mRNA_M-pyrifera_M_contig127487.5537.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127487.5537.1
Unique NamemRNA_M-pyrifera_M_contig127487.5537.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A4Y2CAC2_ARAVE (Pre-mRNA-splicing factor SYF1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2CAC2_ARAVE)

HSP 1 Score: 170 bits (431), Expect = 4.060e-46
Identity = 79/129 (61.24%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPASAPGEDSMQALERSA 387
            GV  TREIY++A+  LPD Q K MC+++ADLE KLGE+DRARA+Y HCSQ CDP++NPDFW+ W++FEVRHGNEDT REMLRI+RSVQA YNT +NF +A M++A     G       +DSMQ+LE  A
Sbjct:  632 GVTHTREIYQEAIDVLPDAQAKQMCLKFADLERKLGEIDRARAVYSHCSQMCDPRTNPDFWRTWKDFEVRHGNEDTMREMLRIKRSVQATYNTQVNFMSAQMLSAAVAAAGITVPESDKDSMQSLEAQA 760          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A087TLM1_STEMI (Pre-mRNA-splicing factor SYF1 (Fragment) n=1 Tax=Stegodyphus mimosarum TaxID=407821 RepID=A0A087TLM1_STEMI)

HSP 1 Score: 159 bits (402), Expect = 6.150e-46
Identity = 78/129 (60.47%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPASAPGEDSMQALERSA 387
            GV  TR+IYE+A++ L D + K MC+++ADLE KLGE+DRARAIY HCSQ CDP++N DFW +W+EFEVRHGNEDT REMLRI+RSVQA  NT +NF +A M++A +V      +  G+DSMQ LE  A
Sbjct:   32 GVTYTRQIYEQAIEVLSDNEAKQMCLKFADLERKLGEIDRARAIYAHCSQMCDPRTNLDFWNLWKEFEVRHGNEDTMREMLRIKRSVQASVNTQVNFMSAQMLSA-AVAASDGLTDTGKDSMQRLEAQA 159          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A2J7QCS1_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QCS1_9NEOP)

HSP 1 Score: 156 bits (395), Expect = 1.270e-45
Identity = 77/133 (57.89%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPAS-APG-EDSMQALERSAAQ 393
            GVP+TR+IYEKA++ L ++  + MC+++A +E KLGE+DRARAIY +CSQ CDP+   +FW+ W+EFEVRHGNEDT REMLRI+RSVQA YNT +N  +A M++A S  +G  A  APG +D M+ LE  AAQ
Sbjct:   37 GVPKTRQIYEKAIEVLTEENAREMCLRFAKMETKLGEIDRARAIYAYCSQMCDPRVTAEFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMSAQMLSAVSNVSGTVAEFAPGAKDGMRMLEAKAAQ 169          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A1B6KU79_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KU79_9HEMI)

HSP 1 Score: 158 bits (399), Expect = 3.320e-45
Identity = 84/151 (55.63%), Postives = 108/151 (71.52%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPAS-APG-EDSMQALERSAAQAGAGAAFQAAPQPQPAGG 447
            GVP+TR+IYEKA+  L +   + MC ++A++E KLGE+DRARAIY HCSQ CDP+   +FW+ W+EFEVRHGNEDT REMLRI+RSVQA YNT +N  +A M++A S  +G  A  APG +D M+ LE  AA+     AF+    PQ AGG
Sbjct:   39 GVPQTRQIYEKAIDVLQEDNCREMCQRFAEMETKLGEIDRARAIYAHCSQICDPRVTAEFWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMSAQMLSAASNVSGTVADLAPGAKDGMRMLEAKAAEM----AFEDRSAPQVAGG 185          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A2J7QGD4_9NEOP (Uncharacterized protein n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QGD4_9NEOP)

