mRNA_M-pyrifera_M_contig127384.5518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127384.5518.1
Unique NamemRNA_M-pyrifera_M_contig127384.5518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A2D9JKI8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9JKI8_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 1.500e-31
Identity = 81/168 (48.21%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF E++W+ P  P  + T V QI+  A R+  N+ +D G  GAL   + AL  AL A+  AA       RNET AA K ++L    A +ERA  R PM  +V +A LA A+PD+ IVV+E+ITA+ DL  +F   GA DFY GRGGGIGQG+ GALGV LA P R V+
Sbjct:  267 PFFEDVWYAPGLPFAAHTRVVQIEESAERLGRNFALDAGAVGALQPSVAALLDALPAQTXAASG-----RNETLAAEKQSSLEAQTARVERAAHRQPMPMSVVMAXLAAAVPDETIVVDESITASIDLAASFQFRGAGDFYSGRGGGIGQGLPGALGVQLARPDRPVL 429          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A2E9Y843_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y843_9PROT)

HSP 1 Score: 122 bits (306), Expect = 2.030e-29
Identity = 77/168 (45.83%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF EE+WF P  P P    V Q++  A R+++N+ VD G+ G LP  L AL  AL+A     ++ AA ARNE  A+   AA A   A  +RA  R PMS   A+A L    PD  +VV EAITA  DL  AF  A   D+  GRGGGIGQG+AGA+G  +A P R ++
Sbjct:  274 PFFEEVWFTPGTPFPGGAAVLQVEETAGRMSHNHTVDAGLVGHLPTSLAALAKALNAAR--GYQVAAKARNEALASESEAATAAYQARSQRAWDRDPMSMARAMAELRVGTPDGTVVVEEAITAGLDLAQAFEFAAPGDYLSGRGGGIGQGLAGAIGAKVAQPDRPLL 439          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A521M7H0_9HYPH (Thiamine pyrophosphate-binding protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M7H0_9HYPH)

HSP 1 Score: 121 bits (303), Expect = 5.370e-29
Identity = 73/168 (43.45%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF EE+W+ P +P P+     QI++  +R+AYN+ +D GV   +   L AL+ AL+  A   F AAA  RN    A K +  A   A +E+A +RTP S   A+A +    P++ I+ +E ITA  DL   F  AGA D++ GRGGGIGQG+AGA+GVA+A P+R V+
Sbjct:  274 PFFEEVWYAPGSPFPAGCKALQIEAAPSRLAYNFALDAGVVADVGAGLAALDVALATVAGKEFDAAAAKRNAALQALKESEAAAQKARVEKAWARTPTSMARAMAEIRAGTPENAIMADETITANLDLFKTFTFAGADDYFSGRGGGIGQGLAGAIGVAVAQPKRPVL 441          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A5C8PF57_9HYPH (Thiamine pyrophosphate-binding protein n=1 Tax=Vineibacter terrae TaxID=2586908 RepID=A0A5C8PF57_9HYPH)

HSP 1 Score: 120 bits (302), Expect = 7.400e-29
Identity = 73/168 (43.45%), Postives = 100/168 (59.52%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF EE+W+   +P P    V Q++    R+A+N+    G+ G +  +LQA++ A++A A   +RAAA+ R       K A  A   A +E+A SR P+S   ALA +   LP D +VV+E+ITA  DL  AF      D+Y GRGGGIGQG+AG LGV LAHP R V+
Sbjct:  274 PFFEEVWYAAGDPFPDGAAVIQLEESHTRLAFNFAPQAGLVGRMDHLLQAVDDAVAAGADDGYRAAAMRRGAALKTAKEADAAAYRARVEKAWSRMPISMPRALAEIRAGLPADAVVVDESITANIDLARAFDFTRPGDYYSGRGGGIGQGLAGVLGVKLAHPDRPVV 441          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A2E5M4N2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M4N2_9GAMM)

