mRNA_M-pyrifera_M_contig12710.5459.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12710.5459.1
Unique NamemRNA_M-pyrifera_M_contig12710.5459.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: D8LLE4_ECTSI (PRLI-interacting factor L-like (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE4_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.630e-32
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQDRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FM EFL ++SA+LFRSKGVLAF +Q+RK+VFQGVHEQI+CEP+   WA+ G +R SKIVFIGL+LDKD ITE  K C+ PE
Sbjct:    2 FNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQGVHEQIDCEPAINGWAE-GEERVSKIVFIGLDLDKDYITESFKACIVPE 84          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A6H5K110_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K110_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.300e-31
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQDRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FMGEFL ++SA+LFRSKGVLAF +Q+RKYVFQGVHEQI+CEP+   WA+ G +RESKIVFIGL+LD D ITE LK C+ PE
Sbjct:  415 FNKFMGEFLRENSANLFRSKGVLAFKDQERKYVFQGVHEQIDCEPAINGWAE-GEERESKIVFIGLDLDNDYITESLKACIVPE 497          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S3ZMM3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMM3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.880e-22
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQ-DRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAP 249
            FN FM E L   +ADL+RSKGVL+F  Q D+K+VFQGVHEQI+  P+ T W K G  R SKIVFIG NLD+  +TE++++CL P
Sbjct:  259 FNIFMAELLQTRAADLYRSKGVLSFAGQGDQKFVFQGVHEQIDFGPAQTQWQK-GERRVSKIVFIGRNLDRKFLTEKIESCLVP 341          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S4E3I3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3I3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.690e-22
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQ-DRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAP 249
            FN FM E L   +ADL+RSKGVL+F  Q D+K+VFQGVHEQI+  P+ T W K G  R SKIVFIG NLD+  +TE++++CL P
Sbjct:  329 FNIFMAELLQTRAADLYRSKGVLSFAGQGDQKFVFQGVHEQIDFGPAQTQWQK-GERRVSKIVFIGRNLDRKFLTEKIESCLVP 411          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S2K368_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K368_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.390e-20
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQ-DRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FM + L + +ADL+R+KG+L+F  Q + K+VFQGVHEQIN  PS   W ++G +R ++ VFIG NLD+DE+T+ L  CL  E
Sbjct:   21 FNMFMMDLLKERAADLYRTKGLLSFQGQGNSKFVFQGVHEQINFGPSKKPW-EEGEERLNRFVFIGKNLDRDELTKGLMECLYKE 104          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S2RIA0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIA0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.680e-20
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQ-DRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FM + L + +ADL+R+KG+L+F  Q D K+VFQGVHEQIN  P+   W K+G +R +K VFIG NL++DE+T+ L  CL  E
Sbjct:   80 FNMFMMDLLRERAADLYRTKGLLSFHGQGDTKFVFQGVHEQINFGPADKPW-KEGEERINKFVFIGKNLNRDELTKSLMECLYKE 163          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: F0YCQ7_AURAN (CobW C-terminal domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCQ7_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 1.440e-19
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQD-RKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAP 249
