mRNA_M-pyrifera_M_contig127446.5525.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: D7FRJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ8_ECTSI) HSP 1 Score: 144 bits (363), Expect = 6.880e-40 Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VSITKVWEVVMYGFEAMWP GRTELDGRSMGDVWEHSALP DG GWSNLVPFHKLSQWMTYSLMEPLQ
Sbjct: 246 VSITKVWEVVMYGFEAMWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQ 313
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A835ZFF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF8_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.960e-30 Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPK--GRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPL 201
VS+T +WEVVMYGFEAMWP GR LDGRSMGDVW+HSALP DG W L+PFHKLSQW+T+SLMEPL
Sbjct: 242 VSLTSLWEVVMYGFEAMWPADGGRVSLDGRSMGDVWKHSALPEDGTNWGQLIPFHKLSQWLTFSLMEPL 310
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A7S2XZM7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZM7_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.010e-23 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDG--DGWSNLVPFHKLSQWMTYSLMEPLQ 204
+S +W+VVM+GFEA+WP GR E+DG +MGDVW HSA+ ++ D + LV FHKLSQW+TYSLMEPL+
Sbjct: 3 LSTHSIWKVVMFGFEAIWPSGRLEIDGHNMGDVWPHSAISKEDNDDPGAGLVCFHKLSQWLTYSLMEPLK 72
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A1E3Q7J9_LIPST (UBC core domain-containing protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3Q7J9_LIPST) HSP 1 Score: 96.3 bits (238), Expect = 1.170e-21 Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VS+ VW+V+M G +WPKGRT L+G S+GD W S++P+DG+ W +VPFHKLSQW+ YS++ PL+
Sbjct: 235 VSVATVWDVIMTGLNPIWPKGRTALNGVSLGDAWSCSSMPQDGEEWETIVPFHKLSQWLCYSILVPLE 302
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: M4BXD3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXD3_HYAAE) HSP 1 Score: 89.4 bits (220), Expect = 1.190e-20 Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VSIT +W+VV+YG + +WP+ RT +DG++MGDVWE LP + + V FHKLSQW+TYSLMEPLQ
Sbjct: 15 VSITDLWKVVVYGLQDIWPESRTRIDGQNMGDVWELPYLP-EHEKAGRFVSFHKLSQWLTYSLMEPLQ 81
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A7S3DLV2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DLV2_9EUKA) HSP 1 Score: 88.6 bits (218), Expect = 3.330e-20 Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPR-DGDGWSN---LVPFHKLSQWMTYSLMEPLQ 204
+ + +W+VV+ GFEA+WP+GRT++DG S+GD W H AL +G+ +VPFHKLSQW+TYSLMEPLQ
Sbjct: 27 MEVEALWQVVIEGFEAVWPEGRTKVDGYSLGDAWHHPALVGYKQEGYKQEDAVVPFHKLSQWLTYSLMEPLQ 98
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: W2QCQ7_PHYPN (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=W2QCQ7_PHYPN) HSP 1 Score: 91.7 bits (226), Expect = 3.950e-20 Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VSIT +W+VV+YG + +WP RT++DG++MGDVWE S LP + + V FHKLSQW+TYSLMEPLQ
Sbjct: 279 VSITDLWKVVLYGLQDIWPASRTQIDGQNMGDVWELSYLP-EHEKAGKFVSFHKLSQWLTYSLMEPLQ 345
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A5D6Y127_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y127_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.420e-20 Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VSIT++W VV+YG + +WP RT L G++MGDVWE S LP D V FHKLSQW+TYSLMEPLQ
Sbjct: 235 VSITELWRVVVYGLQDIWPDSRTRLGGQNMGDVWELSYLPEDEKA-GKFVSFHKLSQWLTYSLMEPLQ 301
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: G4YF62_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YF62_PHYSP) HSP 1 Score: 91.3 bits (225), Expect = 4.450e-20 Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VSIT++W+VV+YG + +WP+ RT + G++MGDVWE S LP + + LV FHKLSQW+TYSLMEPLQ
Sbjct: 236 VSITQLWKVVLYGLQDIWPESRTRIGGQNMGDVWELSYLP-EHEKAGKLVSFHKLSQWLTYSLMEPLQ 302
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: H3GZ97_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZ97_PHYRM) HSP 1 Score: 89.7 bits (221), Expect = 1.440e-19 Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1
Query: 1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
VSIT++W+VV+YG + +WP+ RT + G++MGDVWE S LP + + V FHKLSQW+TYSLMEPLQ
Sbjct: 217 VSITELWKVVLYGLQDIWPESRTRIGGQNMGDVWELSYLP-EHEKAGKFVSFHKLSQWLTYSLMEPLQ 283 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127446.5525.1 >prot_M-pyrifera_M_contig127446.5525.1 ID=prot_M-pyrifera_M_contig127446.5525.1|Name=mRNA_M-pyrifera_M_contig127446.5525.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp MYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTback to top mRNA from alignment at M-pyrifera_M_contig127446:196..399+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127446.5525.1 ID=mRNA_M-pyrifera_M_contig127446.5525.1|Name=mRNA_M-pyrifera_M_contig127446.5525.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig127446:196..399+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127446:196..399+ >mRNA_M-pyrifera_M_contig127446.5525.1 ID=mRNA_M-pyrifera_M_contig127446.5525.1|Name=mRNA_M-pyrifera_M_contig127446.5525.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig127446:196..399+ (Macrocystis pyrifera P11B4 male)back to top |