mRNA_M-pyrifera_M_contig127373.5514.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127373.5514.1
Unique NamemRNA_M-pyrifera_M_contig127373.5514.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127373.5514.1 vs. uniprot
Match: A0A2W1AQN8_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AQN8_9CHLR)

HSP 1 Score: 65.5 bits (158), Expect = 5.860e-10
Identity = 40/151 (26.49%), Postives = 73/151 (48.34%), Query Frame = 1 
Query:   22 NGIAVTFSRPTDFTREAEWENWYDDQHLPETVGDASGAWV-ATRFETVDRPPLFSAPIGFTNMTVHEFDDIDRDGPRFLDLVRDFQRRDRMHPLHTIIGLDVFRAVGKWAAKPAPSSSLRGHVFAYTMSNISSAEAEWNKWYDDIHVPDMM 471
            NG+ V  +   D  RE E+  WY + HLP+ V  ++G +  A RFE V+  P  +  + F      + +D+         L+   +   R   L  ++G  + R +G   +  A    + G +   T  + ++ E E+N+WY++IH+PD++
Sbjct:    7 NGVLVALTNCKDPAREGEFNKWYSETHLPDIV--STGLFKDAARFENVESKPGEAKYLAFYET---DAEDLAEARTSLTTLIGGLREAGRSSDLTEMVGGGIHRRIGS-GSSAAKGKPVTGLLLVSTDCSDATKEDEFNRWYNEIHIPDIL 151
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BLAST of mRNA_M-pyrifera_M_contig127373.5514.1 vs. uniprot
Match: A0A5C6UCX5_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas ginsenosidivorax TaxID=862135 RepID=A0A5C6UCX5_9SPHN)

HSP 1 Score: 56.6 bits (135), Expect = 1.510e-6
Identity = 37/139 (26.62%), Postives = 65/139 (46.76%), Query Frame = 1 
Query:   64 REAEWENWYDDQHLPETVGDASGAWVATRFETVDRPPLFSAPIGFTNMTVHEFDDID--RDGPRFLDLVRDFQRRDRMHPLHTIIGLDVFRAVGKWAAKP--APSSSLRGHVFAYTMSNISSAEAEWNKWYDDIHVPDM 468
            REA++ +W+D +H    +G   G   A R+E   +  +   P  +  M+V+EFD  D  R+ P    L+ D ++   +        +  +     W + P   P   L  HV     + ++  EAE++KWYD +H P++
Sbjct:   16 READYASWFDGEHRA-ALGGLPGFVSADRYEVTPQQIMPDIPQPWRFMSVYEFDYADPARELPALSPLLADARKTGLIDDADESERIHSYAMYSDWVSSPNHRPDQPL-SHVSIILANFVAGREAEYHKWYDKVHGPEV 152
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BLAST of mRNA_M-pyrifera_M_contig127373.5514.1 vs. uniprot
Match: A0A418WDS6_9PROT (Uncharacterized protein n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WDS6_9PROT)

HSP 1 Score: 51.2 bits (121), Expect = 9.980e-5
Identity = 44/160 (27.50%), Postives = 68/160 (42.50%), Query Frame = 1 
Query:   19 TNGIAVTFSRPTDFTREAEWENWYDDQHLPETVGDASGAWVATRFETVDRPPLFSAPIG---FTNMTVHEFDDIDRDGPRFLDLVRDFQRRDRMHPLHTIIGLDVFRAVGKWAAKPAPSSSLRGHVFAYTMSNISSA-EAEWNKWYDDIHVPDMMESEAF 486
            T  + +  S P +  REAE+ +WY +QH+P+ +    G   A RF   +    F  P G   +  M  +E D  D  G    DLV      D    +  ++  +   A+      P    + R       +SN S   E ++N WYD+ HVPD++    F
Sbjct:    2 TRHVQIVLSNPVETAREAEFNDWYTNQHIPDLM-TLPGFVRAQRFRLANS---FRDPRGGPTWRYMVYYELDTPDL-GQMLTDLVD--AHSDGRITVSDVLHNETLTALVYSPVAPFHGEAGRRRQIFVALSNPSEGREDDFNIWYDNQHVPDVVSIPGF 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127373.5514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2W1AQN8_9CHLR5.860e-1026.49Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A5C6UCX5_9SPHN1.510e-626.62Uncharacterized protein n=1 Tax=Sphingomonas ginse... [more]
A0A418WDS6_9PROT9.980e-527.50Uncharacterized protein n=1 Tax=Oleomonas cavernae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127373contigM-pyrifera_M_contig127373:12..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.8408775-UTR-M-pyrifera_M_contig127373:11..201622815787.8408775-UTR-M-pyrifera_M_contig127373:11..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127373 12..20 +
1692277569.6044605-UTR-M-pyrifera_M_contig127373:11..201692277569.6044605-UTR-M-pyrifera_M_contig127373:11..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127373 12..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.8561835-CDS-M-pyrifera_M_contig127373:20..4971622815787.8561835-CDS-M-pyrifera_M_contig127373:20..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127373 21..497 +
1692277569.6132925-CDS-M-pyrifera_M_contig127373:20..4971692277569.6132925-CDS-M-pyrifera_M_contig127373:20..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127373 21..497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127373.5514.1prot_M-pyrifera_M_contig127373.5514.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127373 21..497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127373.5514.1

