mRNA_M-pyrifera_M_contig127119.5469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127119.5469.1
Unique NamemRNA_M-pyrifera_M_contig127119.5469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A7S1C9H8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9H8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.090e-15
Identity = 35/65 (53.85%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWKLL 195
            VNQYV+ E LG+GAFG V+R  ++T+    AVK++ KS+L+++R+GRF NAL++V++EVA+WK L
Sbjct:   61 VNQYVIFEELGRGAFGKVKRCFNKTDRTMYAVKIMKKSLLKKKRIGRFGNALQNVQKEVAIWKRL 125          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A5D6XJ88_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJ88_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.530e-12
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY  LE LG+GA+G V R ES       A K++ K  L+R RVGRF NAL+SVK+E+++WK
Sbjct:  110 LNQYTFLEELGRGAYGLVLRVESNETKEVFAAKIVDKKALKRVRVGRFGNALQSVKKELSIWK 172          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A6A3Z9I2_9STRA (Protein kinase domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z9I2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.060e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY+ +E LGKGA+G V + ES       A K + K  L+R RVGRF NAL+SVK+E+ +WK
Sbjct:  148 LNQYMFMEQLGKGAYGIVFKVESNETKEVFAAKCVDKKALKRIRVGRFGNALQSVKKELNIWK 210          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A8K1C5Q4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Q4_PYTOL)

HSP 1 Score: 63.9 bits (154), Expect = 2.440e-10
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY   E LG+GA+G V R +S       A K++ K  L++ RVGRF NAL+SVK+E+A+W+
Sbjct:   86 LNQYTFHEELGRGAYGLVLRVQSNETSEFFAAKIVNKKALKKVRVGRFGNALQSVKKELAIWQ 148          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A329RTR9_9STRA (Protein kinase domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RTR9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.380e-10
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY  +E LGKGA+G V + E        A K + K  L+R RVGRF NAL+SVK+E+ +WK
Sbjct:  166 LNQYTFMEQLGKGAYGIVFKVECNETKEAFAAKCVDKKALKRIRVGRFGNALQSVKKELNIWK 228          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A7S3G2V1_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G2V1_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 4.300e-10
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            VN Y +L VLG+GA+G V+ A         A+K++ KS+L+R+R+GRFSNAL+++ +E+A+ K
Sbjct:   28 VNAYQVLNVLGRGAYGKVKLARHTETRDLYAIKILKKSMLKRKRIGRFSNALQNIMKEIAIMK 90          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: W2Q8V8_PHYPN (CAMKK/CAMKK-META protein kinase n=8 Tax=Phytophthora TaxID=4783 RepID=W2Q8V8_PHYPN)

HSP 1 Score: 63.2 bits (152), Expect = 4.620e-10
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY  +E LGKGA+G V + E        A K + K  L+R RVGRF NAL+SVK+E+ +WK
Sbjct:  187 LNQYTFMEQLGKGAYGIVFKVECNDTKEVFAAKCVDKKALKRIRVGRFGNALQSVKKELNIWK 249          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A833SGM6_PHYIN (Protein kinase domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SGM6_PHYIN)

HSP 1 Score: 63.2 bits (152), Expect = 4.630e-10
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY  +E LGKGA+G V + E        A K + K  L+R RVGRF NAL+SVK+E+ +WK
Sbjct:  209 LNQYTFMEQLGKGAYGIVFKVECNETKEVFAAKCVDKKALKRIRVGRFGNALQSVKKELNIWK 271          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A2D4BIV0_PYTIN (CAMKK/CAMKK-META protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIV0_PYTIN)