            FN FM E L   +ADL+R+KGVL+F  Q  +K+VFQGVHEQI+  P+ T W KD   R SKIVFIG NLD+  + E++++CL P
Sbjct:  264 FNMFMAELLQARAADLYRTKGVLSFAGQGAQKFVFQGVHEQIDFGPAKTEWQKD-EPRWSKIVFIGRNLDRKYLQEKVESCLVP 346          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S4AE36_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AE36_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.540e-19
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQDR-KYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FM + L   +ADL+R+KG+L+F  QD  K+VFQGVHEQIN  P+   W KDG +R +K VFIG NL +DE+T+ L +CL  E
Sbjct:  237 FNMFMMDLLRDRAADLYRTKGLLSFHGQDNVKFVFQGVHEQINFGPAKEGW-KDGEERINKFVFIGKNLSRDELTKSLMDCLYKE 320          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S4EH83_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH83_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-19
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQDR-KYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FM + L   +ADL+R+KG+L+F  QD  K+VFQGVHEQIN  P+   W KDG +R +K VFIG NL +DE+T+ L +CL  E
Sbjct:  257 FNMFMMDLLRDRAADLYRTKGLLSFHGQDNVKFVFQGVHEQINFGPAKEGW-KDGEERINKFVFIGKNLSRDELTKSLMDCLYKE 340          
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Match: A0A7S0AEA3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AEA3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.370e-19
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 FNAFMGEFLGKHSADLFRSKGVLAFTNQ-DRKYVFQGVHEQINCEPSPTVWAKDGSDRESKIVFIGLNLDKDEITERLKNCLAPE 252
            FN FM + L   +ADL+R+KG+L+F  Q D K+VFQGVHEQIN  P+   WA+ G +R +K VFIG NLD+ E+T+ L  C+  E
Sbjct:  120 FNMFMMDLLKDRAADLYRTKGLLSFHGQGDTKFVFQGVHEQINFGPAKNPWAE-GEERINKFVFIGKNLDRKELTKSLMECIYKE 203          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12710.5459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLE4_ECTSI1.630e-3267.86PRLI-interacting factor L-like (ISS) n=1 Tax=Ectoc... [more]
A0A6H5K110_9PHAE3.300e-3171.43CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S3ZMM3_9STRA4.880e-2258.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4E3I3_9STRA9.690e-2258.33Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2K368_9STRA1.390e-2051.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2RIA0_9STRA1.680e-2052.94Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
F0YCQ7_AURAN1.440e-1954.76CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S4AE36_9STRA1.540e-1954.12Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S4EH83_9STRA1.920e-1954.12Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S0AEA3_9STRA3.370e-1951.76Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12710contigM-pyrifera_M_contig12710:3327..4377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog2880.D8LLE4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12710.5459.1prot_M-pyrifera_M_contig12710.5459.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12710 3327..4365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.0360138-CDS-M-pyrifera_M_contig12710:3326..34791622815785.0360138-CDS-M-pyrifera_M_contig12710:3326..3479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12710 3327..3479 -
1692277568.2225647-CDS-M-pyrifera_M_contig12710:3326..34791692277568.2225647-CDS-M-pyrifera_M_contig12710:3326..3479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12710 3327..3479 -
