mRNA_M-pyrifera_M_contig127147.5472.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127147.5472.1
Unique NamemRNA_M-pyrifera_M_contig127147.5472.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A8H7SBT8_9FUNG (Ribonucloprotein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SBT8_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 1.530e-37
Identity = 65/109 (59.63%), Postives = 87/109 (79.82%), Query Frame = 1
Query:   10 EGVKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGG 336
            + +K++SPIA P+A++ L  KL K V K  + K +RRGVKEV KA+R+G  KGLVVIAGD+ PMDVISH+PV CE+H +PYVFVPS+++LG+A++ KRPTSV +I  GG
Sbjct:   25 DSLKFLSPIAHPLAEKKLSKKLFKTVKKASKVKHIRRGVKEVGKAVRKGE-KGLVVIAGDISPMDVISHLPVLCEDHDIPYVFVPSKEKLGEASQTKRPTSVAMIVFGG 132          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A8H7BM87_9FUNG (Ribonucloprotein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BM87_9FUNG)

HSP 1 Score: 130 bits (328), Expect = 1.350e-36
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    1 GAGEGVKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            G    +++VSPIA P+A++ L  KL K   K  + K +RRGVKEV K+LR+G  KGLV+IAGD+ P+DVISH+PV CE+H+VPY+FVPS++ELG+A   KRPTSV +I  GG +
Sbjct:   18 GESSVIRHVSPIAHPLAEKKLTKKLFKTAKKASKVKHVRRGVKEVAKSLRKGE-KGLVIIAGDISPIDVISHMPVLCEDHNVPYIFVPSKEELGEAVATKRPTSVAMIVLGGKQ 130          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A1X2I8D8_9FUNG (Ribonucloprotein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I8D8_9FUNG)

HSP 1 Score: 127 bits (320), Expect = 2.340e-35
Identity = 64/109 (58.72%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   16 VKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            V++ SPIA PMA+  L  K+ K V K  ++K +RRGVKEV KALR+G  KGLVVIAGD+ P+DVI+H+PV CE+ +VPYVFVPS+++LG+AA  KRPTSV ++  GG +
Sbjct:   25 VRFASPIAHPMAEEKLAKKIQKTVKKASKAKHVRRGVKEVGKALRKGE-KGLVVIAGDISPIDVIAHLPVLCEDSNVPYVFVPSKEQLGEAASTKRPTSVTMVVLGGQK 132          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A1X2G374_9FUNG (Ribonucloprotein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G374_9FUNG)

HSP 1 Score: 126 bits (317), Expect = 9.150e-35
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 1
Query:   16 VKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            V YVSPIA PMA   +  KL K V K  ++K + RGVKEV KAL +G  KGLVVIAGD+ PMDVI+H+PV CE+H VPYVFVPS+++LG+A   KRPTSV ++  GG +
Sbjct:   25 VYYVSPIAHPMADDKMSKKLFKTVKKASKAKHVCRGVKEVAKALSKGE-KGLVVIAGDISPMDVIAHMPVLCEDHDVPYVFVPSKEQLGEACATKRPTSVSMVVLGGKK 132          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A1X2IHZ4_9FUNG (Ribonucloprotein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IHZ4_9FUNG)

HSP 1 Score: 125 bits (313), Expect = 2.400e-34
Identity = 62/109 (56.88%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   16 VKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            V++ SPIA PMA+  L  K+ K + K  ++K +RRGVKEV KALR+G  KGLVVIAGD+ P+DVI+H+PV CE+ +VPYVFVPS+++LG++A  KRPTSV ++  GG +
Sbjct:   22 VRFASPIAHPMAEDKLTKKIHKTIKKASKAKHVRRGVKEVGKALRKGE-KGLVVIAGDISPIDVIAHLPVLCEDSNVPYVFVPSKEQLGESASTKRPTSVTMVVLGGQK 129          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A0W0DF42_CANGB (Ribonucloprotein n=2 Tax=Candida glabrata TaxID=5478 RepID=A0A0W0DF42_CANGB)

HSP 1 Score: 124 bits (311), Expect = 3.720e-34
Identity = 63/106 (59.43%), Postives = 79/106 (74.53%), Query Frame = 1
Query:   25 VSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            V P A P+A + L  K+LK V K   +K ++RGVKEVVKALR+G  KGLVVIAGD+ P DVISHIPV CE+H VPY+FVPS+ +LG A+  KRPTSV+ I  G ++
Sbjct:   21 VLPFAKPLASKKLNKKVLKTVKKASRAKNVKRGVKEVVKALRKGE-KGLVVIAGDISPADVISHIPVLCEDHGVPYLFVPSKQDLGSASATKRPTSVIFIVPGSNK 125          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: H2AVN2_KAZAF (Ribonucloprotein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AVN2_KAZAF)

