mRNA_M-pyrifera_M_contig127474.5533.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127474.5533.1
Unique NamemRNA_M-pyrifera_M_contig127474.5533.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A538DKH5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DKH5_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 5.750e-22
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPL 348
            WRA   D   G+TV IRDLW   D   L D +VWSEVFA CDAPSVRV WS+  A  TD   ++PV+++ N+Q + DGGC NT        I Q TNTER    G  L
Sbjct:  146 WRAEFDDPNTGQTVPIRDLWCRGD--RLVDPMVWSEVFARCDAPSVRVRWSD-FAARTDTDTISPVAVSVNYQSYADGGCTNTNVFAEDLGIVQATNTERVTPQGARL 250          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7V4MZ41_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V4MZ41_9ACTN)

HSP 1 Score: 95.5 bits (236), Expect = 2.110e-21
Identity = 56/125 (44.80%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    1 IGPSPVRG--WRASITDVERGETVVIRDLWAPHDTDE-----LSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPLPL 354
            + PSP R   WRA +TD+  GET  IRDL+ P          L   +VWSEVFADCDAPSV V WS   A    G  + P ++  N+Q   DGGC+NT          QITN  R V  GT LP+
Sbjct:  162 VFPSPDRALAWRAEVTDLSSGETAAIRDLYLPIGGARGVRCRLQRPIVWSEVFADCDAPSVTVRWSALRAVTERGIVVRPEALVVNYQSEADGGCSNTDVQPDERGYLQITNVPRRVRQGTVLPV 286          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A431IBP9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IBP9_9ACTN)

HSP 1 Score: 94.0 bits (232), Expect = 3.000e-21
Identity = 53/114 (46.49%), Postives = 69/114 (60.53%), Query Frame = 1
Query:    7 PSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPL 348
            P+    WR S+TD   G T V+RDL+   + D +  VV+WSEVFA C+ PSV V WS+PTA   DG  +    ++ N+Q H DGGCANT +   A  +AQ T   R+VA GT L
Sbjct:  107 PTGAVRWRGSVTD-SSGTTTVVRDLFV--EGDRIVGVVMWSEVFARCEHPSVGVRWSDPTAVTVDGRLVPIPRVSVNYQSHADGGCANTDSRPDATGVAQWTTVTRTVAQGTVL 217          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A1F2WYE5_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium RBG_16_64_13 TaxID=1797200 RepID=A0A1F2WYE5_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 9.960e-21
Identity = 52/121 (42.98%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    7 PSPVRGWRASITDVERGETVVIRDLWAPHDTDE----LSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAAL-AAGAIAQITNTERSVAAGTPLPL 354
            P     WRA++ D+  G +V +RDL  P D       L   +VWSEVFADCDAPS+ V WS  TA    G  L P ++  N+Q H  GGCANT +++   G I Q+TN  R+   G  L L
Sbjct:  104 PETPGAWRAAVDDLASGASVTVRDLLPPPDLARSEGYLVRPIVWSEVFADCDAPSLTVRWSELTAVDDTGAVLRPAAVRVNYQFHHAGGCANTNSSVDQTGGIVQVTNVARTTEQGALLEL 224          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: UPI001D11EADE (hypothetical protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D11EADE)

HSP 1 Score: 90.9 bits (224), Expect = 8.840e-20
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPL 348
            WR S+T  + G   V+RDL+     D +  VV+WSEVFA CD PSV V WS+P+A   +G P+AP  ++ N+Q H  GGCANT + +    + Q TN  R+   G  L
Sbjct:  158 WRGSVTGPD-GAVTVVRDLYPA--ADRIVGVVMWSEVFARCDHPSVGVRWSDPSAVTLEGDPVAPGRLSVNYQSHAQGGCANTDSRVDGAGVVQWTNAPRTTPQGAVL 262          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7X8UK60_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X8UK60_9ACTN)

