mRNA_M-pyrifera_M_contig12736.5512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12736.5512.1
Unique NamemRNA_M-pyrifera_M_contig12736.5512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12736.5512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12736contigM-pyrifera_M_contig12736:3699..4100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12736.5512.1prot_M-pyrifera_M_contig12736.5512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12736 3719..4078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.726057-UTR-M-pyrifera_M_contig12736:3698..37181622815787.726057-UTR-M-pyrifera_M_contig12736:3698..3718Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12736 3699..3718 +
1692277569.5540445-UTR-M-pyrifera_M_contig12736:3698..37181692277569.5540445-UTR-M-pyrifera_M_contig12736:3698..3718Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12736 3699..3718 +
1622815787.7555768-UTR-M-pyrifera_M_contig12736:4078..41001622815787.7555768-UTR-M-pyrifera_M_contig12736:4078..4100Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12736 4079..4100 +
1692277569.573281-UTR-M-pyrifera_M_contig12736:4078..41001692277569.573281-UTR-M-pyrifera_M_contig12736:4078..4100Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12736 4079..4100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.740971-CDS-M-pyrifera_M_contig12736:3718..40781622815787.740971-CDS-M-pyrifera_M_contig12736:3718..4078Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12736 3719..4078 +
1692277569.5640996-CDS-M-pyrifera_M_contig12736:3718..40781692277569.5640996-CDS-M-pyrifera_M_contig12736:3718..4078Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12736 3719..4078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12736.5512.1

>prot_M-pyrifera_M_contig12736.5512.1 ID=prot_M-pyrifera_M_contig12736.5512.1|Name=mRNA_M-pyrifera_M_contig12736.5512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MRDIFVGRRKKTHLSVCLSAIVRHHYRPPSYHQINHRSIITPLATHSEKP
AEGAGDDNKASRGRTYIIHTPVPGNRCHTYVYLVYRTRYIAEVSHSRARS
THYRACPHAVKNQRTEPRH*
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mRNA from alignment at M-pyrifera_M_contig12736:3699..4100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12736.5512.1 ID=mRNA_M-pyrifera_M_contig12736.5512.1|Name=mRNA_M-pyrifera_M_contig12736.5512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig12736:3699..4100+ (Macrocystis pyrifera P11B4 male)
CTTTATTAGAACGTGCTTTCATGCGTGATATTTTCGTAGGCAGGCGAAAA
AAGACTCATCTGTCTGTCTGTCTGTCGGCCATCGTTCGTCATCATTATCG
CCCTCCGTCATATCATCAAATCAACCATCGGTCAATCATCACCCCCCTCG
CCACTCACTCAGAAAAGCCGGCAGAAGGAGCAGGCGACGACAACAAAGCC
AGCCGCGGCCGTACGTACATAATACATACTCCAGTACCCGGTAACAGGTG
TCACACGTACGTATACCTGGTATACCGCACCAGGTATATCGCAGAGGTGT
CACACAGCAGAGCACGCAGCACACATTACCGTGCATGCCCACATGCCGTA
AAAAATCAAAGAACAGAGCCACGTCACTGACAAGCGGCACAATCTTGGAA
AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12736:3699..4100+

>mRNA_M-pyrifera_M_contig12736.5512.1 ID=mRNA_M-pyrifera_M_contig12736.5512.1|Name=mRNA_M-pyrifera_M_contig12736.5512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig12736:3699..4100+ (Macrocystis pyrifera P11B4 male)
ATGCGTGATATTTTCGTAGGCAGGCGAAAAAAGACTCATCTGTCTGTCTG
TCTGTCGGCCATCGTTCGTCATCATTATCGCCCTCCGTCATATCATCAAA
TCAACCATCGGTCAATCATCACCCCCCTCGCCACTCACTCAGAAAAGCCG
GCAGAAGGAGCAGGCGACGACAACAAAGCCAGCCGCGGCCGTACGTACAT
AATACATACTCCAGTACCCGGTAACAGGTGTCACACGTACGTATACCTGG
TATACCGCACCAGGTATATCGCAGAGGTGTCACACAGCAGAGCACGCAGC
ACACATTACCGTGCATGCCCACATGCCGTAAAAAATCAAAGAACAGAGCC
ACGTCACTGAATGCGTGATATTTTCGTAGGCAGGCGAAAAAAGACTCATC
TGTCTGTCTGTCTGTCGGCCATCGTTCGTCATCATTATCGCCCTCCGTCA
TATCATCAAATCAACCATCGGTCAATCATCACCCCCCTCGCCACTCACTC
AGAAAAGCCGGCAGAAGGAGCAGGCGACGACAACAAAGCCAGCCGCGGCC
GTACGTACATAATACATACTCCAGTACCCGGTAACAGGTGTCACACGTAC
GTATACCTGGTATACCGCACCAGGTATATCGCAGAGGTGTCACACAGCAG
AGCACGCAGCACACATTACCGTGCATGCCCACATGCCGTAAAAAATCAAA
GAACAGAGCCACGTCACTGA
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