mRNA_M-pyrifera_M_contig127483.5536.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127483.5536.1
Unique NamemRNA_M-pyrifera_M_contig127483.5536.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A7L7TEC4_9GENT (30S ribosomal protein S2, chloroplastic n=2 Tax=lamiids TaxID=91888 RepID=A0A7L7TEC4_9GENT)

HSP 1 Score: 282 bits (722), Expect = 2.180e-94
Identity = 133/144 (92.36%), Postives = 139/144 (96.53%), Query Frame = 1 
Query:    1 VWGKMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            +WG+MTRRYWNINLEEMMEAGVHFGHGTRKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDLVFDA SRGKQFLIVGTKNKAADSVA AAI+ARCHYVNKKWLGGMLTNW TTETRLHKFRDLR EQKTGR+NRLPKRDAA+
Sbjct:   33 IWGEMTRRYWNINLEEMMEAGVHFGHGTRKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAGSRGKQFLIVGTKNKAADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKTGRLNRLPKRDAAM 176
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BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: V9ZAH7_9MAGN (Ribosomal protein S2 (Fragment) n=2 Tax=Pentapetalae TaxID=1437201 RepID=V9ZAH7_9MAGN)

HSP 1 Score: 277 bits (708), Expect = 9.340e-94
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:   13 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGK+FLIVGTKNKAADSVARAAIKARCHYVNKKWLGGM TNW TTETRLHKFRDLRTEQKTG +NRLPKRDAA+
Sbjct:    1 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKRFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAM 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A5D2G2Q9_GOSDA (Uncharacterized protein (Fragment) n=2 Tax=rosids TaxID=71275 RepID=A0A5D2G2Q9_GOSDA)

HSP 1 Score: 275 bits (703), Expect = 3.130e-93
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:   13 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            M RRYWNINLEEM+EAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAAS+GKQFLIVGTKNKAADSVARAAI+ARCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG +NRLPKRDAA+
Sbjct:    1 MARRYWNINLEEMLEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASKGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWPTTETRLHKFRDLRTEQKTGGLNRLPKRDAAM 140
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BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A411DA88_9ERIC (30S ribosomal protein S2, chloroplastic n=37 Tax=asterids TaxID=71274 RepID=A0A411DA88_9ERIC)

HSP 1 Score: 275 bits (704), Expect = 3.590e-92
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 1 
Query:   13 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAI+ARCHYVNKKWLGGMLTNW TTETRLH FRDLR EQK GR+NRLPKRDAA+
Sbjct:    1 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHTFRDLRMEQKMGRLNRLPKRDAAM 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: RR2_GOSBA (30S ribosomal protein S2, chloroplastic n=46 Tax=cellular organisms TaxID=131567 RepID=RR2_GOSBA)

HSP 1 Score: 275 bits (703), Expect = 5.090e-92
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:   13 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            M RRYWNINLEEM+EAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAAS+GKQFLIVGTKNKAADSVARAAI+ARCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG +NRLPKRDAA+
Sbjct:    1 MARRYWNINLEEMLEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASKGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWPTTETRLHKFRDLRTEQKTGGLNRLPKRDAAM 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A109UTJ3_PACTE (30S ribosomal protein S2, chloroplastic n=82 Tax=Mesangiospermae TaxID=1437183 RepID=A0A109UTJ3_PACTE)

HSP 1 Score: 275 bits (702), Expect = 7.230e-92
Identity = 131/140 (93.57%), Postives = 135/140 (96.43%), Query Frame = 1 
Query:   13 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDL+FDAASRGKQFLIVGTKNKAADSVA AAI+ARCHYVNKKWLGGMLTNW T ETRLHKFRDLR EQKTGR+NRLPKRDAA+
Sbjct:    1 MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLLFDAASRGKQFLIVGTKNKAADSVASAAIRARCHYVNKKWLGGMLTNWSTIETRLHKFRDLRAEQKTGRLNRLPKRDAAM 140
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A6C0UCN5_9MAGN (30S ribosomal protein S2, chloroplastic n=99 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6C0UCN5_9MAGN)

HSP 1 Score: 278 bits (710), Expect = 7.640e-92
Identity = 133/144 (92.36%), Postives = 137/144 (95.14%), Query Frame = 1 
Query:    1 VWGKMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            V G+MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGK FLIVGTKNKAADSVA AAI+ARCHYVNKKWLGGMLTNW TTETRLHKFRDLR EQKTG+ NRLPKRDAA+
Sbjct:   84 VGGEMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKHFLIVGTKNKAADSVASAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRAEQKTGKFNRLPKRDAAM 227
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A7D0LA41_OLEEU (30S ribosomal protein S2, chloroplastic n=92 Tax=Lamiales TaxID=4143 RepID=A0A7D0LA41_OLEEU)

