mRNA_M-pyrifera_M_contig127304.5498.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127304.5498.1
Unique NamemRNA_M-pyrifera_M_contig127304.5498.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A6B1H9Q5_9ACTN (Amino acid ABC transporter permease n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1H9Q5_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-15
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   13 RFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGVA 351
            RF+F T    AV+ NLTL M+G YPR    ++ WR+ AQ   +  A GL  G  +A S   +E  G+  +  +PLDL++R+WS+LL +AV L F  TI P L  L + A G+A
Sbjct:   61 RFIFVTGQWEAVRKNLTLLMMGVYPR----DEQWRLVAQMYIVASALGLAWGTVTARSQDRSEETGVVAQRPSPLDLLRRYWSILLLLAVILVFTRTIWPTLFTLSTIAIGLA 169          
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A6L7JJG7_9ACTN (Amino acid ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L7JJG7_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 2.050e-14
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 FLSFRFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAG 345
            F S R++F T    AV+ NLTL MVG +PR    N+ WR+  Q   +  A GL  G ++A S   A   G+     TPLDL++R+W++LL + V L+   TI P L  L + A G
Sbjct:   54 FYSGRYIFVTGQWEAVRKNLTLLMVGIFPR----NEQWRLVVQMYLMASALGLAWGTATARSQDRAAETGIAAHRPTPLDLMRRYWTILLLLVVILALTQTIWPTLFTLSTLAVG 164          
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A7K2EDG4_9ACTN (Amino acid ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2EDG4_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 5.110e-9
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   13 RFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGV 348
            RF+F T     V+TNLTL M+GT+PR     + WR+  Q   L  A GL  G  +A+S   A  AG+    +   D V+R+W V + +AV L    T  P+  +  + A GV
Sbjct:   58 RFLFVTGQWEPVRTNLTLLMMGTFPR----EEQWRIVVQVYLLCAAVGLLWGGLTASSRDRARDAGVPFSRARLRDGVRRWWPVFVLLAVLLGMTRTWLPLAFVASALALGV 165          
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A6G2K6C2_9ACTN (Amino acid ABC transporter permease n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K6C2_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 8.350e-8
Identity = 40/112 (35.71%), Postives = 57/112 (50.89%), Query Frame = 1
Query:   13 RFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGV 348
            RF+F T     V+TNLTL M+GT+PR     + WRV  Q   L  A GL  G  +A+S   A  A +    +   D V+R+W + + +AV L    T  P+  +  + A GV
Sbjct:   58 RFLFVTGQWAPVRTNLTLLMMGTFPRA----EQWRVVVQVYLLCAAAGLVWGGLTASSRDRAADADVPFSRARLRDGVRRWWPLFVLLAVLLGMTRTWLPLAFVASALAGGV 165          
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A2E3TTV5_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTV5_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 1.860e-6
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   46 VKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLAGGLFVGASSAASHRSAEAA--GLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGVAGFLIG 366
            V+ NL  FM+G +P+    ++LWR  A    L L  G+ VG++  A +   +A   GL+ E  T + L++RFW +L FI + L+F  TI P L +L      VAG +IG
Sbjct:   64 VRANLRNFMIGQFPK----DELWRPWAG--GLALVAGVGVGSAGMARNAFDDATDKGLSTERPTWIGLLRRFWPILAFIGLVLTFTRTIQPTLGVLAGLGLFVAGRVIG 166          
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A7Y1ZSU9_9ACTN (Amino acid ABC transporter permease n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZSU9_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 2.550e-6
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   46 VKTNLTLFMVGTYPRVGDNNQLWRV--AAQFVTLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAGVA 351
            ++ NL  FMVG +PR    ++LWR+  +A  + +G+ GG  VGA +  +   A   GL  + S+ LDL++RFW VL F+A+  SF  T  P + +L + A  VA
Sbjct:   80 IQVNLRNFMVGQFPR----DELWRLWWSAYVLIVGIGGG--VGALAHNAEDDAREKGLEYKRSSWLDLLRRFWPVLAFVALMTSFARTWLPYVGVLVALALVVA 177          
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Match: A0A350XR22_9ACTN (ABC transmembrane type-1 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A350XR22_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 5.660e-5
Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   16 FVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFV----TLGLAGGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVTTITPVLIILGSFAAG 345
            F+F       V+ NLTLFMVG YPR     +LWR+ AQ V    T+GLA G+ +   + AS R+++  G+       L  V+R+W +L  + + L    +  P+++ L +   G
Sbjct:   76 FLFVNGRWSPVRRNLTLFMVGRYPR----EELWRIVAQVVIWSGTIGLAWGVAI---AGASFRASQT-GVAYREDPLLTKVRRYWGLLGLLLLLLLLTESFGPLILALVAIGVG 181          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127304.5498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6B1H9Q5_9ACTN1.240e-1542.48Amino acid ABC transporter permease n=4 Tax=Acidim... [more]
A0A6L7JJG7_9ACTN2.050e-1440.00Amino acid ABC transporter permease n=1 Tax=Acidim... [more]
A0A7K2EDG4_9ACTN5.110e-936.61Amino acid ABC transporter permease n=1 Tax=Acidim... [more]
A0A6G2K6C2_9ACTN8.350e-835.71Amino acid ABC transporter permease n=4 Tax=Acidim... [more]
A0A2E3TTV5_9ACTN1.860e-637.61ABC transmembrane type-1 domain-containing protein... [more]
A0A7Y1ZSU9_9ACTN2.550e-638.46Amino acid ABC transporter permease n=1 Tax=Ilumat... [more]
A0A350XR22_9ACTN5.660e-533.33ABC transmembrane type-1 domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127304contigM-pyrifera_M_contig127304:2..367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.2061892-CDS-M-pyrifera_M_contig127304:1..3671622815787.2061892-CDS-M-pyrifera_M_contig127304:1..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127304 2..367 +
1692277569.3450956-CDS-M-pyrifera_M_contig127304:1..3671692277569.3450956-CDS-M-pyrifera_M_contig127304:1..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127304 2..367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127304.5498.1prot_M-pyrifera_M_contig127304.5498.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127304 2..367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127304.5498.1

>prot_M-pyrifera_M_contig127304.5498.1 ID=prot_M-pyrifera_M_contig127304.5498.1|Name=mRNA_M-pyrifera_M_contig127304.5498.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
FLSFRFVFTTAPSHAVKTNLTLFMVGTYPRVGDNNQLWRVAAQFVTLGLA
GGLFVGASSAASHRSAEAAGLTIEPSTPLDLVKRFWSVLLFIAVCLSFVT
TITPVLIILGSFAAGVAGFLIG
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mRNA from alignment at M-pyrifera_M_contig127304:2..367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127304.5498.1 ID=mRNA_M-pyrifera_M_contig127304.5498.1|Name=mRNA_M-pyrifera_M_contig127304.5498.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig127304:2..367+ (Macrocystis pyrifera P11B4 male)
TTCCTCTCCTTCCGGTTCGTGTTCACCACCGCCCCGTCGCATGCGGTCAA GACCAACCTGACCCTGTTCATGGTCGGCACGTACCCCCGGGTCGGTGACA ACAACCAACTGTGGCGTGTTGCCGCCCAGTTCGTCACACTCGGGCTGGCC GGAGGTCTGTTCGTCGGAGCATCGAGCGCAGCGAGTCATCGCAGCGCCGA GGCCGCCGGGCTCACCATCGAGCCGTCGACGCCGCTCGACCTCGTCAAGC GCTTCTGGTCGGTCTTGCTCTTCATTGCCGTCTGCCTGAGTTTCGTCACC ACCATCACCCCGGTGTTGATCATTCTCGGATCGTTCGCCGCAGGTGTGGC CGGGTTCCTCATCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127304:2..367+

>mRNA_M-pyrifera_M_contig127304.5498.1 ID=mRNA_M-pyrifera_M_contig127304.5498.1|Name=mRNA_M-pyrifera_M_contig127304.5498.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig127304:2..367+ (Macrocystis pyrifera P11B4 male)
TTCCTCTCCTTCCGGTTCGTGTTCACCACCGCCCCGTCGCATGCGGTCAA
GACCAACCTGACCCTGTTCATGGTCGGCACGTACCCCCGGGTCGGTGACA
ACAACCAACTGTGGCGTGTTGCCGCCCAGTTCGTCACACTCGGGCTGGCC
GGAGGTCTGTTCGTCGGAGCATCGAGCGCAGCGAGTCATCGCAGCGCCGA
GGCCGCCGGGCTCACCATCGAGCCGTCGACGCCGCTCGACCTCGTCAAGC
GCTTCTGGTCGGTCTTGCTCTTCATTGCCGTCTGCCTGAGTTTCGTCACC
ACCATCACCCCGGTGTTGATCATTCTCGGATCGTTCGCCGCAGGTGTGGC
CGGGTTCCTCATCGGCTTCCTCTCCTTCCGGTTCGTGTTCACCACCGCCC
CGTCGCATGCGGTCAAGACCAACCTGACCCTGTTCATGGTCGGCACGTAC
CCCCGGGTCGGTGACAACAACCAACTGTGGCGTGTTGCCGCCCAGTTCGT
CACACTCGGGCTGGCCGGAGGTCTGTTCGTCGGAGCATCGAGCGCAGCGA
GTCATCGCAGCGCCGAGGCCGCCGGGCTCACCATCGAGCCGTCGACGCCG
CTCGACCTCGTCAAGCGCTTCTGGTCGGTCTTGCTCTTCATTGCCGTCTG
CCTGAGTTTCGTCACCACCATCACCCCGGTGTTGATCATTCTCGGATCGT
TCGCCGCAGGTGTGGCCGGGTTCCTCATCGGC
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