mRNA_M-pyrifera_M_contig127092.5452.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127092.5452.1
Unique NamemRNA_M-pyrifera_M_contig127092.5452.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: UPI001884F686 (cotranscriptional regulator FAM172A homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884F686)

HSP 1 Score: 63.2 bits (152), Expect = 1.050e-9
Identity = 34/97 (35.05%), Postives = 47/97 (48.45%), Query Frame = 1
Query:   16 VLVSADWLSDRDRLVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPNARW----------VAADAPVRHVVSFWDTFLRPA 276
            V  S  +      L+LVHGSG +  G W+R   +  GLQ GT LPY +R    G+ V +LN N               +  P  H ++ WDT++RPA
Sbjct:   90 VFASPGYADAARLLLLVHGSGVVRAGQWTRRLIINNGLQEGTQLPYIKRALAAGYGVLVLNTNDNHRVQNKQKQLIPGSGRPEEHALTVWDTYVRPA 186          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: UPI00071189BE (protein kinase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071189BE)

HSP 1 Score: 63.2 bits (152), Expect = 1.300e-9
Identity = 33/85 (38.82%), Postives = 44/85 (51.76%), Query Frame = 1
Query:   49 DRLVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPNARWVA---------------ADAPVRHVVSFWD 258
            D L+L+  S    PG+WSRS CVE GLQ G+MLP+  +  QLG  V + NPN   V                ++ P +HV+  WD
Sbjct:   36 DNLLLIIPSSGTMPGIWSRSLCVEKGLQVGSMLPFFVKAIQLGIGVIVFNPNVNNVRVPSPQGGYVKRSIPHSETPDQHVIYVWD 120          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: A0A1B0GIA4_LUTLO (Arb2 domain-containing protein n=2 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A1B0GIA4_LUTLO)

HSP 1 Score: 60.8 bits (146), Expect = 7.260e-9
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   25 SADWLSDRDRLVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPN--------ARWVAADAPVRHVVSFWDTFLRPA 276
            S ++L+    LVL+HGSG +  G WSRS  +   + AGT LPY E+ R +GF V   N N         R+  ++  V H +  W+ ++ P+
Sbjct:   99 SKEFLNAEKLLVLIHGSGVVRAGQWSRSLIINHSIAAGTQLPYIEKARNMGFEVISTNTNDNHRDGKSIRY--SEDSVEHAIYVWEKYIMPS 188          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: A0A131YVS0_RHIAP (GPI inositol-deacylase n=7 Tax=Rhipicephalinae TaxID=426437 RepID=A0A131YVS0_RHIAP)

HSP 1 Score: 59.3 bits (142), Expect = 2.860e-8
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    7 STPVLVSADWLSDRDRL-VLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPN 204
            S+ + VS D  +++DRL +L+HGSG +  G WSR   V   L+ GT LPY  R + LG++V +LN N
Sbjct:  117 SSFIFVSEDAFTNKDRLLILIHGSGVVRAGQWSRRLIVNDSLKKGTQLPYIRRAQGLGYAVIVLNTN 183          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: UPI001E675273 (cotranscriptional regulator FAM172A-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E675273)

HSP 1 Score: 59.3 bits (142), Expect = 3.090e-8
Identity = 29/100 (29.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    7 STPVLVSADWLSDRDR-LVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPN-----------ARWVAADAPVRHVVSFWDTFLR 270
            ST + +S D +S+ ++ LVL+HGSG +  G WSR   +   L +GT +P+ ++ ++ G+ + ++N N           +R   ++ P  H +  WD ++R
Sbjct:   93 STFIFISEDAMSNPEKILVLIHGSGVVRAGQWSRRLIINDSLDSGTQIPFIKKAQEEGYGIIVMNTNDNYRTNRKKNRSRIRGSENPDNHALHVWDNYIR 192          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: A0A196SKH2_BLAHN (Protein kinase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKH2_BLAHN)

