mRNA_M-pyrifera_M_contig127446.5525.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127446.5525.1
Unique NamemRNA_M-pyrifera_M_contig127446.5525.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: D7FRJ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRJ8_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 6.880e-40
Identity = 65/68 (95.59%), Postives = 65/68 (95.59%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VSITKVWEVVMYGFEAMWP GRTELDGRSMGDVWEHSALP DG GWSNLVPFHKLSQWMTYSLMEPLQ
Sbjct:  246 VSITKVWEVVMYGFEAMWPAGRTELDGRSMGDVWEHSALPDDGSGWSNLVPFHKLSQWMTYSLMEPLQ 313          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A835ZFF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.960e-30
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPK--GRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPL 201
            VS+T +WEVVMYGFEAMWP   GR  LDGRSMGDVW+HSALP DG  W  L+PFHKLSQW+T+SLMEPL
Sbjct:  242 VSLTSLWEVVMYGFEAMWPADGGRVSLDGRSMGDVWKHSALPEDGTNWGQLIPFHKLSQWLTFSLMEPL 310          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A7S2XZM7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZM7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.010e-23
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDG--DGWSNLVPFHKLSQWMTYSLMEPLQ 204
            +S   +W+VVM+GFEA+WP GR E+DG +MGDVW HSA+ ++   D  + LV FHKLSQW+TYSLMEPL+
Sbjct:    3 LSTHSIWKVVMFGFEAIWPSGRLEIDGHNMGDVWPHSAISKEDNDDPGAGLVCFHKLSQWLTYSLMEPLK 72          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A1E3Q7J9_LIPST (UBC core domain-containing protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3Q7J9_LIPST)

HSP 1 Score: 96.3 bits (238), Expect = 1.170e-21
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VS+  VW+V+M G   +WPKGRT L+G S+GD W  S++P+DG+ W  +VPFHKLSQW+ YS++ PL+
Sbjct:  235 VSVATVWDVIMTGLNPIWPKGRTALNGVSLGDAWSCSSMPQDGEEWETIVPFHKLSQWLCYSILVPLE 302          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: M4BXD3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXD3_HYAAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-20
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VSIT +W+VV+YG + +WP+ RT +DG++MGDVWE   LP + +     V FHKLSQW+TYSLMEPLQ
Sbjct:   15 VSITDLWKVVVYGLQDIWPESRTRIDGQNMGDVWELPYLP-EHEKAGRFVSFHKLSQWLTYSLMEPLQ 81          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A7S3DLV2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DLV2_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 3.330e-20
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPR-DGDGWSN---LVPFHKLSQWMTYSLMEPLQ 204
            + +  +W+VV+ GFEA+WP+GRT++DG S+GD W H AL     +G+     +VPFHKLSQW+TYSLMEPLQ
Sbjct:   27 MEVEALWQVVIEGFEAVWPEGRTKVDGYSLGDAWHHPALVGYKQEGYKQEDAVVPFHKLSQWLTYSLMEPLQ 98          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: W2QCQ7_PHYPN (Uncharacterized protein n=20 Tax=Phytophthora TaxID=4783 RepID=W2QCQ7_PHYPN)

HSP 1 Score: 91.7 bits (226), Expect = 3.950e-20
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VSIT +W+VV+YG + +WP  RT++DG++MGDVWE S LP + +     V FHKLSQW+TYSLMEPLQ
Sbjct:  279 VSITDLWKVVLYGLQDIWPASRTQIDGQNMGDVWELSYLP-EHEKAGKFVSFHKLSQWLTYSLMEPLQ 345          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: A0A5D6Y127_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y127_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.420e-20
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VSIT++W VV+YG + +WP  RT L G++MGDVWE S LP D       V FHKLSQW+TYSLMEPLQ
Sbjct:  235 VSITELWRVVVYGLQDIWPDSRTRLGGQNMGDVWELSYLPEDEKA-GKFVSFHKLSQWLTYSLMEPLQ 301          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: G4YF62_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YF62_PHYSP)

HSP 1 Score: 91.3 bits (225), Expect = 4.450e-20
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VSIT++W+VV+YG + +WP+ RT + G++MGDVWE S LP + +    LV FHKLSQW+TYSLMEPLQ
Sbjct:  236 VSITQLWKVVLYGLQDIWPESRTRIGGQNMGDVWELSYLP-EHEKAGKLVSFHKLSQWLTYSLMEPLQ 302          
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Match: H3GZ97_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZ97_PHYRM)

