mRNA_M-pyrifera_M_contig127377.5516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127377.5516.1
Unique NamemRNA_M-pyrifera_M_contig127377.5516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A0A518AFQ8_9PLAN (Uncharacterized protein n=13 Tax=Gimesia TaxID=1649453 RepID=A0A518AFQ8_9PLAN)

HSP 1 Score: 258 bits (660), Expect = 2.960e-85
Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAAQTDQPPNQKPKKLD 375
            LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWE YEQHLHWPVRAALSVGDTFNREGRKE+GMTDEFIEQLYQAAQTDQPPNQKPKKLD
Sbjct:  150 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWEAYEQHLHWPVRAALSVGDTFNREGRKESGMTDEFIEQLYQAAQTDQPPNQKPKKLD 274          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A0A517WNP8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WNP8_9PLAN)

HSP 1 Score: 251 bits (640), Expect = 3.240e-82
Identity = 118/125 (94.40%), Postives = 122/125 (97.60%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAAQTDQPPNQKPKKLD 375
            +LDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVY DEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRK+TGM+DEFIEQLYQ+AQTD PPNQKPK LD
Sbjct:  150 ILDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYHDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKQTGMSDEFIEQLYQSAQTDVPPNQKPKSLD 274          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A6C3Y3_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6C3Y3_9PLAN)

HSP 1 Score: 245 bits (625), Expect = 6.150e-80
Identity = 115/125 (92.00%), Postives = 120/125 (96.00%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAAQTDQPPNQKPKKLD 375
            LLDYLAGLPLTFEGRNLDHT EFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWE YEQHLHWP+RAALSVGDTFNRE R+ETGMTDEFI++LYQAA +DQPPNQKPK LD
Sbjct:  150 LLDYLAGLPLTFEGRNLDHTGEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWEAYEQHLHWPIRAALSVGDTFNREARRETGMTDEFIDRLYQAAHSDQPPNQKPKNLD 274          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A0A5C5X254_9PLAN (Uncharacterized protein n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X254_9PLAN)

HSP 1 Score: 162 bits (411), Expect = 1.100e-47
Identity = 71/110 (64.55%), Postives = 92/110 (83.64%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQA 330
            ++DYLAGLPL FEGRNLDHTLE EQ FL   DQRSA +M+ ++ DEI+HVAFGL+WLR+LKPDHLSDWE +EQHLHWP+R + + G+ F R+ R ++GMT+EFI++L Q+
Sbjct:  150 IVDYLAGLPLVFEGRNLDHTLELEQAFLAVDDQRSATIMRKIHDDEIEHVAFGLNWLRKLKPDHLSDWEAFEQHLHWPLRPSKAKGEEFQRQARLDSGMTEEFIDRLEQS 259          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A0A7C4LQK1_9PLAN (DUF455 family protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LQK1_9PLAN)

HSP 1 Score: 157 bits (397), Expect = 1.470e-45
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAA 333
            LLDYLAGLPLTFEGRNLDHTLEFE+YF  AGDQ+SAA+M+ ++RDEI HVAFG  WL + KP   +DWETY  HLHWP+R   SVGD F+ E R+  G++DEFI++L Q A
Sbjct:  150 LLDYLAGLPLTFEGRNLDHTLEFEEYFSRAGDQKSAAVMRHIHRDEIAHVAFGYEWLLRFKPADRTDWETYCAHLHWPLRPEKSVGDRFHGEPRRAAGLSDEFIQRLAQLA 260          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: UPI001994F6AA (DUF455 family protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI001994F6AA)

HSP 1 Score: 151 bits (382), Expect = 3.300e-45
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQL 321
            +LDYLAGLPLTFEGRNLDHTLEF+ YF  A D +SAA+M+ ++RDEIQHVAFGL WLR+LKP  LSDW+ Y QHLH+P+R   SVGD F+   R   GM+ EF+E+L
Sbjct:    4 VLDYLAGLPLTFEGRNLDHTLEFDGYFTTANDPKSAAMMQAIHRDEIQHVAFGLEWLRKLKPAELSDWDAYVQHLHFPLRPDKSVGDIFHAGPRLAAGMSAEFVERL 110          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: F0SRX8_RUBBR (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=F0SRX8_RUBBR)

