mRNA_M-pyrifera_M_contig127376.5515.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127376.5515.1
Unique NamemRNA_M-pyrifera_M_contig127376.5515.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127376.5515.1 vs. uniprot
Match: A0A0M0JGE9_9EUKA (Beta-galactosidase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JGE9_9EUKA)

HSP 1 Score: 128 bits (321), Expect = 2.070e-31
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1 
Query:    4 KTSSGVCYAHADVVSFNGYPAWYDHPGDIAYIAEFW--------TGKFNWSAANWPQKPLWISETGGSGIYEWSNNATDGRWTQKYQVEVISEDIRVALSHDRLSAITLWIGFDFIVT----SECPCVWHQPIPPLDTPNNCTFVDVSCGRPKGENSKGVLADMWRRPKNLKPVVTQLY 504
            +   G+CY HA ++++N YP WY   GD++     W        TG+     A    KP  ISETG  GIYEW  N TD +WT KYQ E+++ D+ VA+++  +S IT+W  FDF V     +   C   Q IP +  PN C++++++  RP G N KGV+ D WRRPK    +V   Y
Sbjct:  410 QKDKGMCYEHATLIAYNDYPGWYTCEGDLSCPERSWDKYASSVATGQTKSGPAATIGKPFVISETGAGGIYEWDANTTDAKWTLKYQTEIVTRDVDVAIANSNISGITIWHFFDFKVDDAQENNTAC---QYIPDMFPPN-CSYINIT-SRPGGVNHKGVV-DFWRRPKPAYQLVAAKY 582
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BLAST of mRNA_M-pyrifera_M_contig127376.5515.1 vs. uniprot
Match: X6LGH7_RETFI (Beta-galactosidase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LGH7_RETFI)

HSP 1 Score: 123 bits (309), Expect = 3.480e-30
Identity = 61/169 (36.09%), Postives = 94/169 (55.62%), Query Frame = 1 
Query:    1 DKTSSGVCYAH-ADVVSFNGYPAWYDHPGDIAYIAEFWTGKFNWSAANWPQKPLWISETGGSGIYEWSNNATDGRWTQKYQVEVISEDIRVALSHDRLSAITLWIGFDFIVTSECPCVWHQPIPPLDTPNNCTFVDVSCGRPKGENSKGVLADMWRRPKNLKPVVTQLY 504
            +K    VC ++  D++SFN YP WY+   +++Y+ EFW+    ++   WP KP  ISE+G SGIYE+  N T   W+Q Y  +V+  +I        +S +T+W   D     +   +  +    +   NNC+++D++C RP GEN KG + D WRRPK    V+ QLY
Sbjct:  291 NKLLQDVCLSNIGDIISFNSYPGWYEQLFNLSYVVEFWSNISYFAQLQWPGKPFLISESGASGIYEY-RNTTPVEWSQMYHEQVVEAEITTMFVSPYISGMTMWQFADIKANDQDTALCGR-CDYIPNSNNCSYIDINCKRPGGENHKGGV-DFWRRPKRAYQVLKQLY 456
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BLAST of mRNA_M-pyrifera_M_contig127376.5515.1 vs. uniprot
Match: A0A7S1M275_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1M275_ALECA)

HSP 1 Score: 95.1 bits (235), Expect = 3.020e-22
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:  142 WPQKPLWISETGGSGIYEWSNNATDGRWTQKYQVEVISEDIRVALSHDRLSAITLWIGFDFIV----TSEC-PCVWHQPIPPLDTPNNCTFVDVSCGRP 423
            +P KP  ISETG  GI+EWS+N T   WT KYQ EVIS D+ VAL +DR+S ITLW  FDF +    T+ C PC + +       P  C +V+ SC RP
Sbjct:   21 YPGKPFVISETGAGGIFEWSHNTTAALWTTKYQTEVISRDVDVALGNDRISGITLWHFFDFKIDDKATARCGPCQYAKGA----EPPTCAYVNASCDRP 115
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BLAST of mRNA_M-pyrifera_M_contig127376.5515.1 vs. uniprot
Match: F2UD55_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UD55_SALR5)

HSP 1 Score: 59.3 bits (142), Expect = 3.150e-7
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 DKTSSGVCYAHADVVSFNGYPAWYDHPGDIAYIAEFWTGKFNWSAANWP 147
            D  ++ VC   ADVVSFN YPAWY+HPGDI Y   FW  + +W   ++P
Sbjct:  448 DTRTNDVCLHIADVVSFNDYPAWYNHPGDIKYPKIFWQTQVDWVKKHFP 496
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127376.5515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0M0JGE9_9EUKA2.070e-3139.11Beta-galactosidase n=1 Tax=Chrysochromulina tobini... [more]
X6LGH7_RETFI3.480e-3036.09Beta-galactosidase n=1 Tax=Reticulomyxa filosa Tax... [more]
A0A7S1M275_ALECA3.020e-2249.49Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
F2UD55_SALR53.150e-751.02Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127376contigM-pyrifera_M_contig127376:1..504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue1e-26
Seed eggNOG ortholog44056.XP_009035145.1
KEGG rclassRC00055,RC00171,RC00529,RC00530,RC00714,RC01251
KEGG koko:K01195
KEGG ReactionR01478,R04979,R07818,R08127,R08260,R10830
KEGG Pathwayko00040,ko00531,ko00860,ko00944,ko00983,ko01100,ko01110,ko04142,map00040,map00531,map00860,map00944,map00983,map01100,map01110,map04142
KEGG ModuleM00014,M00076,M00077,M00078,M00129
Hectar predicted targeting categoryother localisation
EggNOG free text desc.beta-glucuronidase activity
EggNOG OGsCOG3250@1,KOG2024@2759
EC3.2.1.31
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.8981094-CDS-M-pyrifera_M_contig127376:0..5041622815787.8981094-CDS-M-pyrifera_M_contig127376:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127376 1..504 +
1692277569.621473-CDS-M-pyrifera_M_contig127376:0..5041692277569.621473-CDS-M-pyrifera_M_contig127376:0..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127376 1..504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127376.5515.1prot_M-pyrifera_M_contig127376.5515.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127376 1..504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127376.5515.1

