mRNA_M-pyrifera_M_contig127093.5453.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127093.5453.1
Unique NamemRNA_M-pyrifera_M_contig127093.5453.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A7S3ZB25_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZB25_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 1.560e-15
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTP 159
            RA I+ +DS ERF +LG DVFLG GKFT  +T+EVNG+TLRF RA+VATGG+P
Sbjct:  286 RAGIAHHDSAERFTSLGVDVFLGHGKFTSRNTVEVNGKTLRFHRAVVATGGSP 338
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A7S1X6K0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6K0_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 9.990e-15
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTP 159
            RA IS  DS  R+  LG DVF GRGKFT   T+EVNG+TL+F  A++ATGGTP
Sbjct:   51 RAKISPVDSASRYSELGVDVFQGRGKFTSKDTIEVNGKTLKFATAVIATGGTP 103
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A7S1TG05_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TG05_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 RADISANDSVERF-EALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTP 159
            RADI+ NDS ERF + LG DVFLGRG+FT  +T+EVNGQTL F  A++ATGG+P
Sbjct:  374 RADIADNDSAERFSKKLGIDVFLGRGRFTSRNTVEVNGQTLEFAHAVIATGGSP 427
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A355EZ64_9BACT (FAD-containing oxidoreductase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A355EZ64_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.570e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTPG 162
            RA IS +DS  RF +LG DVFLG G+FTG  T+EV G+TLRFRRA++ATGG  G
Sbjct:  124 RAGISVHDSFARFRSLGVDVFLGDGRFTGPDTVEVGGKTLRFRRAVIATGGRAG 177
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A7C4QT76_9BACT (Mercuric reductase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C4QT76_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 2.570e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATG 150
            RADIS +DS +RF  LG DVFLG GKFTG+ T+EV GQTLRF +A++ATG
Sbjct:  125 RADISPHDSAKRFSELGVDVFLGAGKFTGSDTIEVGGQTLRFAKAVIATG 174
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A7S4E0S5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E0S5_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 3.540e-14
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTP 159
            R+ I+ +DS +RF  LG DVFLG GKFT  +T+EVNG+TL+F RA++ATGG+P
Sbjct:  277 RSSIAHHDSAQRFAELGVDVFLGHGKFTSKNTIEVNGKTLKFHRAVIATGGSP 329
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: A0A3M1IV65_9CHLR (FAD-containing oxidoreductase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1IV65_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 3.550e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTP 159
            RA +S++DS  RF  LG DV+LG G+FTG  TLEV GQTLRF++A++ATG  P
Sbjct:  124 RAGLSSHDSAARFRELGIDVYLGEGRFTGPGTLEVGGQTLRFKKAVIATGARP 176
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: B7ZGN8_9PHAE (Mercuric reductase A (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.970e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGT 156
            RA IS NDS ERF  LG DV++G GKFT   T++VNG+TL+F+RA+VATGG+
Sbjct:   12 RAGISHNDSAERFTKLGIDVYIGHGKFTSPSTIQVNGKTLKFKRAVVATGGS 63
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: UPI0019F9CE62 (Mercuric reductase n=1 Tax=Gloeomargaritaceae cyanobacterium C42_A2020_066 TaxID=2747801 RepID=UPI0019F9CE62)

HSP 1 Score: 73.2 bits (178), Expect = 8.950e-14
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATGGTP 159
            RAD+S  DS  RF++LG DVFLG G+FTG  T+EV GQTL F+RA++ATG  P
Sbjct:  116 RADLSHQDSAARFQSLGMDVFLGAGRFTGPRTIEVAGQTLPFKRAVIATGSRP 168
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BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Match: UPI001685D37F (mercuric reductase n=1 Tax=Leptolyngbya sp. FACHB-261 TaxID=2692806 RepID=UPI001685D37F)