HSP 1 Score: 62.0 bits (149), Expect = 1.190e-9
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            +NQY   E L +GA+G V R +S       A K + K  LR+ RVGRF NAL+SVK+E+A+W+
Sbjct:  395 LNQYTFFEELXRGAYGVVLRVQSNETKEFFAAKTVDKKALRKVRVGRFGNALQSVKKELAIWQ 457          
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Match: A0A7S3DEH9_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DEH9_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 5.680e-9
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSNALESVKREVAVWK 189
            VNQY L E +G+GAFG V+R ES  +G + AVK++ KS+L+R+R    + A   V REVAV K
Sbjct:   31 VNQYKLFEKIGEGAFGKVKRCESVVDGREYAVKIMNKSLLKRKRFDVSTTAFHQVMREVAVMK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127119.5469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C9H8_9STRA3.090e-1553.85Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5D6XJ88_9STRA3.530e-1252.38Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A6A3Z9I2_9STRA7.060e-1150.79Protein kinase domain-containing protein n=9 Tax=P... [more]
A0A8K1C5Q4_PYTOL2.440e-1047.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329RTR9_9STRA3.380e-1049.21Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7S3G2V1_9EUKA4.300e-1046.03Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
W2Q8V8_PHYPN4.620e-1049.21CAMKK/CAMKK-META protein kinase n=8 Tax=Phytophtho... [more]
A0A833SGM6_PHYIN4.630e-1049.21Protein kinase domain n=1 Tax=Phytophthora infesta... [more]
A0A2D4BIV0_PYTIN1.190e-947.62CAMKK/CAMKK-META protein kinase n=1 Tax=Pythium in... [more]
A0A7S3DEH9_9EUKA5.680e-950.79Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127119contigM-pyrifera_M_contig127119:308..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog115417.EPrPW00000021834
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Calcium calmodulin-dependent protein kinase kinase. Source PGD
EggNOG OGs1MBV6@121069,KOG0585@1,KOG0585@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.4811828-CDS-M-pyrifera_M_contig127119:307..5021622815785.4811828-CDS-M-pyrifera_M_contig127119:307..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127119 308..502 +
1692277568.4344401-CDS-M-pyrifera_M_contig127119:307..5021692277568.4344401-CDS-M-pyrifera_M_contig127119:307..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127119 308..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127119.5469.1prot_M-pyrifera_M_contig127119.5469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127119 308..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127119.5469.1

>prot_M-pyrifera_M_contig127119.5469.1 ID=prot_M-pyrifera_M_contig127119.5469.1|Name=mRNA_M-pyrifera_M_contig127119.5469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
VNQYVLLEVLGKGAFGTVRRAESQTNGVQVAVKVIAKSVLRRRRVGRFSN
ALESVKREVAVWKLL
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mRNA from alignment at M-pyrifera_M_contig127119:308..502+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127119.5469.1 ID=mRNA_M-pyrifera_M_contig127119.5469.1|Name=mRNA_M-pyrifera_M_contig127119.5469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig127119:308..502+ (Macrocystis pyrifera P11B4 male)
GTGAACCAGTATGTGTTGTTGGAGGTGCTTGGGAAAGGGGCGTTTGGAAC GGTCAGGAGGGCGGAAAGTCAGACGAACGGGGTGCAAGTGGCCGTGAAGG TGATTGCCAAGAGTGTGTTGCGGCGAAGGAGGGTGGGACGGTTTAGTAAT GCGTTGGAGTCTGTGAAACGAGAGGTGGCGGTGTGGAAGTTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127119:308..502+

>mRNA_M-pyrifera_M_contig127119.5469.1 ID=mRNA_M-pyrifera_M_contig127119.5469.1|Name=mRNA_M-pyrifera_M_contig127119.5469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig127119:308..502+ (Macrocystis pyrifera P11B4 male)
GTGAACCAGTATGTGTTGTTGGAGGTGCTTGGGAAAGGGGCGTTTGGAAC
GGTCAGGAGGGCGGAAAGTCAGACGAACGGGGTGCAAGTGGCCGTGAAGG
TGATTGCCAAGAGTGTGTTGCGGCGAAGGAGGGTGGGACGGTTTAGTAAT
GCGTTGGAGTCTGTGAAACGAGAGGTGGCGGTGTGGAAGTTGCTCGTGAA
CCAGTATGTGTTGTTGGAGGTGCTTGGGAAAGGGGCGTTTGGAACGGTCA
GGAGGGCGGAAAGTCAGACGAACGGGGTGCAAGTGGCCGTGAAGGTGATT
GCCAAGAGTGTGTTGCGGCGAAGGAGGGTGGGACGGTTTAGTAATGCGTT
GGAGTCTGTGAAACGAGAGGTGGCGGTGTGGAAGTTGCTC
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