HSP 1 Score: 120 bits (301), Expect = 1.020e-28
Identity = 74/168 (44.05%), Postives = 102/168 (60.71%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF EEIW+D ++P+   T +AQI+S   R+A N+ +D+G+ G L   + A N  L ARA  AF +   AR    AA KAAA A +   +      +PM+   A+  L+RALP + IVV+E+ITA+ D+   F      DFY   GGGIGQGIAGA+GV +A P+R V+
Sbjct:  274 PFFEEIWYDDVSPVAEGTKLAQIESSHERLAANFSLDLGLVGNLATTIPAANARLKARANDAFTSEVRARRGAMAAAKAAADAAVQERLAALADASPMTPANAIDALSRALPPETIVVDESITASLDVGSKFDYTAPGDFYAAAGGGIGQGIAGAIGVQVAQPERPVL 441          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A5C5S8E8_9HYPH (Thiamine pyrophosphate-binding protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5S8E8_9HYPH)

HSP 1 Score: 119 bits (299), Expect = 1.930e-28
Identity = 68/168 (40.48%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF E++W+   +P P   +V Q++    R+AYNY    G+ G L   L+A++ ++ A A  ++R AA  RN    A K    A+  A +++A +R PMS   A++ +  A+P + +VV+E+ITA  DL  AF  + A D+Y GRGGGIGQG+AGA+G  +AHP R V+
Sbjct:  274 PFFEDVWYAAGDPFPDGAVVVQLEESPQRLAYNYAPQAGLVGQLQHTLRAVHDSVGASADDSYRTAAARRNAALKAAKDDETASYQARVQKAWNRLPMSMARAMSEIRAAVPANTVVVDESITANIDLARAFEFSKAGDYYSGRGGGIGQGLAGAIGAKVAHPDRVVV 441          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A512NR78_9HYPH (Benzoylformate decarboxylase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A512NR78_9HYPH)

HSP 1 Score: 118 bits (296), Expect = 4.930e-28
Identity = 77/168 (45.83%), Postives = 100/168 (59.52%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF EE+W+ P +P P+   V QI++   R+AYN+ VD GV   +   L+AL    +    AA RA    R +   A K A  A   A +E+A SRTP S    +A L  A P DV+VV+E ITA  DL   F  +GA D+Y GRGGGIGQG+AGALGVA+A P R ++
Sbjct:  274 PFFEEVWYGPGSPFPAGCKVLQIEAAPPRMAYNFAVDAGVIADVDASLEALWQTTTGINGAAARA----RQDAFRAQKQAEDAAQKARVEKAWSRTPTSMARVMAELKAASPADVVVVDETITANLDLFKTFTFSGAGDYYSGRGGGIGQGVAGALGVAVAEPGRPIL 437          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: UPI00201C8A1F (thiamine pyrophosphate-binding protein n=1 Tax=Bradyrhizobium sp. BRP56 TaxID=2793819 RepID=UPI00201C8A1F)

HSP 1 Score: 118 bits (296), Expect = 5.090e-28
Identity = 74/168 (44.05%), Postives = 101/168 (60.12%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF E+IWF P   IP    V QI++ A R+A N  +D G+ G +   + AL+ A+ A+A A FR AA  RN   A  +A       A +E++  R P +     A L R LPDDV++V+E+ITA+ DL  AF   G  D++ GRGGGIGQG+AGA+GV +A P R V+
Sbjct:  274 PFFEDIWFAPGGHIPDGASVLQIEASAERLALNNRLDAGIVGDIAVSINALSDAVRAKAAADFRQAAQGRNAALAELQAKEKEAYRARVEKSWDRQPTAMPRLTAELRRGLPDDVVIVDESITASLDLARAFDYRGFGDYFGGRGGGIGQGLAGAIGVKVAMPDRPVV 441          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A521QT04_9HYPH (Thiamine pyrophosphate-binding protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A521QT04_9HYPH)