HSP 1 Score: 89.7 bits (221), Expect = 1.440e-19
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 VSITKVWEVVMYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMTYSLMEPLQ 204
            VSIT++W+VV+YG + +WP+ RT + G++MGDVWE S LP + +     V FHKLSQW+TYSLMEPLQ
Sbjct:  217 VSITELWKVVLYGLQDIWPESRTRIGGQNMGDVWELSYLP-EHEKAGKFVSFHKLSQWLTYSLMEPLQ 283          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127446.5525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRJ8_ECTSI6.880e-4095.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZFF8_9STRA1.960e-3075.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XZM7_9STRA2.010e-2360.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1E3Q7J9_LIPST1.170e-2154.41UBC core domain-containing protein n=1 Tax=Lipomyc... [more]
M4BXD3_HYAAE1.190e-2058.82Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S3DLV2_9EUKA3.330e-2055.56Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
W2QCQ7_PHYPN3.950e-2060.29Uncharacterized protein n=20 Tax=Phytophthora TaxI... [more]
A0A5D6Y127_9STRA4.420e-2061.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
G4YF62_PHYSP4.450e-2060.29Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
H3GZ97_PHYRM1.440e-1958.82Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127446contigM-pyrifera_M_contig127446:196..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog2880.D7FRJ8
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824
EggNOG free text desc.Protein of unknown function (DUF1688)
EggNOG OGs28IT5@1,2QR4F@2759
Ec32 ortholog descriptionProtein of unknown function DUF1688
Ec32 orthologEc-09_000190.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.6256065-UTR-M-pyrifera_M_contig127446:195..2251622815788.6256065-UTR-M-pyrifera_M_contig127446:195..225Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127446 196..225 +
1692277570.0711434-UTR-M-pyrifera_M_contig127446:195..2251692277570.0711434-UTR-M-pyrifera_M_contig127446:195..225Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127446 196..225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.6365697-CDS-M-pyrifera_M_contig127446:225..3991622815788.6365697-CDS-M-pyrifera_M_contig127446:225..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127446 226..399 +
1692277570.0838394-CDS-M-pyrifera_M_contig127446:225..3991692277570.0838394-CDS-M-pyrifera_M_contig127446:225..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127446 226..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127446.5525.1prot_M-pyrifera_M_contig127446.5525.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127446 226..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127446.5525.1

>prot_M-pyrifera_M_contig127446.5525.1 ID=prot_M-pyrifera_M_contig127446.5525.1|Name=mRNA_M-pyrifera_M_contig127446.5525.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MYGFEAMWPKGRTELDGRSMGDVWEHSALPRDGDGWSNLVPFHKLSQWMT
YSLMEPLQ
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mRNA from alignment at M-pyrifera_M_contig127446:196..399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127446.5525.1 ID=mRNA_M-pyrifera_M_contig127446.5525.1|Name=mRNA_M-pyrifera_M_contig127446.5525.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig127446:196..399+ (Macrocystis pyrifera P11B4 male)
GTGTCCATCACAAAAGTGTGGGAGGTGGTCATGTATGGCTTCGAGGCCAT GTGGCCAAAGGGGCGGACAGAGCTAGACGGGCGCAGCATGGGCGACGTAT GGGAGCACTCTGCTTTGCCGAGAGACGGTGACGGCTGGTCGAACCTGGTG CCCTTCCACAAGCTGTCGCAGTGGATGACGTACTCCCTCATGGAGCCTTT GCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127446:196..399+

>mRNA_M-pyrifera_M_contig127446.5525.1 ID=mRNA_M-pyrifera_M_contig127446.5525.1|Name=mRNA_M-pyrifera_M_contig127446.5525.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig127446:196..399+ (Macrocystis pyrifera P11B4 male)
ATGTATGGCTTCGAGGCCATGTGGCCAAAGGGGCGGACAGAGCTAGACGG
GCGCAGCATGGGCGACGTATGGGAGCACTCTGCTTTGCCGAGAGACGGTG
ACGGCTGGTCGAACCTGGTGCCCTTCCACAAGCTGTCGCAGTGGATGACG
TACTCCCTCATGGAGCCTTTGCAGATGTATGGCTTCGAGGCCATGTGGCC
AAAGGGGCGGACAGAGCTAGACGGGCGCAGCATGGGCGACGTATGGGAGC
ACTCTGCTTTGCCGAGAGACGGTGACGGCTGGTCGAACCTGGTGCCCTTC
CACAAGCTGTCGCAGTGGATGACGTACTCCCTCATGGAGCCTTTGCAG
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