1622815785.0499847-CDS-M-pyrifera_M_contig12710:4272..43651622815785.0499847-CDS-M-pyrifera_M_contig12710:4272..4365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12710 4273..4365 -
1692277568.2339394-CDS-M-pyrifera_M_contig12710:4272..43651692277568.2339394-CDS-M-pyrifera_M_contig12710:4272..4365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12710 4273..4365 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.068151-UTR-M-pyrifera_M_contig12710:4365..43771622815785.068151-UTR-M-pyrifera_M_contig12710:4365..4377Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12710 4366..4377 -
1692277568.246217-UTR-M-pyrifera_M_contig12710:4365..43771692277568.246217-UTR-M-pyrifera_M_contig12710:4365..4377Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12710 4366..4377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12710.5459.1

>prot_M-pyrifera_M_contig12710.5459.1 ID=prot_M-pyrifera_M_contig12710.5459.1|Name=mRNA_M-pyrifera_M_contig12710.5459.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MGEFLGKHSADLFRSKGVLAFTNQDRKYVFQGVHEQINCEPSPTVWAKDG
SDRESKIVFIGLNLDKDEITERLKNCLAPEP*
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mRNA from alignment at M-pyrifera_M_contig12710:3327..4377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12710.5459.1 ID=mRNA_M-pyrifera_M_contig12710.5459.1|Name=mRNA_M-pyrifera_M_contig12710.5459.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1051bp|location=Sequence derived from alignment at M-pyrifera_M_contig12710:3327..4377- (Macrocystis pyrifera P11B4 male)
TTCAACGCTTTCATGGGAGAATTTCTGGGAAAGCACAGCGCCGATTTGTT TCGCTCCAAGGGAGTGCTGGCGTTCACAAACCAGGACCGGAAATACGTCT TTCAGGTGCGGGCCGCGCAAGTGCTGCCGCAAGAGTGTGTGCTGTCGGGA CAAGGTAGTTCCTCCATGTCAAATTTGAAGCAAGGCGCCTGCGGTTTGGC TCGAACACCTTTGGGCAAGAACCTGCCAAGAATTTTCCGCGACGGCGGCA TGCGTGATCGCCGTGATTTGAAGTGGCTTGCTTTAACTAGCATGCGCTTA TTACGTATCGTTTGGTCTACAGCGTCTCTTAGCTCAGTAGCAGGTTTGTG CCCCGGGTTGTCTTTTTATTATCGATATTTTTGCAGTTACAGTATATGTT TGTACCAGGTAGGTGTGTTTTAGGAGGCGGAAACGCTGTGGGTACGTATG CATGAGCGGTCATGCAATCGTGACTCTCCAGCCCCCCCCTTTAACAGTTG GGCTGGGGGGCGGGGGAGTGCGTTGGGTTGTCAAAACTGACGTTATGGTG GTCCCCATACTATAAGGCCTTTATCGTTCTAGTGATTTCAAAGAGGGGAG ACTACATCAAACAGTGCTCCGAGCGCTTGACCTTCCATCTTCCAGTCGAG TCGGAATCAAGAGGGTTGCAGTGTCTCTAATTGCATCCGACAGTCGGCAG ACGTGCAATATCTTTGAAGGGGCTGCCGCGGTGTAGCCAAAAGCGGTCTG ATGGCGACACCATGGACAGAGTGTGTGTGATTGTCTCCCCACCCCTCCCC TCGGTCGCTCCTATCCTGCCCGCGCACGCACGGGCCCCAAAAAACATCGA TCGTGTTTACCCGCTGTTCTACGTTCGGCGTTCATGACTGCTGTGCAGGG TGTGCACGAGCAGATCAACTGCGAGCCGAGCCCCACGGTTTGGGCAAAGG ATGGCAGCGACCGCGAGAGCAAGATAGTCTTTATCGGCCTCAACCTCGAC AAAGACGAGATCACCGAGAGGCTCAAGAACTGCCTGGCCCCAGAGCCGTA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12710:3327..4377-

>mRNA_M-pyrifera_M_contig12710.5459.1 ID=mRNA_M-pyrifera_M_contig12710.5459.1|Name=mRNA_M-pyrifera_M_contig12710.5459.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig12710:3327..4377- (Macrocystis pyrifera P11B4 male)
ATGGGAGAATTTCTGGGAAAGCACAGCGCCGATTTGTTTCGCTCCAAGGG
AGTGCTGGCGTTCACAAACCAGGACCGGAAATACGTCTTTCAGATGGGAG
AATTTCTGGGAAAGCACAGCGCCGATTTGTTTCGCTCCAAGGGAGTGCTG
GCGTTCACAAACCAGGACCGGAAATACGTCTTTCAGGGTGTGCACGAGCA
GATCAACTGCGAGCCGAGCCCCACGGTTTGGGCAAAGGATGGCAGCGACC
GCGAGAGCAAGATAGTCTTTATCGGCCTCAACCTCGACAAAGACGAGATC
ACCGAGAGGCTCAAGAACTGCCTGGCCCCAGAGCCGTAAGGTGTGCACGA
GCAGATCAACTGCGAGCCGAGCCCCACGGTTTGGGCAAAGGATGGCAGCG
ACCGCGAGAGCAAGATAGTCTTTATCGGCCTCAACCTCGACAAAGACGAG
ATCACCGAGAGGCTCAAGAACTGCCTGGCCCCAGAGCCGTAA
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