>prot_M-pyrifera_M_contig127373.5514.1 ID=prot_M-pyrifera_M_contig127373.5514.1|Name=mRNA_M-pyrifera_M_contig127373.5514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MPTTNGIAVTFSRPTDFTREAEWENWYDDQHLPETVGDASGAWVATRFET
VDRPPLFSAPIGFTNMTVHEFDDIDRDGPRFLDLVRDFQRRDRMHPLHTI
IGLDVFRAVGKWAAKPAPSSSLRGHVFAYTMSNISSAEAEWNKWYDDIHV
PDMMESEAF
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mRNA from alignment at M-pyrifera_M_contig127373:12..497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127373.5514.1 ID=mRNA_M-pyrifera_M_contig127373.5514.1|Name=mRNA_M-pyrifera_M_contig127373.5514.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig127373:12..497+ (Macrocystis pyrifera P11B4 male)
GTCCGCGGCATGCCCACGACGAACGGCATCGCCGTCACCTTCTCCCGTCC
CACCGACTTCACCCGGGAGGCCGAATGGGAGAATTGGTATGACGACCAGC
ATCTTCCCGAGACCGTGGGCGATGCGTCGGGGGCCTGGGTCGCGACTCGT
TTCGAGACGGTCGATCGACCCCCGTTGTTCTCCGCGCCGATCGGGTTCAC
GAACATGACCGTGCACGAGTTCGACGACATCGACCGTGATGGACCACGGT
TCCTCGACCTGGTGCGCGACTTTCAGCGGCGCGACCGCATGCATCCGCTG
CACACGATCATCGGCCTGGATGTCTTTCGGGCGGTTGGAAAGTGGGCAGC
CAAGCCGGCGCCCTCGTCATCGCTCCGGGGTCATGTGTTCGCCTACACCA
TGTCCAACATCTCGTCCGCCGAGGCGGAGTGGAACAAGTGGTACGACGAC
ATCCACGTCCCCGACATGATGGAGTCCGAGGCCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127373:12..497+

>mRNA_M-pyrifera_M_contig127373.5514.1 ID=mRNA_M-pyrifera_M_contig127373.5514.1|Name=mRNA_M-pyrifera_M_contig127373.5514.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig127373:12..497+ (Macrocystis pyrifera P11B4 male)
ATGCCCACGACGAACGGCATCGCCGTCACCTTCTCCCGTCCCACCGACTT
CACCCGGGAGGCCGAATGGGAGAATTGGTATGACGACCAGCATCTTCCCG
AGACCGTGGGCGATGCGTCGGGGGCCTGGGTCGCGACTCGTTTCGAGACG
GTCGATCGACCCCCGTTGTTCTCCGCGCCGATCGGGTTCACGAACATGAC
CGTGCACGAGTTCGACGACATCGACCGTGATGGACCACGGTTCCTCGACC
TGGTGCGCGACTTTCAGCGGCGCGACCGCATGCATCCGCTGCACACGATC
ATCGGCCTGGATGTCTTTCGGGCGGTTGGAAAGTGGGCAGCCAAGCCGGC
GCCCTCGTCATCGCTCCGGGGTCATGTGTTCGCCTACACCATGTCCAACA
TCTCGTCCGCCGAGGCGGAGTGGAACAAGTGGTACGACGACATCCACGTC
CCCGACATGATGGAGTCCGAGGCCTTTATGCCCACGACGAACGGCATCGC
CGTCACCTTCTCCCGTCCCACCGACTTCACCCGGGAGGCCGAATGGGAGA
ATTGGTATGACGACCAGCATCTTCCCGAGACCGTGGGCGATGCGTCGGGG
GCCTGGGTCGCGACTCGTTTCGAGACGGTCGATCGACCCCCGTTGTTCTC
CGCGCCGATCGGGTTCACGAACATGACCGTGCACGAGTTCGACGACATCG
ACCGTGATGGACCACGGTTCCTCGACCTGGTGCGCGACTTTCAGCGGCGC
GACCGCATGCATCCGCTGCACACGATCATCGGCCTGGATGTCTTTCGGGC
GGTTGGAAAGTGGGCAGCCAAGCCGGCGCCCTCGTCATCGCTCCGGGGTC
ATGTGTTCGCCTACACCATGTCCAACATCTCGTCCGCCGAGGCGGAGTGG
AACAAGTGGTACGACGACATCCACGTCCCCGACATGATGGAGTCCGAGGC
CTTT
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