HSP 1 Score: 275 bits (704), Expect = 1.710e-91
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 1 
Query:   10 KMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            +MTRRYWNINLEEMMEAGVHFGHG RKWNP+MAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVA AAIKARCHYVNKKWLGGMLTNW TTETRLHKFRDLR EQKTGR+NRLPKRDAA+
Sbjct:   47 EMTRRYWNINLEEMMEAGVHFGHGARKWNPKMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVAWAAIKARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKTGRLNRLPKRDAAM 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A890CE42_9FABA (30S ribosomal protein S2, chloroplastic n=4 Tax=Dalbergia clade TaxID=2231389 RepID=A0A890CE42_9FABA)

HSP 1 Score: 275 bits (703), Expect = 1.750e-91
Identity = 127/144 (88.19%), Postives = 135/144 (93.75%), Query Frame = 1 
Query:    1 VWGKMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            +WG MT+RYWNI LEEMMEAG+HFGHGT KWNPRMAPYIS KRKGIHIINLTRTARFLSEACDL FDAA++GKQFLIVGTKNKAADS+ARAA KARCHYVNKKWLGGMLTNWYTTETRL KFRDLRTEQKTGRIN LPK+D A+
Sbjct:   34 LWGSMTKRYWNITLEEMMEAGIHFGHGTSKWNPRMAPYISTKRKGIHIINLTRTARFLSEACDLAFDAANKGKQFLIVGTKNKAADSIARAATKARCHYVNKKWLGGMLTNWYTTETRLRKFRDLRTEQKTGRINNLPKKDTAM 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Match: A0A6M3W1W6_CUCME (30S ribosomal protein S2, chloroplastic n=8 Tax=Cucumis melo TaxID=3656 RepID=A0A6M3W1W6_CUCME)

HSP 1 Score: 274 bits (701), Expect = 2.360e-91
Identity = 131/144 (90.97%), Postives = 138/144 (95.83%), Query Frame = 1 
Query:    1 VWGKMTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV 432
            V G+MTRRYWNI+L EMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLT+TARFLSEACDLVFDAA+RGKQFLIVGTKNKAADSVARAA + RCHYVNKKWLGGMLTNW TTETRLHKFRDLRTEQKTG +NRLPKRDAA+
Sbjct:   22 VGGEMTRRYWNIHLGEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTQTARFLSEACDLVFDAATRGKQFLIVGTKNKAADSVARAATRTRCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGGLNRLPKRDAAM 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127483.5536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7L7TEC4_9GENT2.180e-9492.3630S ribosomal protein S2, chloroplastic n=2 Tax=la... [more]
V9ZAH7_9MAGN9.340e-9495.00Ribosomal protein S2 (Fragment) n=2 Tax=Pentapetal... [more]
A0A5D2G2Q9_GOSDA3.130e-9393.57Uncharacterized protein (Fragment) n=2 Tax=rosids ... [more]
A0A411DA88_9ERIC3.590e-9294.2930S ribosomal protein S2, chloroplastic n=37 Tax=a... [more]
RR2_GOSBA5.090e-9293.5730S ribosomal protein S2, chloroplastic n=46 Tax=c... [more]
A0A109UTJ3_PACTE7.230e-9293.5730S ribosomal protein S2, chloroplastic n=82 Tax=M... [more]
A0A6C0UCN5_9MAGN7.640e-9292.3630S ribosomal protein S2, chloroplastic n=99 Tax=M... [more]
A0A7D0LA41_OLEEU1.710e-9193.6230S ribosomal protein S2, chloroplastic n=92 Tax=L... [more]
A0A890CE42_9FABA1.750e-9188.1930S ribosomal protein S2, chloroplastic n=4 Tax=Da... [more]
A0A6M3W1W6_CUCME2.360e-9190.9730S ribosomal protein S2, chloroplastic n=8 Tax=Cu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127483contigM-pyrifera_M_contig127483:2..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score287.0
Seed ortholog evalue4.9e-75
Seed eggNOG ortholog13333.ERN02618
Preferred namerpoC2
KEGG rclassRC02795
KEGG koko:K02108,ko:K03046
KEGG TC3.A.2.1
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00190,ko00195,ko00230,ko00240,ko01100,ko03020,map00190,map00195,map00230,map00240,map01100,map03020
KEGG ModuleM00157,M00183
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase Rpb1, domain 5
EggNOG OGs38964@33090,3GY32@35493,COG0052@1,COG0356@1,KOG0832@2759,KOG4665@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko00194,ko01000,ko03021,ko03110,ko03400
Exons1
Model size432
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.15511-CDS-M-pyrifera_M_contig127483:1..4211622815789.15511-CDS-M-pyrifera_M_contig127483:1..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127483 2..421 -
1692277570.322523-CDS-M-pyrifera_M_contig127483:1..4211692277570.322523-CDS-M-pyrifera_M_contig127483:1..421Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127483 2..421 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.1687105-UTR-M-pyrifera_M_contig127483:421..4331622815789.1687105-UTR-M-pyrifera_M_contig127483:421..433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127483 422..433 -
1692277570.332901-UTR-M-pyrifera_M_contig127483:421..4331692277570.332901-UTR-M-pyrifera_M_contig127483:421..433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127483 422..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127483.5536.1prot_M-pyrifera_M_contig127483.5536.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127483 2..421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127483.5536.1