HSP 1 Score: 124 bits (311), Expect = 3.940e-34
Identity = 63/106 (59.43%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   25 VSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            V   A P+A + L  K+LK V K  ++K ++RGV+EVVKALR+G  KGLVVIAGD++P DVISH+PV CE+HSVPYVFVPS+ +LG A   KRPTSVV I  G ++
Sbjct:   21 VIEFAKPLASKKLNKKVLKTVKKASKAKNVKRGVREVVKALRKGD-KGLVVIAGDIFPYDVISHLPVLCEDHSVPYVFVPSKQDLGSAGATKRPTSVVFIVPGSNK 125          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A168T3L2_ABSGL (Ribonucloprotein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T3L2_ABSGL)

HSP 1 Score: 124 bits (311), Expect = 4.830e-34
Identity = 63/111 (56.76%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   10 EGVKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            E  ++ SPIA PMA+  L  K+ K V K  ++K +RRGVKEV KALR+G  KGLVVIAGD+ P+DVI+H+PV CE+ +VPYVFVPS++ LG+A+  KRPTSV ++  GG +
Sbjct:   19 EVARFASPIAHPMAEDKLSKKIHKTVKKASKAKHVRRGVKEVGKALRKGE-KGLVVIAGDISPIDVIAHLPVLCEDSNVPYVFVPSKENLGEASATKRPTSVTMVVLGGQK 128          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A2T0FJF4_9ASCO (Ribonucloprotein n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FJF4_9ASCO)

HSP 1 Score: 124 bits (310), Expect = 4.830e-34
Identity = 60/106 (56.60%), Postives = 82/106 (77.36%), Query Frame = 1
Query:   25 VSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGGSR 342
            V P + P+A + L  K+LK + K  ++K  +RGVKEVVK+LR+G  KGLV+IAGD++P DVISHIPV CE++ VPYVFVPS+++LG A   KRPTS V++T GG++
Sbjct:   16 VLPFSHPLASKKLNKKVLKTIKKASKAKIAKRGVKEVVKSLRKGD-KGLVIIAGDIWPADVISHIPVLCEDNKVPYVFVPSKEDLGHAGSTKRPTSCVMVTPGGAQ 120          
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Match: A0A367KXK1_RHIST (Ribonucloprotein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KXK1_RHIST)

HSP 1 Score: 124 bits (310), Expect = 6.840e-34
Identity = 63/112 (56.25%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 GAGEGVKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALRRGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCKRPTSVVLITHGG 336
            G+ E   + SPIA P+A   L  KL K V K  + K +RRGVKEV KALR+G  KGLV+IAGD+ P+DVISH+PV CE+ +VPY+FVPS+++LG+A+  KRPTSV ++  GG
Sbjct:   16 GSTEVPYFQSPIAHPLADDKLTKKLFKTVKKASKVKHVRRGVKEVAKALRKGE-KGLVIIAGDISPLDVISHMPVLCEDSNVPYIFVPSKEQLGEASSTKRPTSVTMVVFGG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127147.5472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7SBT8_9FUNG1.530e-3759.63Ribonucloprotein n=1 Tax=Mucor circinatus TaxID=20... [more]
A0A8H7BM87_9FUNG1.350e-3656.14Ribonucloprotein n=1 Tax=Apophysomyces ossiformis ... [more]
A0A1X2I8D8_9FUNG2.340e-3558.72Ribonucloprotein n=1 Tax=Absidia repens TaxID=9026... [more]
A0A1X2G374_9FUNG9.150e-3559.63Ribonucloprotein n=1 Tax=Hesseltinella vesiculosa ... [more]
A0A1X2IHZ4_9FUNG2.400e-3456.88Ribonucloprotein n=1 Tax=Absidia repens TaxID=9026... [more]
A0A0W0DF42_CANGB3.720e-3459.43Ribonucloprotein n=2 Tax=Candida glabrata TaxID=54... [more]
H2AVN2_KAZAF3.940e-3459.43Ribonucloprotein n=1 Tax=Kazachstania africana (st... [more]
A0A168T3L2_ABSGL4.830e-3456.76Ribonucloprotein n=1 Tax=Absidia glauca TaxID=4829... [more]
A0A2T0FJF4_9ASCO4.830e-3456.60Ribonucloprotein n=1 Tax=Wickerhamiella sorbophila... [more]
A0A367KXK1_RHIST6.840e-3456.25Ribonucloprotein n=1 Tax=Rhizopus stolonifer TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127147contigM-pyrifera_M_contig127147:141..482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score127.1
Seed ortholog evalue5.3e-27
Seed eggNOG ortholog936053.I1CTZ2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BAR domain
EggNOG OGs1GW3J@112252,3A0G7@33154,3Q0Y5@4751,COG1358@1,KOG3167@2759,KOG3771@1,KOG3771@2759
COG Functional cat.AU
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.601789-CDS-M-pyrifera_M_contig127147:140..4821622815785.601789-CDS-M-pyrifera_M_contig127147:140..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127147 141..482 -
1692277568.484135-CDS-M-pyrifera_M_contig127147:140..4821692277568.484135-CDS-M-pyrifera_M_contig127147:140..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127147 141..482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127147.5472.1prot_M-pyrifera_M_contig127147.5472.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127147 141..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127147.5472.1