HSP 1 Score: 158 bits (399), Expect = 4.020e-45
Identity = 83/151 (54.97%), Postives = 109/151 (72.19%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPAS-APG-EDSMQALERSAAQAGAGAAFQAAPQPQPAGG 447
            GVP+TR+IYEKA++ L ++  + MC+++A++E KLGE+DRARAIY HCSQ CDP+   +FW+ W +FEVRHGNEDT REMLRI+RSVQA YNT +N  +A M++A S  +G  A  APG +D M+ LE  AAQ    A  +   Q QP GG
Sbjct:   46 GVPKTRQIYEKAIEVLTEENAREMCLRFAEMETKLGEIDRARAIYTHCSQMCDPRVTAEFWQTWMDFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMSAQMLSAASNVSGTVADLAPGAKDGMRMLEAKAAQM---AHLERPAQQQPKGG 193          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A2B4RQF3_STYPI (Pre-mRNA-splicing factor SYF1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RQF3_STYPI)

HSP 1 Score: 168 bits (425), Expect = 4.080e-45
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAAT-SVETGAPASAPGEDSMQALERSA 387
            GV  TREIYEKA++ LPD+Q + MC+++ADLE KLGE+DRARAIY+H SQ  DP++ P FWKVW +FEVRHGNEDTFREMLRI+RSVQAQ+NT +NF +A M+AA  S   GA    P  D MQ LE+ A
Sbjct:  564 GVTHTREIYEKAIEVLPDEQAREMCIRFADLERKLGEIDRARAIYMHSSQMADPRTTPTFWKVWHDFEVRHGNEDTFREMLRIKRSVQAQFNTQVNFMSAQMLAAAASKSAGAGTEEPVSDDMQLLEQQA 693          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: Q4RBC7_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4RBC7_TETNG)

HSP 1 Score: 152 bits (385), Expect = 9.220e-45
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETG 333
            GV  TREIY+KA++ LPD+  + MC++++D+E KLGE+DRARAIY +CSQ CDP+    FW+ W+EFE+RHGNEDT REMLRI+RSVQA YNT +NF ++ M+ AT+  TG
Sbjct:   18 GVTYTREIYQKAIEVLPDEHARDMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATTSSTG 128          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: UPI0018EC49EB (hypothetical protein n=1 Tax=Chromobacterium sp. ASV5 TaxID=2795109 RepID=UPI0018EC49EB)

HSP 1 Score: 152 bits (385), Expect = 1.080e-44
Identity = 66/104 (63.46%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVA 312
            G+P TR IYE+A+  LPD++ K MC+++AD+E +LGE+DRARAIY H SQ+CDP++N DFW  W +FEV+HGNEDTF+EMLRI+RSVQAQYNT +NF A+  +A
Sbjct:   15 GLPSTRPIYERAITALPDEEAKDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNADFWTKWEQFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALA 118          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A428U0Z3_9HYPO (Pre-mRNA-splicing factor syf1 n=2 Tax=Hypocreales TaxID=5125 RepID=A0A428U0Z3_9HYPO)

HSP 1 Score: 160 bits (404), Expect = 1.500e-44
Identity = 75/127 (59.06%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPASAPGEDSMQALER 381
            G+  TR IYE+A+  LPD + K MC+++AD+E +LGE+DRARAIY H SQ+CDP++NPDFW  W +FEV+HGNEDTF+EMLRI+RSVQAQYNT +NF A+  +A +    GA   A   D+M ALER
Sbjct:  226 GLTSTRPIYERAIAALPDAEAKDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPDFWTKWEQFEVQHGNEDTFKEMLRIKRSVQAQYNTDVNFIASQALARSQRRPGAAEDAEVVDAMAALER 352          
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Match: A0A336L7F2_CULSO (CSON004338 protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336L7F2_CULSO)

