mRNA_M-pyrifera_M_contig127253.5486.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127253.5486.1
Unique NamemRNA_M-pyrifera_M_contig127253.5486.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Match: B3S694_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S694_TRIAD)

HSP 1 Score: 62.8 bits (151), Expect = 8.380e-9
Identity = 35/92 (38.04%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  124 EEITGQSKRTMETLLANHREMDSANRRVRDTLEQITSLQKTLATEFFDVHTLTFYLVTVVLAYLLTSATRTSSARMWIFLCLTLMFAFERML 399
            E++T    +T    L N+R +  A  R+ + L+ +TSLQ  L  EF  ++T  +Y+++++LAYLLT+   T++AR+W+F+ LT+   FER+L
Sbjct:  212 EDMTNTLAKTNNIALENYRIIQGAFSRIGNNLQYLTSLQMLLLGEFSTIYTGVYYVISILLAYLLTTTPSTANARIWLFIVLTINVIFERLL 303
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BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Match: A0A7D9DS52_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DS52_PARCT)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-8
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = 1 
Query:   34 ILQKTGNVESTLNTLSKAQREAFRAASLDLEEITGQSKRT-METLLANHREMDSANRRVRDTLEQITSLQKTLATEFFDVHTLTFYLVTVVLAYLLTSATRTSSARMWIFLCLTLMFAFERMLV 402
            IL+    ++S L T +++ +EAF    LD+++ T Q K   MET        DS  + V    ++IT LQ  L  EF  +H+L FYLV+++  Y++TSA RT++AR+W+F  L+     ER++V
Sbjct:  191 ILKNEAYLKSALKTSAESAKEAF----LDMKKATAQQKAVLMETF-------DSLFKGV----DRITKLQSMLLGEFMTLHSLGFYLVSILACYIITSAPRTAAARLWLFGVLSAHIVIERLIV 299
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BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Match: F6VY59_CIOIN (Uncharacterized LOC100176859 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6VY59_CIOIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-7
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  211 DTLEQITSLQKTLATEFFDVHTLTFYLVTVVLAYLLTSATRTSSARMWIFLCLTLMFAFERMLVTGH 411
            +  +++ +LQKT+  EF  V+T  FY+    LAY++TS +RT SAR+W+F+ +TL FA ER +V  H
Sbjct:  223 EVFDRVAALQKTVLGEFTSVYTFGFYVGAAFLAYIMTSTSRTGSARIWLFILITLNFATERAVVNYH 289
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BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Match: UPI001F042477 (uncharacterized protein LOC124447094 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F042477)

HSP 1 Score: 57.8 bits (138), Expect = 4.650e-7
Identity = 28/62 (45.16%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  217 LEQITSLQKTLATEFFDVHTLTFYLVTVVLAYLLTSATRTSSARMWIFLCLTLMFAFERMLV 402
            +++IT LQ  L  EF  +H+L FYLV+++  Y++TSA RTS+AR+W+F  L++   FER+++
Sbjct:  239 VDRITKLQSMLLGEFMTLHSLGFYLVSILACYIITSAPRTSAARLWLFGALSMHIVFERLII 300
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BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Match: A0A6F9DGL2_9ASCI (Uncharacterized protein LOC100176859 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DGL2_9ASCI)

HSP 1 Score: 57.8 bits (138), Expect = 4.720e-7
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:  211 DTLEQITSLQKTLATEFFDVHTLTFYLVTVVLAYLLTSATRTSSARMWIFLCLTLMFAFERMLVTGH 411
            +  +++ +LQKT+  EF  V+T  FY+   +LAY+LTS  R++SAR+W+F+ LT+ F  ER +V  H
Sbjct:  221 EVFDRVATLQKTVLGEFTSVYTFAFYVGAALLAYILTSTHRSASARLWLFILLTMNFLTERAIVNYH 287
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BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Match: UPI00193A31BE (LOW QUALITY PROTEIN: uncharacterized protein LOC120341632 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A31BE)

