mRNA_M-pyrifera_M_contig127159.5475.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127159.5475.1
Unique NamemRNA_M-pyrifera_M_contig127159.5475.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A2D6UBZ4_9ACTN (Polyisoprenoid-binding protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UBZ4_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 1.260e-17
Identity = 52/90 (57.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 VAAVAVWFLFFKDDAPDAVTTDAANEQLSEDLADADAXXXSGDADDAGGDAAPVAEG-IDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            V   AVW+LFF  D P+AV  DAAN QL  DLA A        +D+A   A    +G I+  WVVDDEIGEFDF+TASGSFAGFRV EEL
Sbjct:   16 VLIAAVWWLFFWGDTPEAVDVDAANTQLDVDLATA--------SDNAPATAPEAFDGDINATWVVDDEIGEFDFETASGSFAGFRVDEEL 97
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A2D7S0A6_9ACTN (Polyisoprenoid-binding protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7S0A6_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 3.800e-16
Identity = 51/89 (57.30%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    1 VAAVAVWFLFFKDDAPDAVTTDAANEQLSEDLADADAXXXSGDADDAGGDAAPVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            V   AVW+LFF  D P+AV  DAAN QL  DLA A   X +   D   GD       I+  WVVDDEIGEFDF+TA GSFAGFRV EEL
Sbjct:   16 VXIAAVWWLFFWGDTPEAVDVDAANTQLDVDLAVAXDDXPAAAPDPFDGD-------INATWVVDDEIGEFDFETAXGSFAGFRVDEEL 97
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A6B1B143_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B143_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 9.820e-15
Identity = 54/134 (40.30%), Postives = 65/134 (48.51%), Query Frame = 1 
Query:   13 AVWFLFFKDDAPDAVTTDAANEQLSEDLA-----DADAXXXSG--------------------------DADDAGGDA------------------APVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            A+W LFF+DDAP+AV+T+A  EQL +DLA     DAD+    G                          D  +AG +                    P     +GVW VDDE G+FDFDTASGSFAGFRVAEEL
Sbjct:   20 AIWLLFFRDDAPEAVSTEAGLEQLQQDLAADDQDDADSQLDEGAXXXXXXXXXXXXXXXXXXXXXPEIADPGNAGTEIDDEPESTEDQNPEPTVEQRPFVGAANGVWTVDDEFGDFDFDTASGSFAGFRVAEEL 153
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A7K1Z6D5_9ACTN (YceI family protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z6D5_9ACTN)

HSP 1 Score: 75.5 bits (184), Expect = 3.060e-14
Identity = 54/134 (40.30%), Postives = 65/134 (48.51%), Query Frame = 1 
Query:   13 AVWFLFFKDDAPDAVTTDAANEQLSEDLA-----DADAXXXSG--------------------------DADDAGGDA------------------APVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            A+W LFF+DDAP+AV+T+A  EQL +DLA     DAD+    G                          D  +AG +                    P     +GVW VDDE G+FDFDTASGSFAGFRVAEEL
Sbjct:   29 AIWLLFFRDDAPEAVSTEAGLEQLQQDLAADDQDDADSQLDEGAXXXXXXXXXXXXXXXXXXXXXXEIADPGNAGTEVDDEPESTEXXXXXXTVEQRPFVGAANGVWTVDDEFGDFDFDTASGSFAGFRVAEEL 162
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: UPI001E424D4D (YceI family protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E424D4D)

HSP 1 Score: 68.6 bits (166), Expect = 6.130e-12
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   19 WFLFFKDDAPDAVTTDAANEQLSEDLADADAXXXSGDADDAGGDAAPV-AEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            WFL  +DDAPDAV+ DAA E +            S  +  AGG+ A   ++GIDG W VD + G+FDF++ASG+FAGFRV EEL
Sbjct:   25 WFL--RDDAPDAVSLDAARESVE--------ATSSTTSIAAGGEPAEEGSDGIDGTWTVDTDTGDFDFESASGTFAGFRVQEEL 98
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A7X5WPN8_9ACTN (YceI domain-containing protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WPN8_9ACTN)