HSP 1 Score: 118 bits (295), Expect = 6.790e-28
Identity = 75/168 (44.64%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQRRVI 504
            PF EE+W+ P +P  + T V QI++  +R+AYN+ +D GV   +   L+AL +AL A+  A  +     RN+   A K A  A   A +E+A +RTP S   A+A +    P DVIVV+E ITA  DL  AF  AG  D+Y GRGGGIGQG++GA+GVA+A  +R V+
Sbjct:  274 PFFEEVWYAPGSPFAAGTKVLQIEAAPSRLAYNFALDAGVVSDVGAGLEALMSALGAQEVAGAKQ----RNDALKAQKEAEDAAQKARVEKAWARTPTSMARAMAEIRAGAPKDVIVVDETITANLDLFKAFTFAGPGDYYSGRGGGIGQGLSGAIGVAVAESKRPVL 437          
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Match: A0A6L7XK79_9PROT (Thiamine pyrophosphate-binding protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6L7XK79_9PROT)

HSP 1 Score: 118 bits (295), Expect = 6.930e-28
Identity = 73/165 (44.24%), Postives = 98/165 (59.39%), Query Frame = 1
Query:    1 PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQALNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSANVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQGIAGALGVALAHPQR 495
            PF EE+W+   +P P+   V QI+   AR+A+N+PV  G+ G LP  L A+   L  RA AAF +AA  RN      KA A +     +E+A +R P S    +  + R LP + IVV+E+ITA+SDL        A D++ GRGGGIGQG+AGA+GV L HP R
Sbjct:  274 PFFEEVWYSDGSPFPAGARVVQIEESTARLAFNHPVVAGLVGHLPSTLAAIGQNLRQRANAAFASAAGERNTELRKKKADAASFQKLRVEQAWNREPPSLLRVVEEIRRGLPPNTIVVDESITASSDLGRTIQFETADDYFGGRGGGIGQGLAGAIGVKLGHPDR 438          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127384.5518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9JKI8_9GAMM1.500e-3148.21Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2E9Y843_9PROT2.030e-2945.83Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A521M7H0_9HYPH5.370e-2943.45Thiamine pyrophosphate-binding protein n=1 Tax=Rey... [more]
A0A5C8PF57_9HYPH7.400e-2943.45Thiamine pyrophosphate-binding protein n=1 Tax=Vin... [more]
A0A2E5M4N2_9GAMM1.020e-2844.05Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A5C5S8E8_9HYPH1.930e-2840.48Thiamine pyrophosphate-binding protein n=1 Tax=Rey... [more]
A0A512NR78_9HYPH4.930e-2845.83Benzoylformate decarboxylase n=3 Tax=Alphaproteoba... [more]
UPI00201C8A1F5.090e-2844.05thiamine pyrophosphate-binding protein n=1 Tax=Bra... [more]
A0A521QT04_9HYPH6.790e-2844.64Thiamine pyrophosphate-binding protein n=3 Tax=Alp... [more]
A0A6L7XK79_9PROT6.930e-2844.24Thiamine pyrophosphate-binding protein n=1 Tax=Rho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127384contigM-pyrifera_M_contig127384:1..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.4
Seed ortholog evalue1.6e-24
Seed eggNOG ortholog1297865.APJD01000005_gene3707
Preferred namemdlC
KEGG rclassRC00595
KEGG koko:K01576
KEGG ReactionR01764,R02672
KEGG Pathwayko00627,ko01120,map00627,map01120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thiamine pyrophosphate enzyme, central domain
EggNOG OGs1MX6Q@1224,2TS3K@28211,3JX86@41294,COG0028@1,COG0028@2
EC4.1.1.7
COG Functional cat.EH
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.0010078-CDS-M-pyrifera_M_contig127384:0..5041622815788.0010078-CDS-M-pyrifera_M_contig127384:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127384 1..504 -
1692277569.669173-CDS-M-pyrifera_M_contig127384:0..5041692277569.669173-CDS-M-pyrifera_M_contig127384:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127384 1..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127384.5518.1prot_M-pyrifera_M_contig127384.5518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127384 1..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127384.5518.1