HSP 1 Score: 73.2 bits (178), Expect = 8.980e-14
Identity = 32/50 (64.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATG 150
            RA IS +DSV+RF+ LG DVFLG+G F+GA+T+EV G+TLRF++A++ATG
Sbjct:  127 RASISPHDSVQRFQKLGVDVFLGKGHFSGANTVEVAGETLRFKKAVIATG 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127093.5453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ZB25_9EUKA1.560e-1567.92Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S1X6K0_9CHLO9.990e-1562.26Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S1TG05_9RHOD1.390e-1466.67Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A355EZ64_9BACT2.570e-1464.81FAD-containing oxidoreductase n=1 Tax=Acidobacteri... [more]
A0A7C4QT76_9BACT2.570e-1468.00Mercuric reductase n=1 Tax=Verrucomicrobia subdivi... [more]
A0A7S4E0S5_9EUKA3.540e-1460.38Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A3M1IV65_9CHLR3.550e-1460.38FAD-containing oxidoreductase (Fragment) n=1 Tax=C... [more]
B7ZGN8_9PHAE5.970e-1463.46Mercuric reductase A (Fragment) n=1 Tax=Laminaria ... [more]
UPI0019F9CE628.950e-1462.26Mercuric reductase n=1 Tax=Gloeomargaritaceae cyan... [more]
UPI001685D37F8.980e-1464.00mercuric reductase n=1 Tax=Leptolyngbya sp. FACHB-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127093contigM-pyrifera_M_contig127093:9..173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue7.4e-11
Seed eggNOG ortholog63737.Npun_R3470
Preferred namemerA
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
EggNOG OGs1G198@1117,1HKQ5@1161,COG1249@1,COG1249@2
COG Functional cat.C
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.6111848-CDS-M-pyrifera_M_contig127093:8..1731622815784.6111848-CDS-M-pyrifera_M_contig127093:8..173Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127093 9..173 +
1692277567.9802947-CDS-M-pyrifera_M_contig127093:8..1731692277567.9802947-CDS-M-pyrifera_M_contig127093:8..173Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127093 9..173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127093.5453.1prot_M-pyrifera_M_contig127093.5453.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127093 9..173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127093.5453.1

>prot_M-pyrifera_M_contig127093.5453.1 ID=prot_M-pyrifera_M_contig127093.5453.1|Name=mRNA_M-pyrifera_M_contig127093.5453.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
RADISANDSVERFEALGADVFLGRGKFTGAHTLEVNGQTLRFRRAIVATG
GTPG*
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mRNA from alignment at M-pyrifera_M_contig127093:9..173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127093.5453.1 ID=mRNA_M-pyrifera_M_contig127093.5453.1|Name=mRNA_M-pyrifera_M_contig127093.5453.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig127093:9..173+ (Macrocystis pyrifera P11B4 male)
CGAGCTGATATTAGTGCAAACGACTCAGTTGAGCGCTTTGAAGCCCTTGG
CGCCGATGTGTTTCTTGGCCGTGGCAAGTTTACGGGAGCACACACCCTGG
AAGTCAACGGGCAGACGCTGCGCTTCCGTCGGGCAATCGTCGCGACTGGC
GGTACTCCAGGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127093:9..173+

>mRNA_M-pyrifera_M_contig127093.5453.1 ID=mRNA_M-pyrifera_M_contig127093.5453.1|Name=mRNA_M-pyrifera_M_contig127093.5453.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig127093:9..173+ (Macrocystis pyrifera P11B4 male)
CGAGCTGATATTAGTGCAAACGACTCAGTTGAGCGCTTTGAAGCCCTTGG
CGCCGATGTGTTTCTTGGCCGTGGCAAGTTTACGGGAGCACACACCCTGG
AAGTCAACGGGCAGACGCTGCGCTTCCGTCGGGCAATCGTCGCGACTGGC
GGTACTCCAGGTTAGCGAGCTGATATTAGTGCAAACGACTCAGTTGAGCG
CTTTGAAGCCCTTGGCGCCGATGTGTTTCTTGGCCGTGGCAAGTTTACGG
GAGCACACACCCTGGAAGTCAACGGGCAGACGCTGCGCTTCCGTCGGGCA
ATCGTCGCGACTGGCGGTACTCCAGGTTAG
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