>prot_M-pyrifera_M_contig127376.5515.1 ID=prot_M-pyrifera_M_contig127376.5515.1|Name=mRNA_M-pyrifera_M_contig127376.5515.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
DKTSSGVCYAHADVVSFNGYPAWYDHPGDIAYIAEFWTGKFNWSAANWPQ
KPLWISETGGSGIYEWSNNATDGRWTQKYQVEVISEDIRVALSHDRLSAI
TLWIGFDFIVTSECPCVWHQPIPPLDTPNNCTFVDVSCGRPKGENSKGVL
ADMWRRPKNLKPVVTQLY
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mRNA from alignment at M-pyrifera_M_contig127376:1..504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127376.5515.1 ID=mRNA_M-pyrifera_M_contig127376.5515.1|Name=mRNA_M-pyrifera_M_contig127376.5515.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig127376:1..504+ (Macrocystis pyrifera P11B4 male)
GACAAAACAAGCAGTGGAGTTTGCTATGCACACGCAGATGTGGTGAGTTT
CAATGGGTACCCAGCATGGTATGATCATCCAGGCGACATTGCATACATTG
CAGAGTTTTGGACTGGAAAATTCAACTGGTCTGCCGCCAACTGGCCACAA
AAGCCACTGTGGATCTCTGAGACTGGTGGAAGTGGGATTTATGAGTGGTC
CAACAACGCCACAGATGGAAGGTGGACACAAAAGTATCAAGTCGAAGTCA
TCTCGGAAGATATTCGCGTCGCTCTGTCTCACGATCGCCTTTCAGCCATT
ACACTTTGGATTGGGTTCGATTTCATCGTCACTAGCGAATGTCCATGCGT
GTGGCATCAACCAATCCCACCTCTTGACACTCCAAACAATTGTACGTTTG
TTGATGTCAGCTGTGGACGCCCAAAGGGCGAAAACAGCAAAGGCGTCCTT
GCAGACATGTGGCGTCGACCAAAGAACCTCAAGCCCGTCGTCACACAATT
GTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127376:1..504+

>mRNA_M-pyrifera_M_contig127376.5515.1 ID=mRNA_M-pyrifera_M_contig127376.5515.1|Name=mRNA_M-pyrifera_M_contig127376.5515.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig127376:1..504+ (Macrocystis pyrifera P11B4 male)
GACAAAACAAGCAGTGGAGTTTGCTATGCACACGCAGATGTGGTGAGTTT
CAATGGGTACCCAGCATGGTATGATCATCCAGGCGACATTGCATACATTG
CAGAGTTTTGGACTGGAAAATTCAACTGGTCTGCCGCCAACTGGCCACAA
AAGCCACTGTGGATCTCTGAGACTGGTGGAAGTGGGATTTATGAGTGGTC
CAACAACGCCACAGATGGAAGGTGGACACAAAAGTATCAAGTCGAAGTCA
TCTCGGAAGATATTCGCGTCGCTCTGTCTCACGATCGCCTTTCAGCCATT
ACACTTTGGATTGGGTTCGATTTCATCGTCACTAGCGAATGTCCATGCGT
GTGGCATCAACCAATCCCACCTCTTGACACTCCAAACAATTGTACGTTTG
TTGATGTCAGCTGTGGACGCCCAAAGGGCGAAAACAGCAAAGGCGTCCTT
GCAGACATGTGGCGTCGACCAAAGAACCTCAAGCCCGTCGTCACACAATT
GTACGACAAAACAAGCAGTGGAGTTTGCTATGCACACGCAGATGTGGTGA
GTTTCAATGGGTACCCAGCATGGTATGATCATCCAGGCGACATTGCATAC
ATTGCAGAGTTTTGGACTGGAAAATTCAACTGGTCTGCCGCCAACTGGCC
ACAAAAGCCACTGTGGATCTCTGAGACTGGTGGAAGTGGGATTTATGAGT
GGTCCAACAACGCCACAGATGGAAGGTGGACACAAAAGTATCAAGTCGAA
GTCATCTCGGAAGATATTCGCGTCGCTCTGTCTCACGATCGCCTTTCAGC
CATTACACTTTGGATTGGGTTCGATTTCATCGTCACTAGCGAATGTCCAT
GCGTGTGGCATCAACCAATCCCACCTCTTGACACTCCAAACAATTGTACG
TTTGTTGATGTCAGCTGTGGACGCCCAAAGGGCGAAAACAGCAAAGGCGT
CCTTGCAGACATGTGGCGTCGACCAAAGAACCTCAAGCCCGTCGTCACAC
AATTGTAC
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