HSP 1 Score: 90.9 bits (224), Expect = 1.130e-19
Identity = 51/119 (42.86%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    7 PSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDV----VVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAAL-AAGAIAQITNTERSVAAGTPL 348
            P     WRA +TD+  G    IRDL      + L       +VWSEVFADCDAPSV V WS+  A    G+ + P  +  N+Q  E+GGC+NTT  +  AG + Q+TN  R V  GT L
Sbjct:  157 PETAGAWRAEVTDLRSGVYSTIRDLLPITSVEGLQSYLVRPIVWSEVFADCDAPSVAVRWSDLAAVDESGSEVRPAGVRVNYQSPEEGGCSNTTVGMDEAGGLLQVTNMPRVVRQGTVL 275          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7Y2N8K9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8K9_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 2.690e-19
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 IGPSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAA-GAIAQITNTERSVAAGTPL 348
            I P P   WR SITD+  G   V+RDL        L+  +VWSEVFA CDA    V W++P A  +DGT +   +    +Q   DGGC+NTTA  ++ G IAQ++ T R +A+ T L
Sbjct:  138 IEPGPANSWRGSITDLSSGSETVVRDLQGGGSA--LAAPMVWSEVFAPCDAQPAAVRWTDPVALTSDGTLVEVSTARVGYQNVGDGGCSNTTAQRSSEGGIAQVSATRRIIASDTTL 252          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A6N7FHN9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FHN9_9ACTN)

HSP 1 Score: 89.7 bits (221), Expect = 2.760e-19
Identity = 51/110 (46.36%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAIAQITNTERSVAAGTPLPL 354
            WR S+TD+  GE  V+RDL A      LS ++VWSEVFA C+ PSV V WS   A   +GT   P S+  N+Q H  GGCANT +A   G + Q TN  R    G+ L L
Sbjct:  168 WRGSVTDLASGERTVVRDLMARGS--RLSSLMVWSEVFARCEHPSVEVRWSGFEALTEEGTVERPPSVQVNYQDHAGGGCANTDSAAEDGCVLQRTNHPRRHHQGSRLDL 275          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A2N5JUN9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JUN9_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 3.270e-18
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   25 WRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTA-ALAAGAIAQITNTERSVAAGTPLPL 354
            WR  +TD+  GE + IRDL+A  D   L+  +VWSEVFA C+ PSV V WS   A +T G    P  +  N++    GGC NTT+ A  A A+ Q+TNT+R V  G+ L L
Sbjct:  150 WRGEVTDLVTGEAIAIRDLFAGGD--HLARPLVWSEVFARCEHPSVTVRWSGLEAISTGGEHRRPRGVAVNYEAGAAGGCDNTTSRADGADAVLQVTNTDRQVPQGSVLAL 258          
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Match: A0A7X8YWN3_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X8YWN3_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 2.970e-16
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   25 WRASITDVERGETVVIRDLWAPHDTDELSDV------VVWSEVFADCDAPSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAAL-AAGAIAQITNTERSVAAGTPLPL 354
            WRA +TD+  G    IR+L  P     L++       VVWSEVFA C+APSV V WS   A    G  + P ++  N+Q  E GGC+NT+ A+  AG + Q+T+  R V  GT L L
Sbjct:  155 WRAEVTDLMPGSVQTIRELTPPPGHPSLANEGYLARPVVWSEVFAGCEAPSVTVRWSGLQAVDEHGRVVRPEAVRVNYQTPEAGGCSNTSVAMDEAGGLLQVTSVPRLVKQGTVLKL 271          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127474.5533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A538DKH5_9ACTN5.750e-2250.00Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7V4MZ41_9ACTN2.110e-2144.80Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A431IBP9_9ACTN3.000e-2146.49Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A1F2WYE5_9ACTN9.960e-2142.98Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
UPI001D11EADE8.840e-2043.52hypothetical protein n=1 Tax=Aquihabitans sp. Kera... [more]
A0A7X8UK60_9ACTN1.130e-1942.86Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7Y2N8K9_9ACTN2.690e-1942.74Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A6N7FHN9_9ACTN2.760e-1946.36Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A2N5JUN9_9ACTN3.270e-1845.05Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7X8YWN3_9ACTN2.970e-1641.88Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127474contigM-pyrifera_M_contig127474:2..361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.0418456-CDS-M-pyrifera_M_contig127474:1..3611622815789.0418456-CDS-M-pyrifera_M_contig127474:1..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127474 2..361 +
1692277570.2893002-CDS-M-pyrifera_M_contig127474:1..3611692277570.2893002-CDS-M-pyrifera_M_contig127474:1..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127474 2..361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127474.5533.1prot_M-pyrifera_M_contig127474.5533.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127474 2..361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127474.5533.1

