mRNA_M-pyrifera_M_contig127304.5498.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A6B1H9Q5_9ACTN (Amino acid ABC transporter permease n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1H9Q5_9ACTN) HSP 1 Score: 81.6 bits (200), Expect = 1.240e-15 Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 1
Query: 13 RFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGVA 351
RF+F T AV+ NLTL M+G YPR ++ WR+ AQ + A GL G +A S +E G+ + +PLDL++R+WS+LL +AV L F TI P L L + A G+A
Sbjct: 61 RFIFVTGQWEAVRKNLTLLMMGVYPR----DEQWRLVAQMYIVASALGLAWGTVTARSQDRSEETGVVAQRPSPLDLLRRYWSILLLLAVILVFTRTIWPTLFTLSTIAIGLA 169
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A6L7JJG7_9ACTN (Amino acid ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JJG7_9ACTN) HSP 1 Score: 78.2 bits (191), Expect = 2.050e-14 Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 1 FLSFRFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAG 345
F S R++F T AV+ NLTL MVG +PR N+ WR+ Q + A GL G ++A S A G+ TPLDL++R+W++LL + V L+ TI P L L + A G
Sbjct: 54 FYSGRYIFVTGQWEAVRKNLTLLMVGIFPR----NEQWRLVVQMYLMASALGLAWGTATARSQDRAAETGIAAHRPTPLDLMRRYWTILLLLVVILALTQTIWPTLFTLSTLAVG 164
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A7K2EDG4_9ACTN (Amino acid ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2EDG4_9ACTN) HSP 1 Score: 62.8 bits (151), Expect = 5.110e-9 Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 13 RFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGV 348
RF+F T V+TNLTL M+GT+PR + WR+ Q L A GL G +A+S A AG+ + D V+R+W V + +AV L T P+ + + A GV
Sbjct: 58 RFLFVTGQWEPVRTNLTLLMMGTFPR----EEQWRIVVQVYLLCAAVGLLWGGLTASSRDRARDAGVPFSRARLRDGVRRWWPVFVLLAVLLGMTRTWLPLAFVASALALGV 165
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A6G2K6C2_9ACTN (Amino acid ABC transporter permease n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K6C2_9ACTN) HSP 1 Score: 59.3 bits (142), Expect = 8.350e-8 Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 1
Query: 13 RFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGV 348
RF+F T V+TNLTL M+GT+PR + WRV Q L A GL G +A+S A A + + D V+R+W + + +AV L T P+ + + A GV
Sbjct: 58 RFLFVTGQWAPVRTNLTLLMMGTFPRA----EQWRVVVQVYLLCAAAGLVWGGLTASSRDRAADADVPFSRARLRDGVRRWWPLFVLLAVLLGMTRTWLPLAFVASALAGGV 165
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A2E3TTV5_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTV5_9ACTN) HSP 1 Score: 55.5 bits (132), Expect = 1.860e-6 Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 46 VKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAA--GLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGVAGFLIG 366
V+ NL FM+G +P+ ++LWR A L L G+ VG++ A + +A GL+ E T + L++RFW +L FI + L+F TI P L +L VAG +IG
Sbjct: 64 VRANLRNFMIGQFPK----DELWRPWAG--GLALVAGVGVGSAGMARNAFDDATDKGLSTERPTWIGLLRRFWPILAFIGLVLTFTRTIQPTLGVLAGLGLFVAGRVIG 166
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A7Y1ZSU9_9ACTN (Amino acid ABC transporter permease n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZSU9_9ACTN) HSP 1 Score: 55.1 bits (131), Expect = 2.550e-6 Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 46 VKTNLTLFMVGTYPRVGDNNQLWRV--AAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGVA 351
++ NL FMVG +PR ++LWR+ +A + +G+ GG VGA + + A GL + S+ LDL++RFW VL F+A+ SF T P + +L + A VA
Sbjct: 80 IQVNLRNFMVGQFPR----DELWRLWWSAYVLIVGIGGG--VGALAHNAEDDAREKGLEYKRSSWLDLLRRFWPVLAFVALMTSFARTWLPYVGVLVALALVVA 177
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A350XR22_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A350XR22_9ACTN) HSP 1 Score: 51.2 bits (121), Expect = 5.660e-5 Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1
Query: 16 FVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFV----TLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAG 345
F+F V+ NLTLFMVG YPR +LWR+ AQ V T+GLA G+ + + AS R+++ G+ L V+R+W +L + + L + P+++ L + G
Sbjct: 76 FLFVNGRWSPVRRNLTLFMVGRYPR----EELWRIVAQVVIWSGTIGLAWGVAI---AGASFRASQT-GVAYREDPLLTKVRRYWGLLGLLLLLLLLTESFGPLILALVAIGVG 181 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127304.5498.1 >prot_M-pyrifera_M_contig127304.5498.1 ID=prot_M-pyrifera_M_contig127304.5498.1|Name=mRNA_M-pyrifera_M_contig127304.5498.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp FLSFRFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAback to top mRNA from alignment at M-pyrifera_M_contig127304:2..367+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127304.5498.1 ID=mRNA_M-pyrifera_M_contig127304.5498.1|Name=mRNA_M-pyrifera_M_contig127304.5498.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig127304:2..367+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127304:2..367+ >mRNA_M-pyrifera_M_contig127304.5498.1 ID=mRNA_M-pyrifera_M_contig127304.5498.1|Name=mRNA_M-pyrifera_M_contig127304.5498.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig127304:2..367+ (Macrocystis pyrifera P11B4 male)back to top |