>prot_M-pyrifera_M_contig127384.5518.1 ID=prot_M-pyrifera_M_contig127384.5518.1|Name=mRNA_M-pyrifera_M_contig127384.5518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
PFVEEIWFDPINPIPSTTMVAQIDSVAARIAYNYPVDIGVQGALPQVLQA
LNTALSARAPAAFRAAAVARNETHAATKAAALANLDAAIERAQSRTPMSA
NVALATLARALPDDVIVVNEAITAASDLEHAFAPAGATDFYMGRGGGIGQ
GIAGALGVALAHPQRRVI
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mRNA from alignment at M-pyrifera_M_contig127384:1..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127384.5518.1 ID=mRNA_M-pyrifera_M_contig127384.5518.1|Name=mRNA_M-pyrifera_M_contig127384.5518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127384:1..504- (Macrocystis pyrifera P11B4 male)
CCGTTCGTCGAGGAAATCTGGTTCGATCCAATCAATCCAATCCCGTCGAC GACGATGGTGGCGCAGATCGACAGCGTCGCCGCGCGTATCGCCTACAACT ACCCCGTGGACATCGGCGTACAGGGCGCTCTGCCGCAGGTGTTGCAGGCA CTGAACACAGCCTTGTCCGCGCGCGCGCCGGCGGCGTTCCGCGCTGCGGC CGTGGCGCGCAACGAGACCCATGCCGCGACAAAAGCAGCGGCACTCGCGA ATCTCGACGCCGCCATCGAGCGCGCGCAATCACGCACGCCGATGAGCGCG AACGTCGCGCTGGCGACACTCGCGCGAGCCCTGCCGGACGATGTAATCGT CGTCAATGAAGCGATCACGGCGGCGAGCGATCTCGAGCACGCGTTCGCGC CGGCCGGCGCGACGGATTTTTACATGGGACGCGGCGGCGGCATCGGCCAG GGCATCGCGGGGGCGCTCGGCGTTGCGCTCGCGCATCCGCAGCGCCGCGT CATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127384:1..504-

>mRNA_M-pyrifera_M_contig127384.5518.1 ID=mRNA_M-pyrifera_M_contig127384.5518.1|Name=mRNA_M-pyrifera_M_contig127384.5518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig127384:1..504- (Macrocystis pyrifera P11B4 male)
CCGTTCGTCGAGGAAATCTGGTTCGATCCAATCAATCCAATCCCGTCGAC
GACGATGGTGGCGCAGATCGACAGCGTCGCCGCGCGTATCGCCTACAACT
ACCCCGTGGACATCGGCGTACAGGGCGCTCTGCCGCAGGTGTTGCAGGCA
CTGAACACAGCCTTGTCCGCGCGCGCGCCGGCGGCGTTCCGCGCTGCGGC
CGTGGCGCGCAACGAGACCCATGCCGCGACAAAAGCAGCGGCACTCGCGA
ATCTCGACGCCGCCATCGAGCGCGCGCAATCACGCACGCCGATGAGCGCG
AACGTCGCGCTGGCGACACTCGCGCGAGCCCTGCCGGACGATGTAATCGT
CGTCAATGAAGCGATCACGGCGGCGAGCGATCTCGAGCACGCGTTCGCGC
CGGCCGGCGCGACGGATTTTTACATGGGACGCGGCGGCGGCATCGGCCAG
GGCATCGCGGGGGCGCTCGGCGTTGCGCTCGCGCATCCGCAGCGCCGCGT
CATCCCGTTCGTCGAGGAAATCTGGTTCGATCCAATCAATCCAATCCCGT
CGACGACGATGGTGGCGCAGATCGACAGCGTCGCCGCGCGTATCGCCTAC
AACTACCCCGTGGACATCGGCGTACAGGGCGCTCTGCCGCAGGTGTTGCA
GGCACTGAACACAGCCTTGTCCGCGCGCGCGCCGGCGGCGTTCCGCGCTG
CGGCCGTGGCGCGCAACGAGACCCATGCCGCGACAAAAGCAGCGGCACTC
GCGAATCTCGACGCCGCCATCGAGCGCGCGCAATCACGCACGCCGATGAG
CGCGAACGTCGCGCTGGCGACACTCGCGCGAGCCCTGCCGGACGATGTAA
TCGTCGTCAATGAAGCGATCACGGCGGCGAGCGATCTCGAGCACGCGTTC
GCGCCGGCCGGCGCGACGGATTTTTACATGGGACGCGGCGGCGGCATCGG
CCAGGGCATCGCGGGGGCGCTCGGCGTTGCGCTCGCGCATCCGCAGCGCC
GCGTCATC
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