mRNA_M-pyrifera_M_contig127524.5549.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127524.5549.1
Unique NamemRNA_M-pyrifera_M_contig127524.5549.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127524.5549.1 vs. uniprot
Match: A0A0R2S2N6_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Cryomorphaceae bacterium BACL21 MAG-121220-bin10 TaxID=1655592 RepID=A0A0R2S2N6_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 3.280e-6
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    4 GGGAFAPEQMISTKGGAYYALDAGDLDGDGDLDIVAGSHQDAYLAWHRNL 153
            G G F+ +++IST     Y +  GDLD DGDLD+++GS  D  +AW+ NL
Sbjct:  322 GNGTFSSQKIISTSSITPYDVKVGDLDNDGDLDVISGSQNDDKVAWYENL 371
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BLAST of mRNA_M-pyrifera_M_contig127524.5549.1 vs. uniprot
Match: A0A5J4IXE9_9FLAO (Por_Secre_tail domain-containing protein n=1 Tax=Patiriisocius marinus TaxID=1397112 RepID=A0A5J4IXE9_9FLAO)

HSP 1 Score: 50.8 bits (120), Expect = 2.140e-5
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 GGGAFAPEQMISTKGGAYYALDAGDLDGDGDLDIVAGSHQDAYLAWHRN 150
            G G F  +Q+I+T      A+ AGDLD DGD+DIV+ S  D+ LAW+RN
Sbjct:  324 GEGTFDTKQIITTDVEGVVAVAAGDLDNDGDIDIVSVSQSDSKLAWYRN 372
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BLAST of mRNA_M-pyrifera_M_contig127524.5549.1 vs. uniprot
Match: UPI0018440BAA (T9SS type A sorting domain-containing protein n=1 Tax=Tenacibaculum sp. TaxID=1906242 RepID=UPI0018440BAA)

HSP 1 Score: 50.4 bits (119), Expect = 3.010e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   10 GAFAPEQMISTKGGAYYALDAGDLDGDGDLDIVAGSHQDAYLAWHRNL 153
            G+FAPEQ+I +   A + + AGD+DGDGD+D++        +AW+ N+
Sbjct:  342 GSFAPEQIIDSTAFAVWKVSAGDIDGDGDIDVLGSYSSSIRVAWYENI 389
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BLAST of mRNA_M-pyrifera_M_contig127524.5549.1 vs. uniprot
Match: UPI00054FD4B2 (T9SS type A sorting domain-containing protein n=1 Tax=Altibacter lentus TaxID=1223410 RepID=UPI00054FD4B2)

HSP 1 Score: 50.1 bits (118), Expect = 3.950e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    4 GGGAFAPEQMISTKGGAYYALDAGDLDGDGDLDIVAGSHQDAYLAWHRN 150
            G G F P Q+IS    A   + AGDLDGDGD+DI++ S  D  +AW+ N
Sbjct:  159 GQGTFGPAQVISLNTIAARNISAGDLDGDGDIDILSASEGDNKIAWYEN 207
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BLAST of mRNA_M-pyrifera_M_contig127524.5549.1 vs. uniprot
Match: UPI00166A9959 (T9SS type A sorting domain-containing protein n=2 Tax=Psychroflexus salis TaxID=1526574 RepID=UPI00166A9959)

