mRNA_M-pyrifera_M_contig127536.5551.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127536.5551.1
Unique NamemRNA_M-pyrifera_M_contig127536.5551.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A5C3LAZ2_9AGAR (SCD domain-containing protein n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3LAZ2_9AGAR)

HSP 1 Score: 52.8 bits (125), Expect = 3.890e-6
Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            +E VD VF  RYRDL  ++RA  ++  G+      G  LD   LRY+GW+L+DS   VR  A  A+  V    D
Sbjct:  350 KEFVDGVFVHRYRDLDPNIRAECVKAIGQWFKKYPGHFLDGTYLRYVGWVLSDSNTHVRLEAVKALSGVYEQAD 423          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: F8PSG2_SERL3 (SCD domain-containing protein (Fragment) n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8PSG2_SERL3)

HSP 1 Score: 52.0 bits (123), Expect = 7.250e-6
Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            +EVVD VF  RYRDL  ++RA  +R  G          LD   LRY+GW+L+DS  +VR  A  ++  V    D
Sbjct:  203 KEVVDGVFVHRYRDLDPNIRAECVRAMGLWFRRYPAHFLDASYLRYVGWVLSDSNTQVRLEAVKSLTGVYEQVD 276          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A4Q2D7Z8_9AGAR (SCD domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D7Z8_9AGAR)

HSP 1 Score: 51.6 bits (122), Expect = 9.950e-6
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            +E VD VF  RYRDL  ++RA  ++  G       G  LD   LRY+GW+L+DS   VR  A  A+  V    D
Sbjct:  345 KEFVDGVFVHRYRDLDPNIRAECVKAIGMWFKKYPGHFLDGTYLRYVGWVLSDSNTHVRLEAVKALSGVYEQGD 418          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A8H5HJ66_9AGAR (SCD domain-containing protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HJ66_9AGAR)

HSP 1 Score: 51.6 bits (122), Expect = 9.960e-6
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETV 222
            +E VD VF  RYRDL  ++RA  +R  G       G  LD   LRY+GW+L+DS   VR  A  ++  V
Sbjct:  357 KEFVDGVFVHRYRDLDPNIRAECVRAIGLWFKKYPGHFLDAAYLRYVGWVLSDSNTHVRLEAVKSLSGV 425          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A8H5F498_9AGAR (SCD domain-containing protein n=2 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5F498_9AGAR)

HSP 1 Score: 51.6 bits (122), Expect = 9.960e-6
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            +E VD VF  RYRDL  ++RA  ++  G       G  LD   LRY+GW+L+DS   VR  A  A+  V    D
Sbjct:  358 KEFVDGVFVHRYRDLDPNIRAECVKAIGLWFKKYPGHFLDGAYLRYVGWVLSDSNTSVRLEAVKALSGVYEQAD 431          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A409XP94_PSICY (SCD domain-containing protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409XP94_PSICY)

HSP 1 Score: 51.2 bits (121), Expect = 1.360e-5
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAMGP-LLDTRKLRYLGWLLNDSEDEVRAAAATAVETV 222
            +E VD VF  R+RDL  ++RA  +R  G  L       LD   LRY+GW+L+DS + VR  A  A+  V
Sbjct:  345 KEFVDGVFVHRFRDLDPNIRAECVRAIGLWLRKYPDHFLDAHYLRYVGWVLSDSNNHVRLEAVKALSGV 413          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A4Y7SYE0_9AGAR (SCD domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7SYE0_9AGAR)

HSP 1 Score: 51.2 bits (121), Expect = 1.360e-5
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            +E VD VF  RYRDL  ++RA  ++  G       G  LD   LRY+GW+L+DS   VR  A  A+  V    D
Sbjct:  339 KEFVDGVFVHRYRDLDPNIRAECVKAIGLWFKKYPGHFLDGAYLRYVGWVLSDSNTHVRLEAVRALSGVYEQGD 412          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A8H5BL55_9AGAR (SCD domain-containing protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BL55_9AGAR)

HSP 1 Score: 50.8 bits (120), Expect = 1.860e-5
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAMGP-LLDTRKLRYLGWLLNDSEDEVRAAAATAVETV 222
            +++VD VF  R+RDL  ++RA  +   G  L       LD   LRY+GW+L+D+++ VR  A  A+ +V
Sbjct:  352 KDIVDGVFVHRFRDLDPNIRAECVHALGLWLRKYPDHFLDAHYLRYIGWVLSDTDNHVRLEAVKALSSV 420          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: A0A1R1PK76_ZANCU (Cohesin subunit SA-3 (Fragment) n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PK76_ZANCU)

HSP 1 Score: 50.4 bits (119), Expect = 2.480e-5
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1
Query:    7 GVWEEEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAMG-PLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            G W   V+ ++   RYRD+   +RA  ++  G  +      LL+T+ LRY GWL++D  D+VR AA   V  ++   D
Sbjct:  369 GDW---VLTKILHLRYRDVYDGIRAETIKYLGEWIREDSISLLETKYLRYFGWLMHDDSDKVRHAAVEGVRKIISRGD 443          
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Match: UPI0004409C90 (uncharacterized protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004409C90)