HSP 1 Score: 165 bits (418), Expect = 2.610e-44
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQYCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAANMVAATSVETGAPASAPGEDSMQALERSAAQ 393
            G+P+TREIYEKA++ LP+K  + MC+++A++E KLGE+DRARAIY HCSQ CDP+   DFW+ W++FEVRHGNEDT REMLRI+RSVQA YNTSIN  AA M+  T+V   A  + P  DSM+ LE  AA+
Sbjct:  640 GLPKTREIYEKAIEDLPEKDSREMCVRFAEMETKLGEIDRARAIYAHCSQMCDPRITADFWQTWKDFEVRHGNEDTMREMLRIKRSVQATYNTSINMMAAQMMHQTAVAANAD-NTPTTDSMKLLEAKAAE 769          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127487.5537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2CAC2_ARAVE4.060e-4661.24Pre-mRNA-splicing factor SYF1 n=1 Tax=Araneus vent... [more]
A0A087TLM1_STEMI6.150e-4660.47Pre-mRNA-splicing factor SYF1 (Fragment) n=1 Tax=S... [more]
A0A2J7QCS1_9NEOP1.270e-4557.89Uncharacterized protein n=1 Tax=Cryptotermes secun... [more]
A0A1B6KU79_9HEMI3.320e-4555.63Uncharacterized protein (Fragment) n=1 Tax=Graphoc... [more]
A0A2J7QGD4_9NEOP4.020e-4554.97Uncharacterized protein n=1 Tax=Cryptotermes secun... [more]
A0A2B4RQF3_STYPI4.080e-4563.85Pre-mRNA-splicing factor SYF1 n=1 Tax=Stylophora p... [more]
Q4RBC7_TETNG9.220e-4560.36(spotted green pufferfish) hypothetical protein (F... [more]
UPI0018EC49EB1.080e-4463.46hypothetical protein n=1 Tax=Chromobacterium sp. A... [more]
A0A428U0Z3_9HYPO1.500e-4459.06Pre-mRNA-splicing factor syf1 n=2 Tax=Hypocreales ... [more]
A0A336L7F2_CULSO2.610e-4461.07CSON004338 protein n=1 Tax=Culicoides sonorensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127487contigM-pyrifera_M_contig127487:1..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score166.4
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog7227.FBpp0086749
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001655,GO:0001709,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007442,GO:0007443,GO:0007507,GO:0007510,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010002,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0035051,GO:0035239,GO:0035295,GO:0042684,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048863,GO:0048869,GO:0055123,GO:0060429,GO:0060562,GO:0060911,GO:0060913,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0071010,GO:0071012,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0072359,GO:0090304,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.It is involved in the biological process described with RNA processing
EggNOG OGs38FF1@33154,3BE39@33208,3CX5M@33213,3SGJ0@50557,41UUB@6656,452ER@7147,45WIN@7214,KOG2047@1,KOG2047@2759
COG Functional cat.A
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.2105272-CDS-M-pyrifera_M_contig127487:0..5041622815789.2105272-CDS-M-pyrifera_M_contig127487:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127487 1..504 -
1692277570.350412-CDS-M-pyrifera_M_contig127487:0..5041692277570.350412-CDS-M-pyrifera_M_contig127487:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127487 1..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127487.5537.1prot_M-pyrifera_M_contig127487.5537.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127487 1..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127487.5537.1

