mRNA_M-pyrifera_M_contig127268.5489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127268.5489.1
Unique NamemRNA_M-pyrifera_M_contig127268.5489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Match: A0A7S4I4B4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I4B4_9EUKA)

HSP 1 Score: 75.5 bits (184), Expect = 5.670e-16
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 LPLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPNLPFFHLARERL 135
            LP WW P  HD  L+ G VKHGFG+WEKICSDP LPF  +A ER+
Sbjct:   83 LPSWWIPSEHDTALIHGVVKHGFGQWEKICSDPELPFLAIAEERM 127
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BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Match: L8GK61_ACACA (SNF2 family Nterminal domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GK61_ACACA)

HSP 1 Score: 69.7 bits (169), Expect = 1.960e-12
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 LPLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPNLPFFHLA---RERL 135
            LP WW+   HD+ L+KG  KHG+G+WE++CSDP+LPFF +A   RER+
Sbjct: 1465 LPKWWQVTTHDIALLKGIDKHGYGRWEEVCSDPDLPFFAIAQSMRERV 1512
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BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Match: D8TS21_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TS21_VOLCA)

HSP 1 Score: 57.0 bits (136), Expect = 5.940e-8
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 LPLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPNLPFFHLARERLAL 141
            LP+WW+PE HD+ L +G V+HGFG W+ I +DP   F   AR   AL
Sbjct:  882 LPVWWQPE-HDLQLAQGVVRHGFGAWDTIATDPEYCFASCARAAQAL 927
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BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Match: UPI000644B892 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B892)

HSP 1 Score: 55.1 bits (131), Expect = 2.840e-7
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    4 PLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPNLPFFHLARERL 135
            P W++  VHD+ LV+G  KHG+G++E+IC D +LPF+ + +  L
Sbjct: 1476 PSWYQKNVHDLALVEGVSKHGYGQFEEICRDESLPFYSIYKTLL 1519
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BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Match: D3BJ98_POLPP (Myb domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BJ98_POLPP)

HSP 1 Score: 53.5 bits (127), Expect = 9.960e-7
Identity = 17/39 (43.59%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 PLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPNLPFFHL 120
            P+W++  VHD+ L++G  KHG+G++E IC D + PF+ +
Sbjct: 1472 PMWYQKGVHDIALLQGIAKHGYGQFEDICKDKSFPFYDI 1510
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BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Match: A0A6B2L1L2_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L1L2_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-6
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 LPLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPN 102
            LP WW P  HD+GLV+G  K GFGKWE++ ++P+
Sbjct:   88 LPDWWEPYKHDMGLVRGIDKFGFGKWEEVFTEPS 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127268.5489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4I4B4_9EUKA5.670e-1664.44Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8GK61_ACACA1.960e-1256.25SNF2 family Nterminal domain containing protein n=... [more]
D8TS21_VOLCA5.940e-851.06Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
UPI000644B8922.840e-745.45hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BJ98_POLPP9.960e-743.59Myb domain-containing protein n=1 Tax=Polysphondyl... [more]
A0A6B2L1L2_9EUKA1.820e-655.88Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127268contigM-pyrifera_M_contig127268:247..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.5170836-CDS-M-pyrifera_M_contig127268:246..4291622815786.5170836-CDS-M-pyrifera_M_contig127268:246..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127268 247..429 -
1692277568.9243402-CDS-M-pyrifera_M_contig127268:246..4291692277568.9243402-CDS-M-pyrifera_M_contig127268:246..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127268 247..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127268.5489.1prot_M-pyrifera_M_contig127268.5489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127268 247..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127268.5489.1

>prot_M-pyrifera_M_contig127268.5489.1 ID=prot_M-pyrifera_M_contig127268.5489.1|Name=mRNA_M-pyrifera_M_contig127268.5489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=61bp
LPLWWRPEVHDVGLVKGTVKHGFGKWEKICSDPNLPFFHLARERLALADS
AESVEEESQSN
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mRNA from alignment at M-pyrifera_M_contig127268:247..429-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127268.5489.1 ID=mRNA_M-pyrifera_M_contig127268.5489.1|Name=mRNA_M-pyrifera_M_contig127268.5489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=183bp|location=Sequence derived from alignment at M-pyrifera_M_contig127268:247..429- (Macrocystis pyrifera P11B4 male)
CTCCCGCTGTGGTGGCGGCCTGAGGTGCACGACGTGGGCCTCGTCAAGGG
CACCGTCAAGCACGGCTTTGGCAAGTGGGAGAAGATCTGCAGCGACCCCA
ACCTCCCCTTCTTCCACCTGGCTCGCGAGCGCCTGGCGCTGGCAGACAGC
GCAGAGAGCGTCGAGGAAGAGTCACAGAGCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127268:247..429-

>mRNA_M-pyrifera_M_contig127268.5489.1 ID=mRNA_M-pyrifera_M_contig127268.5489.1|Name=mRNA_M-pyrifera_M_contig127268.5489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig127268:247..429- (Macrocystis pyrifera P11B4 male)
CTCCCGCTGTGGTGGCGGCCTGAGGTGCACGACGTGGGCCTCGTCAAGGG
CACCGTCAAGCACGGCTTTGGCAAGTGGGAGAAGATCTGCAGCGACCCCA
ACCTCCCCTTCTTCCACCTGGCTCGCGAGCGCCTGGCGCTGGCAGACAGC
GCAGAGAGCGTCGAGGAAGAGTCACAGAGCAACCTCCCGCTGTGGTGGCG
GCCTGAGGTGCACGACGTGGGCCTCGTCAAGGGCACCGTCAAGCACGGCT
TTGGCAAGTGGGAGAAGATCTGCAGCGACCCCAACCTCCCCTTCTTCCAC
CTGGCTCGCGAGCGCCTGGCGCTGGCAGACAGCGCAGAGAGCGTCGAGGA
AGAGTCACAGAGCAAC
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