mRNA_M-pyrifera_M_contig127101.5461.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127101.5461.1
Unique NamemRNA_M-pyrifera_M_contig127101.5461.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127101.5461.1 vs. uniprot
Match: A0A8J7II08_9NOST (DUF4347 domain-containing protein n=1 Tax=Dendronalium phyllosphericum CENA369 TaxID=1725256 RepID=A0A8J7II08_9NOST)

HSP 1 Score: 65.5 bits (158), Expect = 7.880e-10
Identity = 36/90 (40.00%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    1 LTSFGGSFYYRAFDPDHGVELWRSAGSTASTGLVADLRPG----------PLPSTPMRAVPLGGELLFVATGASGAVEWHKTDGVTTSVV 240
            LTS   + Y+RA+DP HG ELW+S G+TA T LV D+ PG          P  S+P       G L F+A   +   E  K+DG T   V
Sbjct: 1011 LTSVNNTLYFRAYDPTHGFELWKSNGTTAGTVLVKDINPGVVTTASGETFPNSSSPQSLTNANGILYFIADDGTHGYELWKSDGTTAGTV 1100
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BLAST of mRNA_M-pyrifera_M_contig127101.5461.1 vs. uniprot
Match: A0A8J7LQG9_9NOST (DUF4347 domain-containing protein n=1 Tax=Dendronalium phyllosphericum CENA369 TaxID=1725256 RepID=A0A8J7LQG9_9NOST)

HSP 1 Score: 53.9 bits (128), Expect = 8.600e-6
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1 
Query:    1 LTSFGGSFYYRAFDPDHGVELWRSAGSTASTGLVADLRPGPLPSTPMRAVP----LGGELLFVATGASGAVEWHKTDGVTTSVV 240
            LT+  G+FY+ A D  HG+ELW+S G+TA T LV D+ PG   S     +     + G   F A   +  +E  K+DG T   V
Sbjct:  509 LTNINGTFYFFADDGIHGLELWKSDGTTAGTVLVKDINPGIGGSNYSNNISNFFNVNGIFYFAADDGTHGLELWKSDGTTAGTV 592
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BLAST of mRNA_M-pyrifera_M_contig127101.5461.1 vs. uniprot
Match: A0A2V7YGB9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7YGB9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-5
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 LTSFGGSFYYRAFDPDHGVELWRSAGSTASTGLVADLRPGPLPSTP 138
             T  G   Y+RA+DP HG+ELWR+ G+ A T LV DL PGP    P
Sbjct:  300 FTVLGDRLYFRAWDPAHGLELWRTDGTPAGTVLVRDLAPGPASGDP 345
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BLAST of mRNA_M-pyrifera_M_contig127101.5461.1 vs. uniprot
Match: A0A367S252_9NOSO (Uncharacterized protein n=1 Tax=Nostoc minutum NIES-26 TaxID=1844469 RepID=A0A367S252_9NOSO)

HSP 1 Score: 52.4 bits (124), Expect = 2.960e-5
Identity = 32/84 (38.10%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:    1 LTSFGGSFYYRAFDPDHGVELWRSAGSTASTGLVADLRPGPLPSTPMRAVP----LGGELLFVATGASGAVEWHKTDGVTTSVV 240
            LT+  G+FY+ A D  HG+ELW+S G+TA T LV D+ PG   S     +     + G   F A   +   E  K+DG T   V
Sbjct:  512 LTNINGTFYFFANDGIHGLELWKSDGTTAGTVLVKDINPGIGGSNYSNNISNFFNVNGIFYFAADDGTHGRELWKSDGTTAGTV 595
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BLAST of mRNA_M-pyrifera_M_contig127101.5461.1 vs. uniprot
Match: A0A522M0C8_9BACT (Calx-beta domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522M0C8_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.350e-5
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 1 
Query:   13 GGSFYYRAFDPDHGVELWRSAGSTASTGLVADLRPGPLPS---TPMRAVPLGGELLFVATGASGAVEWHKTDGVTTSVV 240
            GG+  + A   D    +WRS G+TA T  + D   GP+ +   T  R + + GELLF ATG+SGA    ++DG T   V
Sbjct:  494 GGAAVFSAMSNDGYCRVWRSDGTTAGTLQLLDWAQGPMANATGTIGRMINVNGELLFTATGSSGAPAAWRSDGTTNGTV 572
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127101.5461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A8J7II08_9NOST7.880e-1040.00DUF4347 domain-containing protein n=1 Tax=Dendrona... [more]
A0A8J7LQG9_9NOST8.600e-638.10DUF4347 domain-containing protein n=1 Tax=Dendrona... [more]
A0A2V7YGB9_9BACT1.400e-552.17Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A367S252_9NOSO2.960e-538.10Uncharacterized protein n=1 Tax=Nostoc minutum NIE... [more]
A0A522M0C8_9BACT7.350e-539.24Calx-beta domain-containing protein n=1 Tax=Acidob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127101contigM-pyrifera_M_contig127101:122..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog575540.Isop_1603
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Involved in the tonB-independent uptake of proteins
EggNOG OGsCOG0823@1,COG0823@2
COG Functional cat.U
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.1522887-CDS-M-pyrifera_M_contig127101:121..5051622815785.1522887-CDS-M-pyrifera_M_contig127101:121..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127101 122..505 -
1692277568.2781227-CDS-M-pyrifera_M_contig127101:121..5051692277568.2781227-CDS-M-pyrifera_M_contig127101:121..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127101 122..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127101.5461.1prot_M-pyrifera_M_contig127101.5461.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127101 122..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127101.5461.1

