mRNA_M-pyrifera_M_contig127511.5545.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127511.5545.1
Unique NamemRNA_M-pyrifera_M_contig127511.5545.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127511.5545.1 vs. uniprot
Match: A0A1V9Z0Y7_9STRA (Uncharacterized protein n=2 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z0Y7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.890e-15
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   10 AQLRPVCWDYNTTVNAASPCLDAQGQEHPHCVAIGYHHSAYVVQCGTDFADDTHCGTYIEVHRPG 204
            +Q  P CWD N +VNA S C    G+  P+CV++ Y  +A++VQC   FA D HCGT++E+H+PG
Sbjct:  184 SQSYPACWDNNGSVNALSSCYTFDGRVKPNCVSVAYMQTAFIVQCMGIFALDNHCGTFLELHKPG 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig127511.5545.1 vs. uniprot
Match: A0A485LD33_9STRA (Aste57867_19400 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD33_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.450e-14
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   22 PVCWDYNTTVNAASPCLDAQGQEHPHCVAIGYHHSAYVVQCGTDFADDTHCGTYIEVHRPG 204
            P CWD N+++NA S C    G   P+CV++ Y  + Y+VQC   FA D HCGT++E+H+PG
Sbjct:  196 PACWDSNSSINALSSCHAFDGTTKPNCVSVAYMQTTYIVQCKGKFALDNHCGTFLELHKPG 256
[Close]
BLAST of mRNA_M-pyrifera_M_contig127511.5545.1 vs. uniprot
Match: A0A1W0A0B3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0B3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.030e-12
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 SVCAQLRPVCWDYNTTVNAASPCLDAQGQEHPHCVAIGYHHSAYVVQCGTDFADDTHCGTYIEVHRPG 204
            S+  Q  P CWD N+++NA S C    G+   +CV++ Y  +A+++QC   F  D HCGT++E+H+PG
Sbjct:  180 SMATQSFPNCWDNNSSINALSSCYTFDGRVKLNCVSVAYMQTAFIMQCMGTFGLDNHCGTFLELHKPG 247
[Close]
BLAST of mRNA_M-pyrifera_M_contig127511.5545.1 vs. uniprot
Match: D8LT32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT32_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.260e-11
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   28 CWDYNTTVNAASPCLDAQGQEHPHCVAIGYHHSAYVVQCGTDFADDTHCGTYIEVH 195
            C D N TV+A S C +  G+   HC+A+GY  +A  V CG DFA+D HCGT++E+H
Sbjct:  154 CTDNNQTVDAGSSCQNLAGEVSEHCLAVGYSQTAISVICGGDFAEDDHCGTFLELH 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig127511.5545.1 vs. uniprot
Match: A0A812VMA3_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VMA3_SYMMI)

HSP 1 Score: 66.6 bits (161), Expect = 2.560e-11
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   22 PVCWDYNTTVNAASPCLDAQGQEHPHCVAIGYHHSAYVVQCGTDFADDTHCGTYIEVHRPG 204
            P C D N+++N    C D  G    +C  +GY  +A++  CG++F DD HCGT++E+H+ G
Sbjct:   20 PACVDNNSSLNTLQGCYDIYGNYSSYCAQVGYTQNAFIALCGSEFEDDDHCGTFLEIHQGG 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127511.5545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1V9Z0Y7_9STRA7.890e-1547.69Uncharacterized protein n=2 Tax=Achlya hypogyna Ta... [more]
A0A485LD33_9STRA2.450e-1447.54Aste57867_19400 protein n=1 Tax=Aphanomyces stella... [more]
A0A1W0A0B3_9STRA1.030e-1241.18Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
D8LT32_ECTSI2.260e-1150.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812VMA3_SYMMI2.560e-1139.34Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127511contigM-pyrifera_M_contig127511:276..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.8e-14
Seed eggNOG ortholog157072.XP_008866591.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CM7C@1,2QPIH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.5775797-CDS-M-pyrifera_M_contig127511:275..4791622815789.5775797-CDS-M-pyrifera_M_contig127511:275..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127511 276..479 +
1692277570.4936638-CDS-M-pyrifera_M_contig127511:275..4791692277570.4936638-CDS-M-pyrifera_M_contig127511:275..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127511 276..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127511.5545.1prot_M-pyrifera_M_contig127511.5545.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127511 276..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127511.5545.1

>prot_M-pyrifera_M_contig127511.5545.1 ID=prot_M-pyrifera_M_contig127511.5545.1|Name=mRNA_M-pyrifera_M_contig127511.5545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
SVCAQLRPVCWDYNTTVNAASPCLDAQGQEHPHCVAIGYHHSAYVVQCGT
DFADDTHCGTYIEVHRPG
back to top

mRNA from alignment at M-pyrifera_M_contig127511:276..479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127511.5545.1 ID=mRNA_M-pyrifera_M_contig127511.5545.1|Name=mRNA_M-pyrifera_M_contig127511.5545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig127511:276..479+ (Macrocystis pyrifera P11B4 male)
TCCGTGTGCGCACAGTTGAGGCCGGTGTGTTGGGACTACAACACGACTGT
GAACGCAGCCAGTCCGTGTCTGGACGCGCAAGGGCAGGAACACCCGCATT
GTGTGGCGATTGGGTACCACCACAGCGCGTACGTGGTGCAGTGTGGCACA
GATTTTGCGGACGACACGCACTGTGGGACGTACATCGAGGTGCACCGACC
TGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127511:276..479+

>mRNA_M-pyrifera_M_contig127511.5545.1 ID=mRNA_M-pyrifera_M_contig127511.5545.1|Name=mRNA_M-pyrifera_M_contig127511.5545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig127511:276..479+ (Macrocystis pyrifera P11B4 male)
TCCGTGTGCGCACAGTTGAGGCCGGTGTGTTGGGACTACAACACGACTGT
GAACGCAGCCAGTCCGTGTCTGGACGCGCAAGGGCAGGAACACCCGCATT
GTGTGGCGATTGGGTACCACCACAGCGCGTACGTGGTGCAGTGTGGCACA
GATTTTGCGGACGACACGCACTGTGGGACGTACATCGAGGTGCACCGACC
TGGTTCCGTGTGCGCACAGTTGAGGCCGGTGTGTTGGGACTACAACACGA
CTGTGAACGCAGCCAGTCCGTGTCTGGACGCGCAAGGGCAGGAACACCCG
CATTGTGTGGCGATTGGGTACCACCACAGCGCGTACGTGGTGCAGTGTGG
CACAGATTTTGCGGACGACACGCACTGTGGGACGTACATCGAGGTGCACC
GACCTGGT
back to top