>prot_M-pyrifera_M_contig127147.5472.1 ID=prot_M-pyrifera_M_contig127147.5472.1|Name=mRNA_M-pyrifera_M_contig127147.5472.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
GAGEGVKYVSPIAFPMAQRALQAKLLKLVTKGVESKTLRRGVKEVVKALR
RGPGKGLVVIAGDMYPMDVISHIPVFCEEHSVPYVFVPSRDELGKAARCK
RPTSVVLITHGGSR
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mRNA from alignment at M-pyrifera_M_contig127147:141..482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127147.5472.1 ID=mRNA_M-pyrifera_M_contig127147.5472.1|Name=mRNA_M-pyrifera_M_contig127147.5472.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig127147:141..482- (Macrocystis pyrifera P11B4 male)
GGGGCGGGAGAAGGGGTCAAGTACGTGAGCCCCATCGCATTCCCCATGGC GCAGCGGGCACTACAGGCGAAATTGCTCAAACTGGTCACAAAAGGAGTCG AGTCCAAAACCCTCCGCCGTGGCGTCAAGGAAGTCGTCAAGGCCCTGCGC AGGGGGCCCGGGAAGGGCCTGGTGGTTATCGCTGGCGACATGTACCCCAT GGACGTCATTTCCCACATTCCAGTCTTTTGCGAGGAACACTCCGTGCCCT ACGTCTTCGTGCCCTCCAGGGACGAGCTCGGAAAGGCCGCACGCTGCAAG AGACCCACCTCCGTCGTCCTCATCACACACGGGGGATCCAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127147:141..482-

>mRNA_M-pyrifera_M_contig127147.5472.1 ID=mRNA_M-pyrifera_M_contig127147.5472.1|Name=mRNA_M-pyrifera_M_contig127147.5472.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig127147:141..482- (Macrocystis pyrifera P11B4 male)
GGGGCGGGAGAAGGGGTCAAGTACGTGAGCCCCATCGCATTCCCCATGGC
GCAGCGGGCACTACAGGCGAAATTGCTCAAACTGGTCACAAAAGGAGTCG
AGTCCAAAACCCTCCGCCGTGGCGTCAAGGAAGTCGTCAAGGCCCTGCGC
AGGGGGCCCGGGAAGGGCCTGGTGGTTATCGCTGGCGACATGTACCCCAT
GGACGTCATTTCCCACATTCCAGTCTTTTGCGAGGAACACTCCGTGCCCT
ACGTCTTCGTGCCCTCCAGGGACGAGCTCGGAAAGGCCGCACGCTGCAAG
AGACCCACCTCCGTCGTCCTCATCACACACGGGGGATCCAGAGGGGCGGG
AGAAGGGGTCAAGTACGTGAGCCCCATCGCATTCCCCATGGCGCAGCGGG
CACTACAGGCGAAATTGCTCAAACTGGTCACAAAAGGAGTCGAGTCCAAA
ACCCTCCGCCGTGGCGTCAAGGAAGTCGTCAAGGCCCTGCGCAGGGGGCC
CGGGAAGGGCCTGGTGGTTATCGCTGGCGACATGTACCCCATGGACGTCA
TTTCCCACATTCCAGTCTTTTGCGAGGAACACTCCGTGCCCTACGTCTTC
GTGCCCTCCAGGGACGAGCTCGGAAAGGCCGCACGCTGCAAGAGACCCAC
CTCCGTCGTCCTCATCACACACGGGGGATCCAGA
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