>prot_M-pyrifera_M_contig127101.5461.1 ID=prot_M-pyrifera_M_contig127101.5461.1|Name=mRNA_M-pyrifera_M_contig127101.5461.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LTSFGGSFYYRAFDPDHGVELWRSAGSTASTGLVADLRPGPLPSTPMRAV
PLGGELLFVATGASGAVEWHKTDGVTTSVVTPIAPPGLSASIGSEVLQGG
HVLFTASDGATGIELWRTDGTAAGTQQV
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mRNA from alignment at M-pyrifera_M_contig127101:122..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127101.5461.1 ID=mRNA_M-pyrifera_M_contig127101.5461.1|Name=mRNA_M-pyrifera_M_contig127101.5461.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig127101:122..505- (Macrocystis pyrifera P11B4 male)
CTGACCTCGTTCGGCGGGTCGTTCTACTACCGCGCGTTCGACCCGGACCA
CGGCGTCGAGCTCTGGCGCAGCGCCGGGTCGACCGCTTCGACCGGCCTGG
TCGCGGACCTGCGTCCGGGGCCATTGCCCAGTACGCCGATGCGCGCCGTG
CCGCTCGGGGGCGAGCTGTTGTTCGTGGCGACGGGCGCGAGCGGCGCGGT
CGAGTGGCACAAGACCGACGGCGTGACGACGTCTGTCGTCACGCCGATCG
CGCCGCCGGGTCTGAGCGCCTCGATCGGGTCGGAAGTGCTGCAGGGCGGG
CACGTGTTGTTCACCGCGAGCGACGGCGCGACCGGCATCGAGCTCTGGCG
CACCGACGGCACCGCGGCCGGCACGCAACAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127101:122..505-

>mRNA_M-pyrifera_M_contig127101.5461.1 ID=mRNA_M-pyrifera_M_contig127101.5461.1|Name=mRNA_M-pyrifera_M_contig127101.5461.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig127101:122..505- (Macrocystis pyrifera P11B4 male)
CTGACCTCGTTCGGCGGGTCGTTCTACTACCGCGCGTTCGACCCGGACCA
CGGCGTCGAGCTCTGGCGCAGCGCCGGGTCGACCGCTTCGACCGGCCTGG
TCGCGGACCTGCGTCCGGGGCCATTGCCCAGTACGCCGATGCGCGCCGTG
CCGCTCGGGGGCGAGCTGTTGTTCGTGGCGACGGGCGCGAGCGGCGCGGT
CGAGTGGCACAAGACCGACGGCGTGACGACGTCTGTCGTCACGCCGATCG
CGCCGCCGGGTCTGAGCGCCTCGATCGGGTCGGAAGTGCTGCAGGGCGGG
CACGTGTTGTTCACCGCGAGCGACGGCGCGACCGGCATCGAGCTCTGGCG
CACCGACGGCACCGCGGCCGGCACGCAACAGGTGCTGACCTCGTTCGGCG
GGTCGTTCTACTACCGCGCGTTCGACCCGGACCACGGCGTCGAGCTCTGG
CGCAGCGCCGGGTCGACCGCTTCGACCGGCCTGGTCGCGGACCTGCGTCC
GGGGCCATTGCCCAGTACGCCGATGCGCGCCGTGCCGCTCGGGGGCGAGC
TGTTGTTCGTGGCGACGGGCGCGAGCGGCGCGGTCGAGTGGCACAAGACC
GACGGCGTGACGACGTCTGTCGTCACGCCGATCGCGCCGCCGGGTCTGAG
CGCCTCGATCGGGTCGGAAGTGCTGCAGGGCGGGCACGTGTTGTTCACCG
CGAGCGACGGCGCGACCGGCATCGAGCTCTGGCGCACCGACGGCACCGCG
GCCGGCACGCAACAGGTG
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