mRNA_M-pyrifera_M_contig127474.5533.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A538DKH5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DKH5_9ACTN) HSP 1 Score: 96.3 bits (238), Expect = 5.750e-22 Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPL 348
WRA D G+TV IRDLW D L D +VWSEVFA CDAPSVRV WS+ A TD ++PV+++ N+Q + DGGC NT I Q TNTER G L
Sbjct: 146 WRAEFDDPNTGQTVPIRDLWCRGD--RLVDPMVWSEVFARCDAPSVRVRWSD-FAARTDTDTISPVAVSVNYQSYADGGCTNTNVFAEDLGIVQATNTERVTPQGARL 250
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7V4MZ41_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V4MZ41_9ACTN) HSP 1 Score: 95.5 bits (236), Expect = 2.110e-21 Identity = 56/125 (44.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query: 1 IGPSPVRG--WRASITDVERGETVVIRDLWAPHDTDE-----LSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPLPL 354
+ PSP R WRA +TD+ GET IRDL+ P L +VWSEVFADCDAPSV V WS A G + P ++ N+Q DGGC+NT QITN R V GT LP+
Sbjct: 162 VFPSPDRALAWRAEVTDLSSGETAAIRDLYLPIGGARGVRCRLQRPIVWSEVFADCDAPSVTVRWSALRAVTERGIVVRPEALVVNYQSEADGGCSNTDVQPDERGYLQITNVPRRVRQGTVLPV 286
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A431IBP9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IBP9_9ACTN) HSP 1 Score: 94.0 bits (232), Expect = 3.000e-21 Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 7 PSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPL 348
P+ WR S+TD G T V+RDL+ + D + VV+WSEVFA C+ PSV V WS+PTA DG + ++ N+Q H DGGCANT + A +AQ T R+VA GT L
Sbjct: 107 PTGAVRWRGSVTD-SSGTTTVVRDLFV--EGDRIVGVVMWSEVFARCEHPSVGVRWSDPTAVTVDGRLVPIPRVSVNYQSHADGGCANTDSRPDATGVAQWTTVTRTVAQGTVL 217
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A1F2WYE5_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium RBG_16_64_13 TaxID=1797200 RepID=A0A1F2WYE5_9ACTN) HSP 1 Score: 92.8 bits (229), Expect = 9.960e-21 Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 1
Query: 7 PSPVRGWRASITDVERGETVVIRDLWAPHDTDE----LSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAAL-AAGAIAQITNTERSVAAGTPLPL 354
P WRA++ D+ G +V +RDL P D L +VWSEVFADCDAPS+ V WS TA G L P ++ N+Q H GGCANT +++ G I Q+TN R+ G L L
Sbjct: 104 PETPGAWRAAVDDLASGASVTVRDLLPPPDLARSEGYLVRPIVWSEVFADCDAPSLTVRWSELTAVDDTGAVLRPAAVRVNYQFHHAGGCANTNSSVDQTGGIVQVTNVARTTEQGALLEL 224
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: UPI001D11EADE (hypothetical protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D11EADE) HSP 1 Score: 90.9 bits (224), Expect = 8.840e-20 Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPL 348
WR S+T + G V+RDL+ D + VV+WSEVFA CD PSV V WS+P+A +G P+AP ++ N+Q H GGCANT + + + Q TN R+ G L
Sbjct: 158 WRGSVTGPD-GAVTVVRDLYPA--ADRIVGVVMWSEVFARCDHPSVGVRWSDPSAVTLEGDPVAPGRLSVNYQSHAQGGCANTDSRVDGAGVVQWTNAPRTTPQGAVL 262
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7X8UK60_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X8UK60_9ACTN) HSP 1 Score: 90.9 bits (224), Expect = 1.130e-19 Identity = 51/119 (42.86%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 7 PSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDV----VVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAAL-AAGAIAQITNTERSVAAGTPL 348