HSP 1 Score: 64.7 bits (156), Expect = 1.690e-10
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  151 AAPVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            AAPV   ++G+W +DDEIG FDF+TASGSFAGFRVAEEL
Sbjct:  106 AAPVDGTVEGIWEIDDEIGSFDFETASGSFAGFRVAEEL 144
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A3S0BBK0_9ACTN (YceI family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A3S0BBK0_9ACTN)

HSP 1 Score: 64.3 bits (155), Expect = 2.380e-10
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   19 WFLFFKDDAPDAVTTDAANEQLSEDLADADAXXXSGDADDAGGDAAPVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            WFL  +DDAPD V  D A E +S            G +  A G AAP   GIDG W VD   GEFD+++A+G+F GFRV+EEL
Sbjct:   26 WFL--RDDAPDEVDLDTAAEGVS-----TTGSTPGGSSSTAPGGAAPT--GIDGTWTVDTSTGEFDYESATGTFVGFRVSEEL 99
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A6C7E1S7_ILUCY (YceI domain-containing protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E1S7_ILUCY)

HSP 1 Score: 58.2 bits (139), Expect = 4.520e-8
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:   16 VWFLFFKDDAPDAVTTDAANEQLSEDLADADAXXXSGDADDAGGDAAPVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            VW+ FF+ D  D V+ +AA E +      ADA    G A  +G  AA  A  + G W VD   G+FD+++A+GSF GFR+ EEL
Sbjct:   24 VWW-FFRGDPVDEVSLEAATESVIT----ADAAADDGTATPSGEVAAVTATDLSGTWTVDTTSGDFDYESATGSFVGFRIEEEL 102
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BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A6N7FSQ3_9ACTN (YceI domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FSQ3_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 5.370e-8
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:    7 AVAVWFLFFKDDAPDAVTTDAANEQLSEDLADADAXXXSGDADDAGGDAA----PVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            A  VW   F DD+P AV+ +AA   L+    +   XXX       G  AA    P + GI G W VD  +G FD++ A+GSFAGFR+AEEL
Sbjct:   43 AALVWL--FDDDSPPAVSLEAATAALASSTTEGXXXXXXXXXXXQGAPAASTPAPASSGIAGAWAVDTSLGTFDYEAATGSFAGFRIAEEL 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Match: A0A7X7HRU5_9ACTN (YceI family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HRU5_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 1.030e-7
Identity = 43/100 (43.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:    1 VAAVAVWFLFFKDDAPDAVTTDAANEQ-LSEDLADA----------DAXXXSGDADDAGGDAAPVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL 267
            VAA   WFL  +DDAPD V  + A EQ    D AD           D    SGD             GI+G W VD E GEFD+++A+GSF GFR+ EEL
Sbjct:   36 VAAGLFWFL--RDDAPDRVNLEDAIEQNRPTDPADGEGDEPDDTAGDETTTSGDEXXXXXXXXXATGGIEGTWSVDTETGEFDYESATGSFVGFRIQEEL 133
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127159.5475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2D6UBZ4_9ACTN1.260e-1757.78Polyisoprenoid-binding protein n=2 Tax=Acidimicrob... [more]
A0A2D7S0A6_9ACTN3.800e-1657.30Polyisoprenoid-binding protein n=3 Tax=Acidimicrob... [more]
A0A6B1B143_9ACTN9.820e-1540.30Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1Z6D5_9ACTN3.060e-1440.30YceI family protein n=1 Tax=Acidimicrobiaceae bact... [more]
UPI001E424D4D6.130e-1250.00YceI family protein n=1 Tax=Rhabdothermincola sp. ... [more]
A0A7X5WPN8_9ACTN1.690e-1074.36YceI domain-containing protein (Fragment) n=1 Tax=... [more]
A0A3S0BBK0_9ACTN2.380e-1048.19YceI family protein n=1 Tax=Acidimicrobiia bacteri... [more]
A0A6C7E1S7_ILUCY4.520e-842.86YceI domain-containing protein n=1 Tax=Ilumatobact... [more]
A0A6N7FSQ3_9ACTN5.370e-843.96YceI domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A7X7HRU5_9ACTN1.030e-743.00YceI family protein n=1 Tax=Acidimicrobiales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127159contigM-pyrifera_M_contig127159:234..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog1313172.YM304_17800
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the UPF0312 family
EggNOG OGs2IM4N@201174,COG2353@1,COG2353@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.7184114-CDS-M-pyrifera_M_contig127159:233..5001622815785.7184114-CDS-M-pyrifera_M_contig127159:233..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127159 234..500 -
1692277568.5383055-CDS-M-pyrifera_M_contig127159:233..5001692277568.5383055-CDS-M-pyrifera_M_contig127159:233..500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127159 234..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127159.5475.1prot_M-pyrifera_M_contig127159.5475.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127159 234..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127159.5475.1