HSP 1 Score: 50.1 bits (118), Expect = 4.200e-5
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   10 GAFAPEQMISTKGGAYYALDAGDLDGDGDLDIVAGSHQDAYLAWHRNL 153
            G F+ E  I+        +DAGDLDGDGD+DIV+ SH D  LAW+ N+
Sbjct:  385 GNFSSENKITNYAYFINHVDAGDLDGDGDMDIVSSSHADHKLAWYPNV 432
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127524.5549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0R2S2N6_9FLAO3.280e-646.00Por_Secre_tail domain-containing protein n=1 Tax=C... [more]
A0A5J4IXE9_9FLAO2.140e-551.02Por_Secre_tail domain-containing protein n=1 Tax=P... [more]
UPI0018440BAA3.010e-541.67T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00054FD4B23.950e-548.98T9SS type A sorting domain-containing protein n=1 ... [more]
UPI00166A99594.200e-550.00T9SS type A sorting domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127524contigM-pyrifera_M_contig127524:53..448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127524.5549.1prot_M-pyrifera_M_contig127524.5549.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127524 53..418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.723621-CDS-M-pyrifera_M_contig127524:52..1751622815789.723621-CDS-M-pyrifera_M_contig127524:52..175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127524 53..175 -
1692277570.5559423-CDS-M-pyrifera_M_contig127524:52..1751692277570.5559423-CDS-M-pyrifera_M_contig127524:52..175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127524 53..175 -
1622815789.7338927-CDS-M-pyrifera_M_contig127524:319..4181622815789.7338927-CDS-M-pyrifera_M_contig127524:319..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127524 320..418 -
1692277570.5794356-CDS-M-pyrifera_M_contig127524:319..4181692277570.5794356-CDS-M-pyrifera_M_contig127524:319..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127524 320..418 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.7446866-UTR-M-pyrifera_M_contig127524:418..4481622815789.7446866-UTR-M-pyrifera_M_contig127524:418..448Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127524 419..448 -
1692277570.5961275-UTR-M-pyrifera_M_contig127524:418..4481692277570.5961275-UTR-M-pyrifera_M_contig127524:418..448Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127524 419..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127524.5549.1

>prot_M-pyrifera_M_contig127524.5549.1 ID=prot_M-pyrifera_M_contig127524.5549.1|Name=mRNA_M-pyrifera_M_contig127524.5549.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MISTKGGAYYALDAGDLDGDGDLDIVAGSHQDAYLAWHRNLGGGTFGAKQ
IIDTNLSTAEQVDAADLDGDGDDD
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mRNA from alignment at M-pyrifera_M_contig127524:53..448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127524.5549.1 ID=mRNA_M-pyrifera_M_contig127524.5549.1|Name=mRNA_M-pyrifera_M_contig127524.5549.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig127524:53..448- (Macrocystis pyrifera P11B4 male)
CTAGGCGGCGGCGCGTTCGCACCCGAGCAGATGATCTCGACGAAGGGAGG
CGCTTACTACGCGCTCGACGCCGGCGATCTCGATGGCGATGGCGACCTCG
ACATCGTGGCGGGCAGCCATCAGGACGCCGTGCTGATCTTGAACCTCGGC
GGCGGAGCGTTTGCGCCGACCGTTGTCTTGGACAATGATCCGCAGTCCTG
TCGCGATATCACCCTGGCCCACGTCGACGGCGATGGTCAGCTCGACGTCG
TTTTCCCGTCGACCTTTGGTGAGTACCTGGCGTGGCATCGAAACCTGGGG
GGCGGAACGTTCGGGGCCAAGCAGATCATCGACACGAACCTGTCCACTGC
GGAGCAGGTGGACGCGGCGGACCTCGACGGGGACGGAGATGACGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127524:53..448-

>mRNA_M-pyrifera_M_contig127524.5549.1 ID=mRNA_M-pyrifera_M_contig127524.5549.1|Name=mRNA_M-pyrifera_M_contig127524.5549.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig127524:53..448- (Macrocystis pyrifera P11B4 male)
ATGATCTCGACGAAGGGAGGCGCTTACTACGCGCTCGACGCCGGCGATCT
CGATGGCGATGGCGACCTCGACATCGTGGCGGGCAGCCATCAGGACGCCA
TGATCTCGACGAAGGGAGGCGCTTACTACGCGCTCGACGCCGGCGATCTC
GATGGCGATGGCGACCTCGACATCGTGGCGGGCAGCCATCAGGACGCCTA
CCTGGCGTGGCATCGAAACCTGGGGGGCGGAACGTTCGGGGCCAAGCAGA
TCATCGACACGAACCTGTCCACTGCGGAGCAGGTGGACGCGGCGGACCTC
GACGGGGACGGAGATGACGACTACCTGGCGTGGCATCGAAACCTGGGGGG
CGGAACGTTCGGGGCCAAGCAGATCATCGACACGAACCTGTCCACTGCGG
AGCAGGTGGACGCGGCGGACCTCGACGGGGACGGAGATGACGAC
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