P WRA +TD+ G IRDL + L +VWSEVFADCDAPSV V WS+ A G+ + P + N+Q E+GGC+NTT + AG + Q+TN R V GT L
Sbjct: 157 PETAGAWRAEVTDLRSGVYSTIRDLLPITSVEGLQSYLVRPIVWSEVFADCDAPSVAVRWSDLAAVDESGSEVRPAGVRVNYQSPEEGGCSNTTVGMDEAGGLLQVTNMPRVVRQGTVL 275
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7Y2N8K9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8K9_9ACTN) HSP 1 Score: 89.4 bits (220), Expect = 2.690e-19 Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 1 IGPSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAA-GAIAQITNTERSVAAGTPL 348
I P P WR SITD+ G V+RDL L+ +VWSEVFA CDA V W++P A +DGT + + +Q DGGC+NTTA ++ G IAQ++ T R +A+ T L
Sbjct: 138 IEPGPANSWRGSITDLSSGSETVVRDLQGGGSA--LAAPMVWSEVFAPCDAQPAAVRWTDPVALTSDGTLVEVSTARVGYQNVGDGGCSNTTAQRSSEGGIAQVSATRRIIASDTTL 252
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A6N7FHN9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FHN9_9ACTN) HSP 1 Score: 89.7 bits (221), Expect = 2.760e-19 Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPLPL 354
WR S+TD+ GE V+RDL A LS ++VWSEVFA C+ PSV V WS A +GT P S+ N+Q H GGCANT +A G + Q TN R G+ L L
Sbjct: 168 WRGSVTDLASGERTVVRDLMARGS--RLSSLMVWSEVFARCEHPSVEVRWSGFEALTEEGTVERPPSVQVNYQDHAGGGCANTDSAAEDGCVLQRTNHPRRHHQGSRLDL 275
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A2N5JUN9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JUN9_9ACTN) HSP 1 Score: 86.7 bits (213), Expect = 3.270e-18 Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTA-ALAAGAIAQITNTERSVAAGTPLPL 354
WR +TD+ GE + IRDL+A D L+ +VWSEVFA C+ PSV V WS A +T G P + N++ GGC NTT+ A A A+ Q+TNT+R V G+ L L
Sbjct: 150 WRGEVTDLVTGEAIAIRDLFAGGD--HLARPLVWSEVFARCEHPSVTVRWSGLEAISTGGEHRRPRGVAVNYEAGAAGGCDNTTSRADGADAVLQVTNTDRQVPQGSVLAL 258
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7X8YWN3_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X8YWN3_9ACTN) HSP 1 Score: 81.6 bits (200), Expect = 2.970e-16 Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1
Query: 25 WRASITDVERGETVVIRDLWAPHDTDELSDV------VVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAAL-AAGAIAQITNTERSVAAGTPLPL 354
WRA +TD+ G IR+L P L++ VVWSEVFA C+APSV V WS A G + P ++ N+Q E GGC+NT+ A+ AG + Q+T+ R V GT L L
Sbjct: 155 WRAEVTDLMPGSVQTIRELTPPPGHPSLANEGYLARPVVWSEVFAGCEAPSVTVRWSGLQAVDEHGRVVRPEAVRVNYQTPEAGGCSNTSVAMDEAGGLLQVTSVPRLVKQGTVLKL 271 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127474.5533.1 >prot_M-pyrifera_M_contig127474.5533.1 ID=prot_M-pyrifera_M_contig127474.5533.1|Name=mRNA_M-pyrifera_M_contig127474.5533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp IGPSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDback to top mRNA from alignment at M-pyrifera_M_contig127474:2..361+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127474.5533.1 ID=mRNA_M-pyrifera_M_contig127474.5533.1|Name=mRNA_M-pyrifera_M_contig127474.5533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig127474:2..361+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127474:2..361+ >mRNA_M-pyrifera_M_contig127474.5533.1 ID=mRNA_M-pyrifera_M_contig127474.5533.1|Name=mRNA_M-pyrifera_M_contig127474.5533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig127474:2..361+ (Macrocystis pyrifera P11B4 male)back to top |