mRNA_M-pyrifera_M_contig127140.5471.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127140.5471.1
Unique NamemRNA_M-pyrifera_M_contig127140.5471.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A812JYY3_9DINO (Phosphodiesterase n=3 Tax=Sar TaxID=2698737 RepID=A0A812JYY3_9DINO)

HSP 1 Score: 138 bits (347), Expect = 7.680e-36
Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    1 AWRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            AWR +WGAK+ WPADMPDDMLRMA++ SK +I  + DWQADGD AV  ++  F++ +G  WH V+GKHFGSL THESRR CFFY  DKAV+++K+
Sbjct: 1160 AWRTMWGAKVLWPADMPDDMLRMAVEQSKLEIDKITDWQADGDAAVAAVRDKFNETFGRHWHCVMGKHFGSLVTHESRRMCFFYYGDKAVLLFKA 1254          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.310e-34
Identity = 47/94 (50.00%), Postives = 73/94 (77.66%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            W+ +WGAK++WP+D+PDDML  AI V++  +  +EDW+++GD  V+++K  FD+ +G  WH VVG +FGS  THE+RRF +FY+ DKAV+++K+
Sbjct:    9 WKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKA 102          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.640e-30
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            W+ +WGAK++ P D+PDDML+ AI  S+  IG   D++A+G    E+IK  FD+ +   WHV++GK+FGS  THE++RF +FY DDKAVMIYK+
Sbjct:    8 WQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKA 101          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.000e-29
Identity = 47/94 (50.00%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            WR +WGAK++ P DMPDD+L+ AID S+E +    D++A+G  + E+IK   D+ +   WHVV+G++FGS  THE+R F +FY+ DKAVM+YK+
Sbjct:    8 WRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKA 101          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.860e-27
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            W  +WGA+++ P DM DDML+ A++ ++       D++ DG KA E IK AFD+ +   WHVVVG+ FGS  THE++ F +FYLDDKAVM+YK+
Sbjct:    9 WSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKA 102          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.280e-26
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            W ++WGAK++ P DM DDMLR AI+  ++ +    D++A+G  A E+IK  FD  +   WHV++G++FGS  THE+  F +FYL DKA+M+YK+
Sbjct:    8 WAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKA 101          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A7S3HH61_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH61_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.920e-24
Identity = 41/94 (43.62%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            ++ +WGA+I WPAD+PD+M ++A++ +++ +      + +G K  E++K  FD+ YG  WHV VGK+FG  A HE +RF +FY+D  A MIYK+
Sbjct:   37 YKTLWGARILWPADIPDNMCQVAVEQAQKALEEAGKQEKEGQKVAEKLKKHFDENYGPYWHVTVGKNFGCHAVHEKQRFVYFYIDQFAFMIYKA 130          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.890e-23
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYK 282
            W+ IWGAK++ P +MPDD+L+ AI     ++ A E+++++G+ AV+ IK   D  +   W   +G++FGS  +HE+RRF FFY +DKAVM+YK
Sbjct:   10 WQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYK 102          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A813FD47_POLGL (Dynein light chain n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FD47_POLGL)

HSP 1 Score: 94.4 bits (233), Expect = 8.230e-23
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDW---QADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            ++ +WGA+I WP D+PDDML  A+   K  + A+E++   +A G K  E+IK AFD+ Y   WHV VGK+FG    HE +RF +FY+D  A MIYK+
Sbjct:   38 YKSLWGARILWPPDLPDDMLEDAV---KTSLAALEEFGKNEAQGPKISEKIKKAFDEKYKPYWHVTVGKNFGCHTVHEKQRFVYFYVDQFAFMIYKA 131          
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Match: A0A7S1VZS4_ALECA (Dynein light chain n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1VZS4_ALECA)