HSP 1 Score: 55.5 bits (132), Expect = 3.020e-6
Identity = 29/63 (46.03%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:  211 DTLEQITSLQKTLATEFFDVHTLTFYLVTVVLAYLLTSATRTSSARMWIFLCLTLMFAFERML 399
            +  +++  LQKT+  EF  ++T  FY+ + ++AY+LTS TRTSSAR+W+FL L +  A ERM+
Sbjct:  221 EVFDRVAVLQKTVLGEFSSIYTFGFYVGSTLMAYILTSTTRTSSARVWLFLILMMNAAAERMI 283
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127253.5486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
B3S694_TRIAD8.380e-938.04Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A7D9DS52_PARCT2.110e-837.10Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
F6VY59_CIOIN1.840e-744.78Uncharacterized LOC100176859 n=1 Tax=Ciona intesti... [more]
UPI001F0424774.650e-745.16uncharacterized protein LOC124447094 n=1 Tax=Xenia... [more]
A0A6F9DGL2_9ASCI4.720e-743.28Uncharacterized protein LOC100176859 n=1 Tax=Phall... [more]
UPI00193A31BE3.020e-646.03LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127253contigM-pyrifera_M_contig127253:55..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog10228.TriadP59725
Hectar predicted targeting categoryother localisation
EggNOG OGs28IPK@1,2QR0N@2759,3A100@33154,3BR10@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815786.392874-CDS-M-pyrifera_M_contig127253:54..4651622815786.392874-CDS-M-pyrifera_M_contig127253:54..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127253 55..465 -
1692277568.8791614-CDS-M-pyrifera_M_contig127253:54..4651692277568.8791614-CDS-M-pyrifera_M_contig127253:54..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127253 55..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127253.5486.1prot_M-pyrifera_M_contig127253.5486.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127253 55..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127253.5486.1

>prot_M-pyrifera_M_contig127253.5486.1 ID=prot_M-pyrifera_M_contig127253.5486.1|Name=mRNA_M-pyrifera_M_contig127253.5486.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MQSDTHDSVTGILQKTGNVESTLNTLSKAQREAFRAASLDLEEITGQSKR
TMETLLANHREMDSANRRVRDTLEQITSLQKTLATEFFDVHTLTFYLVTV
VLAYLLTSATRTSSARMWIFLCLTLMFAFERMLVTGH
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mRNA from alignment at M-pyrifera_M_contig127253:55..465-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127253.5486.1 ID=mRNA_M-pyrifera_M_contig127253.5486.1|Name=mRNA_M-pyrifera_M_contig127253.5486.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig127253:55..465- (Macrocystis pyrifera P11B4 male)
ATGCAGTCAGACACCCACGACAGCGTAACCGGCATCCTCCAGAAGACTGG
CAACGTCGAGTCGACGTTGAATACTCTCTCCAAGGCTCAGCGTGAGGCTT
TTCGCGCAGCCTCGTTGGATCTAGAGGAGATCACAGGCCAGTCGAAGCGC
ACCATGGAGACGTTGCTCGCCAACCACCGCGAGATGGACAGCGCCAACAG
AAGAGTGAGGGACACCCTCGAGCAGATAACGTCCCTCCAAAAGACGCTGG
CAACGGAGTTCTTTGACGTCCACACGCTCACCTTCTACCTGGTGACGGTG
GTGCTCGCCTACCTCCTCACCTCTGCCACGCGGACGTCGTCTGCAAGAAT
GTGGATCTTCCTCTGCCTCACACTGATGTTTGCCTTTGAGAGAATGCTCG
TGACGGGCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127253:55..465-

>mRNA_M-pyrifera_M_contig127253.5486.1 ID=mRNA_M-pyrifera_M_contig127253.5486.1|Name=mRNA_M-pyrifera_M_contig127253.5486.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig127253:55..465- (Macrocystis pyrifera P11B4 male)
ATGCAGTCAGACACCCACGACAGCGTAACCGGCATCCTCCAGAAGACTGG
CAACGTCGAGTCGACGTTGAATACTCTCTCCAAGGCTCAGCGTGAGGCTT
TTCGCGCAGCCTCGTTGGATCTAGAGGAGATCACAGGCCAGTCGAAGCGC
ACCATGGAGACGTTGCTCGCCAACCACCGCGAGATGGACAGCGCCAACAG
AAGAGTGAGGGACACCCTCGAGCAGATAACGTCCCTCCAAAAGACGCTGG
CAACGGAGTTCTTTGACGTCCACACGCTCACCTTCTACCTGGTGACGGTG
GTGCTCGCCTACCTCCTCACCTCTGCCACGCGGACGTCGTCTGCAAGAAT
GTGGATCTTCCTCTGCCTCACACTGATGTTTGCCTTTGAGAGAATGCTCG
TGACGGGCCACATGCAGTCAGACACCCACGACAGCGTAACCGGCATCCTC
CAGAAGACTGGCAACGTCGAGTCGACGTTGAATACTCTCTCCAAGGCTCA
GCGTGAGGCTTTTCGCGCAGCCTCGTTGGATCTAGAGGAGATCACAGGCC
AGTCGAAGCGCACCATGGAGACGTTGCTCGCCAACCACCGCGAGATGGAC
AGCGCCAACAGAAGAGTGAGGGACACCCTCGAGCAGATAACGTCCCTCCA
AAAGACGCTGGCAACGGAGTTCTTTGACGTCCACACGCTCACCTTCTACC
TGGTGACGGTGGTGCTCGCCTACCTCCTCACCTCTGCCACGCGGACGTCG
TCTGCAAGAATGTGGATCTTCCTCTGCCTCACACTGATGTTTGCCTTTGA
GAGAATGCTCGTGACGGGCCAC
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