HSP 1 Score: 50.4 bits (119), Expect = 2.540e-5
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1
Query:   19 EEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAM-GPLLDTRKLRYLGWLLNDSEDEVRAAAATAVETVLRAPD 237
            +E  D VF  RYRDL  ++RA  +   G  L       LD + LRY+GW+L+D+   VR  A  A+ ++   PD
Sbjct:  224 KEFFDGVFIHRYRDLDPNIRAECVHAMGEWLKRFPAHFLDGQYLRYIGWVLSDTNIHVRLEAVKALASLYAKPD 297          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127536.5551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A5C3LAZ2_9AGAR3.890e-640.54SCD domain-containing protein n=1 Tax=Coprinopsis ... [more]
F8PSG2_SERL37.250e-640.54SCD domain-containing protein (Fragment) n=2 Tax=S... [more]
A0A4Q2D7Z8_9AGAR9.950e-640.54SCD domain-containing protein n=1 Tax=Candolleomyc... [more]
A0A8H5HJ66_9AGAR9.960e-642.03SCD domain-containing protein n=1 Tax=Tricholomell... [more]
A0A8H5F498_9AGAR9.960e-640.54SCD domain-containing protein n=2 Tax=Tulosesus an... [more]
A0A409XP94_PSICY1.360e-542.03SCD domain-containing protein n=1 Tax=Psilocybe cy... [more]
A0A4Y7SYE0_9AGAR1.360e-540.54SCD domain-containing protein n=1 Tax=Coprinellus ... [more]
A0A8H5BL55_9AGAR1.860e-537.68SCD domain-containing protein n=1 Tax=Psilocybe cf... [more]
A0A1R1PK76_ZANCU2.480e-534.62Cohesin subunit SA-3 (Fragment) n=1 Tax=Zancudomyc... [more]
UPI0004409C902.540e-537.84uncharacterized protein n=1 Tax=Fomitiporia medite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127536contigM-pyrifera_M_contig127536:252..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.8231342-CDS-M-pyrifera_M_contig127536:251..4881622815789.8231342-CDS-M-pyrifera_M_contig127536:251..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127536 252..488 +
1692277570.6224723-CDS-M-pyrifera_M_contig127536:251..4881692277570.6224723-CDS-M-pyrifera_M_contig127536:251..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127536 252..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127536.5551.1prot_M-pyrifera_M_contig127536.5551.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127536 252..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127536.5551.1

>prot_M-pyrifera_M_contig127536.5551.1 ID=prot_M-pyrifera_M_contig127536.5551.1|Name=mRNA_M-pyrifera_M_contig127536.5551.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MRGVWEEEVVDRVFKQRYRDLSGSVRAAVLRVYGRCLAAMGPLLDTRKLR
YLGWLLNDSEDEVRAAAATAVETVLRAPD
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mRNA from alignment at M-pyrifera_M_contig127536:252..488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127536.5551.1 ID=mRNA_M-pyrifera_M_contig127536.5551.1|Name=mRNA_M-pyrifera_M_contig127536.5551.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig127536:252..488+ (Macrocystis pyrifera P11B4 male)
ATGCGTGGTGTTTGGGAAGAGGAAGTGGTTGATCGTGTGTTCAAGCAACG GTATCGTGATTTGTCAGGAAGTGTGCGTGCAGCAGTGTTGCGCGTGTATG GTCGTTGCTTGGCAGCGATGGGTCCATTGTTGGACACCAGGAAATTGCGC TATTTGGGATGGCTCTTGAACGATAGTGAGGATGAAGTACGTGCAGCTGC TGCTACTGCTGTGGAGACTGTGCTTCGTGCTCCAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127536:252..488+

>mRNA_M-pyrifera_M_contig127536.5551.1 ID=mRNA_M-pyrifera_M_contig127536.5551.1|Name=mRNA_M-pyrifera_M_contig127536.5551.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig127536:252..488+ (Macrocystis pyrifera P11B4 male)
ATGCGTGGTGTTTGGGAAGAGGAAGTGGTTGATCGTGTGTTCAAGCAACG
GTATCGTGATTTGTCAGGAAGTGTGCGTGCAGCAGTGTTGCGCGTGTATG
GTCGTTGCTTGGCAGCGATGGGTCCATTGTTGGACACCAGGAAATTGCGC
TATTTGGGATGGCTCTTGAACGATAGTGAGGATGAAGTACGTGCAGCTGC
TGCTACTGCTGTGGAGACTGTGCTTCGTGCTCCAGATATGCGTGGTGTTT
GGGAAGAGGAAGTGGTTGATCGTGTGTTCAAGCAACGGTATCGTGATTTG
TCAGGAAGTGTGCGTGCAGCAGTGTTGCGCGTGTATGGTCGTTGCTTGGC
AGCGATGGGTCCATTGTTGGACACCAGGAAATTGCGCTATTTGGGATGGC
TCTTGAACGATAGTGAGGATGAAGTACGTGCAGCTGCTGCTACTGCTGTG
GAGACTGTGCTTCGTGCTCCAGAT
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