVSRDPKTNRLVHDASAFPQGIKGLADFMHSKGFKLGIYTDRGQLTCAGRPGSLGTEELDAQTFADWGIDYLKEDSCNATQEHEGALDEYRKMRDALNKTGRPIYFS 162          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127543.5552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3B7X5_9VIRI1.800e-2851.33Alpha-galactosidase (Fragment) n=1 Tax=Prasinoderm... [more]
A0A419W598_9BACT3.050e-2850.91Alpha-galactosidase n=1 Tax=Mangrovibacterium diaz... [more]
A0A7S3F7D7_9VIRI5.900e-2851.33Alpha-galactosidase n=1 Tax=Prasinoderma singulare... [more]
A0A812W8Z9_9DINO6.400e-2852.88Alpha-galactosidase n=2 Tax=Symbiodinium TaxID=294... [more]
A0A7S0TJB1_HEMAN6.640e-2850.00Alpha-galactosidase (Fragment) n=1 Tax=Hemiselmis ... [more]
A0A7S1GVM9_HEMAN1.090e-2750.89Alpha-galactosidase (Fragment) n=2 Tax=Hemiselmis ... [more]
A0A812SLI3_SYMMI1.240e-2754.46Alpha-galactosidase n=1 Tax=Symbiodinium microadri... [more]
A0A812RDC1_9DINO1.250e-2754.46Alpha-galactosidase n=4 Tax=Symbiodinium TaxID=294... [more]
L1JCX6_GUITC1.690e-2751.79Alpha-galactosidase n=1 Tax=Guillardia theta (stra... [more]
A0A7S4KM15_GUITH3.750e-2751.79Alpha-galactosidase (Fragment) n=1 Tax=Guillardia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127543contigM-pyrifera_M_contig127543:85..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog55529.EKX46356
KEGG rclassRC00049,RC00059,RC00451
KEGG koko:K07407
KEGG ReactionR01101,R01103,R01104,R01194,R01329,R02926,R03634,R04019,R04470,R05549,R05961,R06091
KEGG Pathwayko00052,ko00561,ko00600,ko00603,map00052,map00561,map00600,map00603
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alpha-galactosidase
EggNOG OGsKOG2366@1,KOG2366@2759
EC3.2.1.22
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size333
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.8688507-UTR-M-pyrifera_M_contig127543:84..931622815789.8688507-UTR-M-pyrifera_M_contig127543:84..93Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127543 85..93 +
1692277570.6408646-UTR-M-pyrifera_M_contig127543:84..931692277570.6408646-UTR-M-pyrifera_M_contig127543:84..93Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127543 85..93 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.885839-CDS-M-pyrifera_M_contig127543:93..4171622815789.885839-CDS-M-pyrifera_M_contig127543:93..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127543 94..417 +
1692277570.6539576-CDS-M-pyrifera_M_contig127543:93..4171692277570.6539576-CDS-M-pyrifera_M_contig127543:93..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127543 94..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127543.5552.1prot_M-pyrifera_M_contig127543.5552.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127543 94..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127543.5552.1

>prot_M-pyrifera_M_contig127543.5552.1 ID=prot_M-pyrifera_M_contig127543.5552.1|Name=mRNA_M-pyrifera_M_contig127543.5552.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MVEVDRDANGRLVPDKTGFPNGFTELSSWLHSEGFLFGIYGCRGSLTCGG
RAGQEGHEYIDAATYVDWGVDYFKEDSCNAPQDHEVAYAQYATMRDALLS
TNSNITFS
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mRNA from alignment at M-pyrifera_M_contig127543:85..417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127543.5552.1 ID=mRNA_M-pyrifera_M_contig127543.5552.1|Name=mRNA_M-pyrifera_M_contig127543.5552.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig127543:85..417+ (Macrocystis pyrifera P11B4 male)
GTAGATGGCATGGTTGAAGTAGATCGTGATGCGAATGGTAGATTGGTGCC AGATAAGACTGGGTTTCCAAACGGATTCACAGAACTATCATCATGGCTAC ACTCAGAGGGCTTTTTGTTCGGGATTTATGGATGTCGAGGATCTCTCACT TGTGGAGGTAGAGCAGGTCAAGAGGGCCACGAGTACATTGATGCAGCTAC TTATGTGGATTGGGGTGTGGATTACTTCAAAGAAGATTCTTGTAACGCAC CTCAGGACCATGAAGTAGCGTATGCACAATACGCAACGATGCGAGACGCA CTCTTGTCTACCAACTCGAACATAACATTTTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127543:85..417+

>mRNA_M-pyrifera_M_contig127543.5552.1 ID=mRNA_M-pyrifera_M_contig127543.5552.1|Name=mRNA_M-pyrifera_M_contig127543.5552.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig127543:85..417+ (Macrocystis pyrifera P11B4 male)
ATGGTTGAAGTAGATCGTGATGCGAATGGTAGATTGGTGCCAGATAAGAC
TGGGTTTCCAAACGGATTCACAGAACTATCATCATGGCTACACTCAGAGG
GCTTTTTGTTCGGGATTTATGGATGTCGAGGATCTCTCACTTGTGGAGGT
AGAGCAGGTCAAGAGGGCCACGAGTACATTGATGCAGCTACTTATGTGGA
TTGGGGTGTGGATTACTTCAAAGAAGATTCTTGTAACGCACCTCAGGACC
ATGAAGTAGCGTATGCACAATACGCAACGATGCGAGACGCACTCTTGTCT
ACCAACTCGAACATAACATTTTCAATGGTTGAAGTAGATCGTGATGCGAA
TGGTAGATTGGTGCCAGATAAGACTGGGTTTCCAAACGGATTCACAGAAC
TATCATCATGGCTACACTCAGAGGGCTTTTTGTTCGGGATTTATGGATGT
CGAGGATCTCTCACTTGTGGAGGTAGAGCAGGTCAAGAGGGCCACGAGTA
CATTGATGCAGCTACTTATGTGGATTGGGGTGTGGATTACTTCAAAGAAG
ATTCTTGTAACGCACCTCAGGACCATGAAGTAGCGTATGCACAATACGCA
ACGATGCGAGACGCACTCTTGTCTACCAACTCGAACATAACATTTTCA
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