HSP 1 Score: 155 bits (392), Expect = 8.770e-45
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAA 333
            ++DYLAGLPL FEG NLDH++EF   F  AGD+RSAALM+V++ DEI+HV FGL WLR+LKP+H SDWET+  HLHWP+R   + GD F  E RK  GMTDEFI  L Q A
Sbjct:  150 VMDYLAGLPLVFEGANLDHSIEFANAFEAAGDKRSAALMRVIHNDEIEHVRFGLEWLRRLKPEHASDWETWNAHLHWPLRPEKAYGDLFQEEARKAAGMTDEFIAMLRQQA 260          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: UPI00029B29B2 (ferritin-like domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=UPI00029B29B2)

HSP 1 Score: 154 bits (388), Expect = 3.420e-44
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQL 321
            +LDYLAGLPLTFEGRNLDHTLEFE+YF  AGD++SA +MK ++ DEI HVAFGL WL++LKP+  SDW+ Y  HLHWP+R   S+GD F+ E R   GM+ EFIE+L
Sbjct:  150 VLDYLAGLPLTFEGRNLDHTLEFEEYFQTAGDEKSANIMKAIHHDEIHHVAFGLEWLQRLKPEGQSDWDAYVAHLHWPLRPDKSIGDRFHLEPRLAAGMSPEFIERL 256          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A0A517R0U1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pan189 TaxID=2527980 RepID=A0A517R0U1_9BACT)

HSP 1 Score: 153 bits (387), Expect = 5.250e-44
Identity = 70/114 (61.40%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAAQTD 342
            +LDYLA LPL FEGRNLDHTLEFEQYFLDAGD++SA +M+ ++RDEI+HV FGL WLR+LKP    DWE + QHLH+P+RA  ++GD F+ E R+  GM +EFI +L  +A  D
Sbjct:  150 VLDYLATLPLVFEGRNLDHTLEFEQYFLDAGDKKSAGIMRAIHRDEIEHVRFGLDWLRKLKPPGSDDWEVFNQHLHYPLRADKAIGDQFHDEPRRAAGMGEEFIARLSGSALPD 263          
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Match: A0A3E0Q4W8_9BACT (DUF455 family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q4W8_9BACT)

HSP 1 Score: 152 bits (384), Expect = 1.700e-43
Identity = 68/120 (56.67%), Postives = 92/120 (76.67%), Query Frame = 1
Query:    4 LDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHVAFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMTDEFIEQLYQAAQTDQPPNQKP 363
            LDY+AGLPL FEGRNLDHT+EF + F  AGD+RS ALM+V++RDEI+HVAFG+ WLR+LKP  LSDW+ +  HLHWP+ A+ + G+   R+ R+E G+++EFIE+L +  +  QPP   P
Sbjct:  151 LDYVAGLPLLFEGRNLDHTIEFAEEFEAAGDERSGALMRVIHRDEIEHVAFGVEWLRKLKPRELSDWDAFTSHLHWPLHASKAAGEVLQRDARREAGLSEEFIERLAETVR--QPPATPP 268          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127377.5516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518AFQ8_9PLAN2.960e-8598.40Uncharacterized protein n=13 Tax=Gimesia TaxID=164... [more]
A0A517WNP8_9PLAN3.240e-8294.40Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A6C3Y3_9PLAN6.150e-8092.00Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A5C5X254_9PLAN1.100e-4764.55Uncharacterized protein n=1 Tax=Thalassoglobus nep... [more]
A0A7C4LQK1_9PLAN1.470e-4565.77DUF455 family protein n=1 Tax=Schlesneria paludico... [more]
UPI001994F6AA3.300e-4565.42DUF455 family protein n=1 Tax=Candidatus Saccharim... [more]
F0SRX8_RUBBR8.770e-4563.06Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
UPI00029B29B23.420e-4464.49ferritin-like domain-containing protein n=1 Tax=Sc... [more]
A0A517R0U1_9BACT5.250e-4461.40Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3E0Q4W8_9BACT1.700e-4356.67DUF455 family protein n=1 Tax=Planctomycetes bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127377contigM-pyrifera_M_contig127377:2..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score248.1
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog344747.PM8797T_10994
KEGG rclassRC00002,RC00428
KEGG koko:K11529
KEGG ReactionR08572
KEGG Pathwayko00030,ko00260,ko00561,ko00630,ko00680,ko01100,ko01120,ko01130,ko01200,map00030,map00260,map00561,map00630,map00680,map01100,map01120,map01130,map01200
KEGG ModuleM00346
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF455)
EggNOG OGs2J217@203682,COG2833@1,COG2833@2
EC2.7.1.165
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.9320614-CDS-M-pyrifera_M_contig127377:1..3791622815787.9320614-CDS-M-pyrifera_M_contig127377:1..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127377 2..379 +
1692277569.6333306-CDS-M-pyrifera_M_contig127377:1..3791692277569.6333306-CDS-M-pyrifera_M_contig127377:1..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127377 2..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127377.5516.1prot_M-pyrifera_M_contig127377.5516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127377 2..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127377.5516.1