>prot_M-pyrifera_M_contig127159.5475.1 ID=prot_M-pyrifera_M_contig127159.5475.1|Name=mRNA_M-pyrifera_M_contig127159.5475.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
VAAVAVWFLFFKDDAPDAVTTDAANEQLSEDLADADADADSGDADDAGGD
AAPVAEGIDGVWVVDDEIGEFDFDTASGSFAGFRVAEEL
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mRNA from alignment at M-pyrifera_M_contig127159:234..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127159.5475.1 ID=mRNA_M-pyrifera_M_contig127159.5475.1|Name=mRNA_M-pyrifera_M_contig127159.5475.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig127159:234..500- (Macrocystis pyrifera P11B4 male)
GTCGCTGCGGTCGCGGTGTGGTTCCTGTTCTTCAAGGACGACGCACCGGA
CGCAGTCACGACCGATGCCGCCAACGAGCAGCTCAGCGAAGACCTGGCCG
ACGCCGACGCCGACGCCGATTCTGGCGATGCCGACGACGCGGGTGGCGAC
GCCGCCCCGGTTGCCGAGGGCATCGACGGTGTCTGGGTGGTCGACGACGA
GATCGGCGAGTTCGACTTCGACACCGCCAGCGGCAGCTTCGCCGGCTTCC
GGGTCGCCGAGGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127159:234..500-

>mRNA_M-pyrifera_M_contig127159.5475.1 ID=mRNA_M-pyrifera_M_contig127159.5475.1|Name=mRNA_M-pyrifera_M_contig127159.5475.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig127159:234..500- (Macrocystis pyrifera P11B4 male)
GTCGCTGCGGTCGCGGTGTGGTTCCTGTTCTTCAAGGACGACGCACCGGA
CGCAGTCACGACCGATGCCGCCAACGAGCAGCTCAGCGAAGACCTGGCCG
ACGCCGACGCCGACGCCGATTCTGGCGATGCCGACGACGCGGGTGGCGAC
GCCGCCCCGGTTGCCGAGGGCATCGACGGTGTCTGGGTGGTCGACGACGA
GATCGGCGAGTTCGACTTCGACACCGCCAGCGGCAGCTTCGCCGGCTTCC
GGGTCGCCGAGGAGCTGGTCGCTGCGGTCGCGGTGTGGTTCCTGTTCTTC
AAGGACGACGCACCGGACGCAGTCACGACCGATGCCGCCAACGAGCAGCT
CAGCGAAGACCTGGCCGACGCCGACGCCGACGCCGATTCTGGCGATGCCG
ACGACGCGGGTGGCGACGCCGCCCCGGTTGCCGAGGGCATCGACGGTGTC
TGGGTGGTCGACGACGAGATCGGCGAGTTCGACTTCGACACCGCCAGCGG
CAGCTTCGCCGGCTTCCGGGTCGCCGAGGAGCTG
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