HSP 1 Score: 93.6 bits (231), Expect = 1.790e-22
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    4 WRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIKAAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKS 285
            ++ +WGA+++WPAD+PD+ML  A+  S          + +G K  E+IK  FD+ +G  WH  VGK+FG  A HE +RF +FY+D  A MIYK+
Sbjct:   41 YKTLWGARVRWPADLPDNMLEDAVKTSTAAFEEFGKLEREGQKMAEKIKKHFDENWGPYWHATVGKNFGCHAVHEKQRFVYFYIDQFAFMIYKA 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127140.5471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812JYY3_9DINO7.680e-3662.11Phosphodiesterase n=3 Tax=Sar TaxID=2698737 RepID=... [more]
A0A7S1CI82_9STRA8.310e-3450.00Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
A0A7S2W886_9STRA3.640e-3052.13Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A836CJA1_9STRA6.000e-2950.00Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1TPD3_9STRA5.860e-2750.00Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
D7G1V9_ECTSI3.280e-2646.81Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3HH61_9STRA4.920e-2443.62Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]
A0A7S2WLS4_9STRA1.890e-2345.16Dynein light chain n=1 Tax=Eucampia antarctica Tax... [more]
A0A813FD47_POLGL8.230e-2347.42Dynein light chain n=1 Tax=Polarella glacialis Tax... [more]
A0A7S1VZS4_ALECA1.790e-2243.62Dynein light chain n=1 Tax=Alexandrium catenella T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127140contigM-pyrifera_M_contig127140:63..353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog2880.D7G1V9
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.5665982-CDS-M-pyrifera_M_contig127140:62..3531622815785.5665982-CDS-M-pyrifera_M_contig127140:62..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127140 63..353 -
1692277568.4716191-CDS-M-pyrifera_M_contig127140:62..3531692277568.4716191-CDS-M-pyrifera_M_contig127140:62..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127140 63..353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127140.5471.1prot_M-pyrifera_M_contig127140.5471.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127140 63..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127140.5471.1

>prot_M-pyrifera_M_contig127140.5471.1 ID=prot_M-pyrifera_M_contig127140.5471.1|Name=mRNA_M-pyrifera_M_contig127140.5471.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
AWRRIWGAKIQWPADMPDDMLRMAIDVSKEKIGAVEDWQADGDKAVEEIK
AAFDKAYGSPWHVVVGKHFGSLATHESRRFCFFYLDDKAVMIYKSA*
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mRNA from alignment at M-pyrifera_M_contig127140:63..353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127140.5471.1 ID=mRNA_M-pyrifera_M_contig127140.5471.1|Name=mRNA_M-pyrifera_M_contig127140.5471.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig127140:63..353- (Macrocystis pyrifera P11B4 male)
GCATGGCGGCGCATTTGGGGTGCGAAAATTCAGTGGCCGGCAGATATGCC AGACGACATGCTGCGGATGGCCATCGATGTGTCCAAGGAGAAGATCGGGG CCGTGGAGGACTGGCAAGCGGATGGAGACAAGGCCGTGGAGGAAATTAAG GCCGCATTCGACAAGGCCTACGGCTCACCCTGGCACGTCGTCGTTGGAAA ACACTTTGGCAGCCTCGCCACCCACGAGTCCAGACGGTTCTGCTTCTTCT ACCTCGACGACAAGGCAGTCATGATCTACAAGAGCGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127140:63..353-

>mRNA_M-pyrifera_M_contig127140.5471.1 ID=mRNA_M-pyrifera_M_contig127140.5471.1|Name=mRNA_M-pyrifera_M_contig127140.5471.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig127140:63..353- (Macrocystis pyrifera P11B4 male)
GCATGGCGGCGCATTTGGGGTGCGAAAATTCAGTGGCCGGCAGATATGCC
AGACGACATGCTGCGGATGGCCATCGATGTGTCCAAGGAGAAGATCGGGG
CCGTGGAGGACTGGCAAGCGGATGGAGACAAGGCCGTGGAGGAAATTAAG
GCCGCATTCGACAAGGCCTACGGCTCACCCTGGCACGTCGTCGTTGGAAA
ACACTTTGGCAGCCTCGCCACCCACGAGTCCAGACGGTTCTGCTTCTTCT
ACCTCGACGACAAGGCAGTCATGATCTACAAGAGCGCCTAAGCATGGCGG
CGCATTTGGGGTGCGAAAATTCAGTGGCCGGCAGATATGCCAGACGACAT
GCTGCGGATGGCCATCGATGTGTCCAAGGAGAAGATCGGGGCCGTGGAGG
ACTGGCAAGCGGATGGAGACAAGGCCGTGGAGGAAATTAAGGCCGCATTC
GACAAGGCCTACGGCTCACCCTGGCACGTCGTCGTTGGAAAACACTTTGG
CAGCCTCGCCACCCACGAGTCCAGACGGTTCTGCTTCTTCTACCTCGACG
ACAAGGCAGTCATGATCTACAAGAGCGCCTAA
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