>prot_M-pyrifera_M_contig127377.5516.1 ID=prot_M-pyrifera_M_contig127377.5516.1|Name=mRNA_M-pyrifera_M_contig127377.5516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
LLDYLAGLPLTFEGRNLDHTLEFEQYFLDAGDQRSAALMKVVYRDEIQHV
AFGLHWLRQLKPDHLSDWETYEQHLHWPVRAALSVGDTFNREGRKETGMT
DEFIEQLYQAAQTDQPPNQKPKKLD*
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mRNA from alignment at M-pyrifera_M_contig127377:2..379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127377.5516.1 ID=mRNA_M-pyrifera_M_contig127377.5516.1|Name=mRNA_M-pyrifera_M_contig127377.5516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig127377:2..379+ (Macrocystis pyrifera P11B4 male)
CTGTTGGACTATCTCGCCGGTCTGCCACTCACGTTCGAAGGTCGTAACCT GGATCATACCCTGGAATTCGAACAGTATTTTCTCGATGCTGGCGACCAAC GGAGTGCCGCGTTAATGAAGGTCGTCTATCGCGATGAGATTCAGCACGTC GCCTTTGGTCTGCACTGGCTGCGACAGTTAAAACCCGACCACCTTTCGGA CTGGGAGACCTACGAACAACATCTGCACTGGCCAGTTCGAGCTGCTCTGT CGGTCGGGGATACCTTCAACCGTGAGGGACGCAAGGAAACGGGAATGACT GACGAATTCATCGAGCAACTCTACCAGGCCGCTCAGACCGATCAGCCCCC AAATCAGAAGCCCAAGAAGCTGGATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127377:2..379+

>mRNA_M-pyrifera_M_contig127377.5516.1 ID=mRNA_M-pyrifera_M_contig127377.5516.1|Name=mRNA_M-pyrifera_M_contig127377.5516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig127377:2..379+ (Macrocystis pyrifera P11B4 male)
CTGTTGGACTATCTCGCCGGTCTGCCACTCACGTTCGAAGGTCGTAACCT
GGATCATACCCTGGAATTCGAACAGTATTTTCTCGATGCTGGCGACCAAC
GGAGTGCCGCGTTAATGAAGGTCGTCTATCGCGATGAGATTCAGCACGTC
GCCTTTGGTCTGCACTGGCTGCGACAGTTAAAACCCGACCACCTTTCGGA
CTGGGAGACCTACGAACAACATCTGCACTGGCCAGTTCGAGCTGCTCTGT
CGGTCGGGGATACCTTCAACCGTGAGGGACGCAAGGAAACGGGAATGACT
GACGAATTCATCGAGCAACTCTACCAGGCCGCTCAGACCGATCAGCCCCC
AAATCAGAAGCCCAAGAAGCTGGATTAGCTGTTGGACTATCTCGCCGGTC
TGCCACTCACGTTCGAAGGTCGTAACCTGGATCATACCCTGGAATTCGAA
CAGTATTTTCTCGATGCTGGCGACCAACGGAGTGCCGCGTTAATGAAGGT
CGTCTATCGCGATGAGATTCAGCACGTCGCCTTTGGTCTGCACTGGCTGC
GACAGTTAAAACCCGACCACCTTTCGGACTGGGAGACCTACGAACAACAT
CTGCACTGGCCAGTTCGAGCTGCTCTGTCGGTCGGGGATACCTTCAACCG
TGAGGGACGCAAGGAAACGGGAATGACTGACGAATTCATCGAGCAACTCT
ACCAGGCCGCTCAGACCGATCAGCCCCCAAATCAGAAGCCCAAGAAGCTG
GATTAG
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