>prot_M-pyrifera_M_contig127487.5537.1 ID=prot_M-pyrifera_M_contig127487.5537.1|Name=mRNA_M-pyrifera_M_contig127487.5537.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
GVPRTREIYEKAVQTLPDKQVKPMCMQYADLECKLGEVDRARAIYVHCSQ
YCDPQSNPDFWKVWREFEVRHGNEDTFREMLRIRRSVQAQYNTSINFTAA
NMVAATSVETGAPASAPGEDSMQALERSAAQAGAGAAFQAAPQPQPAGGM
RPAAPRSEEIDIGDDDDE
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mRNA from alignment at M-pyrifera_M_contig127487:1..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127487.5537.1 ID=mRNA_M-pyrifera_M_contig127487.5537.1|Name=mRNA_M-pyrifera_M_contig127487.5537.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127487:1..504- (Macrocystis pyrifera P11B4 male)
GGAGTCCCACGTACTCGTGAGATCTATGAGAAGGCCGTTCAGACCCTCCC TGACAAGCAGGTGAAGCCCATGTGCATGCAGTATGCAGACTTGGAGTGCA AGCTGGGGGAGGTGGACCGTGCCAGGGCCATCTATGTGCACTGCTCGCAG TACTGTGACCCACAGAGCAACCCAGACTTCTGGAAAGTCTGGAGAGAGTT CGAAGTCCGCCATGGCAACGAAGACACCTTCAGAGAGATGCTCCGCATCA GGAGGAGTGTCCAGGCACAGTACAACACCAGCATCAACTTTACGGCCGCC AACATGGTGGCCGCCACCTCTGTTGAGACAGGCGCTCCCGCAAGCGCCCC TGGCGAGGACAGCATGCAGGCACTGGAGCGGAGTGCAGCTCAGGCAGGCG CTGGCGCTGCTTTCCAGGCGGCTCCTCAGCCCCAGCCTGCTGGCGGCATG CGACCTGCAGCCCCGCGGTCGGAGGAGATCGACATTGGCGACGACGACGA CGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127487:1..504-

>mRNA_M-pyrifera_M_contig127487.5537.1 ID=mRNA_M-pyrifera_M_contig127487.5537.1|Name=mRNA_M-pyrifera_M_contig127487.5537.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig127487:1..504- (Macrocystis pyrifera P11B4 male)
GGAGTCCCACGTACTCGTGAGATCTATGAGAAGGCCGTTCAGACCCTCCC
TGACAAGCAGGTGAAGCCCATGTGCATGCAGTATGCAGACTTGGAGTGCA
AGCTGGGGGAGGTGGACCGTGCCAGGGCCATCTATGTGCACTGCTCGCAG
TACTGTGACCCACAGAGCAACCCAGACTTCTGGAAAGTCTGGAGAGAGTT
CGAAGTCCGCCATGGCAACGAAGACACCTTCAGAGAGATGCTCCGCATCA
GGAGGAGTGTCCAGGCACAGTACAACACCAGCATCAACTTTACGGCCGCC
AACATGGTGGCCGCCACCTCTGTTGAGACAGGCGCTCCCGCAAGCGCCCC
TGGCGAGGACAGCATGCAGGCACTGGAGCGGAGTGCAGCTCAGGCAGGCG
CTGGCGCTGCTTTCCAGGCGGCTCCTCAGCCCCAGCCTGCTGGCGGCATG
CGACCTGCAGCCCCGCGGTCGGAGGAGATCGACATTGGCGACGACGACGA
CGAAGGAGTCCCACGTACTCGTGAGATCTATGAGAAGGCCGTTCAGACCC
TCCCTGACAAGCAGGTGAAGCCCATGTGCATGCAGTATGCAGACTTGGAG
TGCAAGCTGGGGGAGGTGGACCGTGCCAGGGCCATCTATGTGCACTGCTC
GCAGTACTGTGACCCACAGAGCAACCCAGACTTCTGGAAAGTCTGGAGAG
AGTTCGAAGTCCGCCATGGCAACGAAGACACCTTCAGAGAGATGCTCCGC
ATCAGGAGGAGTGTCCAGGCACAGTACAACACCAGCATCAACTTTACGGC
CGCCAACATGGTGGCCGCCACCTCTGTTGAGACAGGCGCTCCCGCAAGCG
CCCCTGGCGAGGACAGCATGCAGGCACTGGAGCGGAGTGCAGCTCAGGCA
GGCGCTGGCGCTGCTTTCCAGGCGGCTCCTCAGCCCCAGCCTGCTGGCGG
CATGCGACCTGCAGCCCCGCGGTCGGAGGAGATCGACATTGGCGACGACG
ACGACGAA
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