>prot_M-pyrifera_M_contig127474.5533.1 ID=prot_M-pyrifera_M_contig127474.5533.1|Name=mRNA_M-pyrifera_M_contig127474.5533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
IGPSPVRGWRASITDVERGETVVIRDLWAPHDTDELSDVVVWSEVFADCD
APSVRVEWSNPTATATDGTPLAPVSMTTNFQRHEDGGCANTTAALAAGAI
AQITNTERSVAAGTPLPLG*
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mRNA from alignment at M-pyrifera_M_contig127474:2..361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127474.5533.1 ID=mRNA_M-pyrifera_M_contig127474.5533.1|Name=mRNA_M-pyrifera_M_contig127474.5533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig127474:2..361+ (Macrocystis pyrifera P11B4 male)
ATCGGGCCCTCACCGGTCCGTGGTTGGCGAGCTTCGATCACCGACGTCGA GCGGGGCGAGACCGTCGTCATCCGAGATCTCTGGGCTCCCCACGACACCG ACGAGCTCAGCGACGTCGTCGTCTGGAGCGAGGTGTTCGCCGACTGTGAT GCCCCCAGCGTTCGTGTCGAGTGGTCGAACCCCACCGCGACCGCCACCGA TGGAACACCGCTCGCACCAGTGTCGATGACCACGAACTTCCAGCGCCACG AAGACGGCGGCTGTGCCAACACCACCGCCGCGTTGGCCGCCGGCGCCATC GCTCAGATCACCAACACCGAACGGTCCGTCGCCGCCGGCACTCCCCTGCC GCTCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127474:2..361+

>mRNA_M-pyrifera_M_contig127474.5533.1 ID=mRNA_M-pyrifera_M_contig127474.5533.1|Name=mRNA_M-pyrifera_M_contig127474.5533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig127474:2..361+ (Macrocystis pyrifera P11B4 male)
ATCGGGCCCTCACCGGTCCGTGGTTGGCGAGCTTCGATCACCGACGTCGA
GCGGGGCGAGACCGTCGTCATCCGAGATCTCTGGGCTCCCCACGACACCG
ACGAGCTCAGCGACGTCGTCGTCTGGAGCGAGGTGTTCGCCGACTGTGAT
GCCCCCAGCGTTCGTGTCGAGTGGTCGAACCCCACCGCGACCGCCACCGA
TGGAACACCGCTCGCACCAGTGTCGATGACCACGAACTTCCAGCGCCACG
AAGACGGCGGCTGTGCCAACACCACCGCCGCGTTGGCCGCCGGCGCCATC
GCTCAGATCACCAACACCGAACGGTCCGTCGCCGCCGGCACTCCCCTGCC
GCTCGGCTGAATCGGGCCCTCACCGGTCCGTGGTTGGCGAGCTTCGATCA
CCGACGTCGAGCGGGGCGAGACCGTCGTCATCCGAGATCTCTGGGCTCCC
CACGACACCGACGAGCTCAGCGACGTCGTCGTCTGGAGCGAGGTGTTCGC
CGACTGTGATGCCCCCAGCGTTCGTGTCGAGTGGTCGAACCCCACCGCGA
CCGCCACCGATGGAACACCGCTCGCACCAGTGTCGATGACCACGAACTTC
CAGCGCCACGAAGACGGCGGCTGTGCCAACACCACCGCCGCGTTGGCCGC
CGGCGCCATCGCTCAGATCACCAACACCGAACGGTCCGTCGCCGCCGGCA
CTCCCCTGCCGCTCGGCTGA
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