>prot_M-pyrifera_M_contig127483.5536.1 ID=prot_M-pyrifera_M_contig127483.5536.1|Name=mRNA_M-pyrifera_M_contig127483.5536.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MTRRYWNINLEEMMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRT
ARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKW
LGGMLTNWYTTETRLHKFRDLRTEQKTGRINRLPKRDAAV
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mRNA from alignment at M-pyrifera_M_contig127483:2..433-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127483.5536.1 ID=mRNA_M-pyrifera_M_contig127483.5536.1|Name=mRNA_M-pyrifera_M_contig127483.5536.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig127483:2..433- (Macrocystis pyrifera P11B4 male)
GTGTGGGGAAAAATGACAAGAAGATATTGGAACATCAATTTGGAAGAGAT
GATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGAAAATGGAATCCTA
GAATGGCACCTTATATCTCTGCAAAGCGTAAAGGTATTCATATTATAAAT
CTTACTAGAACTGCTCGGTTTTTATCAGAAGCTTGTGATTTAGTTTTTGA
TGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAG
CAGCTGATTCAGTAGCACGGGCTGCAATAAAGGCTCGGTGTCATTATGTT
AATAAAAAATGGCTCGGTGGTATGTTAACGAATTGGTATACTACAGAAAC
GAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGACGGGGAGAA
TCAACCGTCTTCCGAAAAGGGATGCGGCTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127483:2..433-

>mRNA_M-pyrifera_M_contig127483.5536.1 ID=mRNA_M-pyrifera_M_contig127483.5536.1|Name=mRNA_M-pyrifera_M_contig127483.5536.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig127483:2..433- (Macrocystis pyrifera P11B4 male)
ATGACAAGAAGATATTGGAACATCAATTTGGAAGAGATGATGGAAGCAGG
AGTTCATTTTGGTCATGGTACTAGAAAATGGAATCCTAGAATGGCACCTT
ATATCTCTGCAAAGCGTAAAGGTATTCATATTATAAATCTTACTAGAACT
GCTCGGTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAG
GGGAAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCTGATTCAG
TAGCACGGGCTGCAATAAAGGCTCGGTGTCATTATGTTAATAAAAAATGG
CTCGGTGGTATGTTAACGAATTGGTATACTACAGAAACGAGACTTCATAA
GTTCAGGGACTTGAGAACGGAACAAAAGACGGGGAGAATCAACCGTCTTC
CGAAAAGGGATGCGGCTGTGATGACAAGAAGATATTGGAACATCAATTTG
GAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGAAAATG
GAATCCTAGAATGGCACCTTATATCTCTGCAAAGCGTAAAGGTATTCATA
TTATAAATCTTACTAGAACTGCTCGGTTTTTATCAGAAGCTTGTGATTTA
GTTTTTGATGCAGCAAGTAGGGGAAAACAATTCTTAATTGTTGGTACCAA
AAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAAGGCTCGGTGTC
ATTATGTTAATAAAAAATGGCTCGGTGGTATGTTAACGAATTGGTATACT
ACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGAACGGAACAAAAGAC
GGGGAGAATCAACCGTCTTCCGAAAAGGGATGCGGCTGTG
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