HSP 1 Score: 59.3 bits (142), Expect = 3.220e-8
Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    4 ASTPVLVSADWLSDRDRLVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPN--------ARWVAADAPV-------RHVVSFWDTFLRPA 276
            A + +  +   LS  + LV++  +G +P G+WSR+ C+E GLQ GTMLP+  +   +G  V +LNPN        ++ V++  P+        HV+  WD  +  A
Sbjct:   81 ARSSIFATKGCLSADNLLVIIPSAGTMP-GLWSRTLCIEKGLQIGTMLPFFIKAINMGLGVIVLNPNVNSAKVMTSQGVSSRVPIPHNETPDMHVLYIWDRIISRA 185          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: A0A2G9T452_TELCI (Uncharacterized protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9T452_TELCI)

HSP 1 Score: 55.8 bits (133), Expect = 6.670e-8
Identity = 23/75 (30.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   55 LVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPNARWVAADAPVRHVVSFWDTFLRPAP 279
            ++++HGSG + PG WSR   +   L+ G+ +PY +R  + G+ V + + N      D P RH+ + ++  L+ +P
Sbjct:   30 VLIIHGSGAVRPGQWSRRLILNESLETGSQIPYIQRATKNGWGVIVCSTNTDEEVQDYPRRHICAVYEQLLKDSP 104          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: A0A2R5LD69_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LD69_9ACAR)

HSP 1 Score: 58.2 bits (139), Expect = 7.340e-8
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1
Query:    7 STPVLVSADWLSDRDRL-VLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPNARWVA----------ADAPVRHVVSFWDTFL 267
            ST +  S D L++R++L VL+HGSG +  G WSR   V   L+ GT LP+  R   LG+ V +LN N  +            ++ P +H    W+ F+
Sbjct:  103 STFIFASDDALTNRNKLLVLIHGSGTVRAGQWSRRLIVNDSLKKGTQLPFIRRALGLGYGVIVLNTNDNFRMHGEVKRAIRESETPEKHAGYVWEWFI 200          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: A0A293LNW8_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LNW8_ORNER)

HSP 1 Score: 58.2 bits (139), Expect = 7.420e-8
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1
Query:    7 STPVLVSADWLSDRDRL-VLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPNARWVA----------ADAPVRHVVSFWDTFL 267
            ST +  S D L++R++L VL+HGSG +  G WSR   V   L+ GT LP+  R   LG+ V +LN N  +            ++ P +H    W+ F+
Sbjct:  111 STFIFASDDALTNRNKLLVLIHGSGTVRAGQWSRRLIVNDSLKKGTQLPFIRRALGLGYGVIVLNTNDNFRMCGDVRRAIRDSETPEKHARYVWEWFI 208          
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Match: UPI0012D3E522 (FAM172 family protein homolog CG10038 isoform X1 n=3 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D3E522)

HSP 1 Score: 58.2 bits (139), Expect = 7.850e-8
Identity = 27/81 (33.33%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   31 DWLSDRDRLVLVHGSGHLPPGVWSRSACVELGLQAGTMLPYAERGRQLGFSVAILNPNARWVAADAPVRHVVSFWDTFLRP 273
            D+ + +  L L+HGSG +  G WSRS  +   +  GT LPY +R   LG+ V + N N     +  P  H+++ W+  + P
Sbjct:  146 DFKNTKKLLFLIHGSGVVRAGQWSRSLIINQSINHGTQLPYIKRAISLGYDVLVTNTNQNENLS--PEEHIITVWEQLIAP 224          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127092.5452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001884F6861.050e-935.05cotranscriptional regulator FAM172A homolog n=1 Ta... [more]
UPI00071189BE1.300e-938.82protein kinase n=1 Tax=Blastocystis sp. subtype 4 ... [more]
A0A1B0GIA4_LUTLO7.260e-934.78Arb2 domain-containing protein n=2 Tax=Lutzomyia l... [more]
A0A131YVS0_RHIAP2.860e-844.78GPI inositol-deacylase n=7 Tax=Rhipicephalinae Tax... [more]
UPI001E6752733.090e-829.00cotranscriptional regulator FAM172A-like isoform X... [more]
A0A196SKH2_BLAHN3.220e-832.08Protein kinase n=1 Tax=Blastocystis sp. subtype 1 ... [more]
A0A2G9T452_TELCI6.670e-830.67Uncharacterized protein (Fragment) n=1 Tax=Telador... [more]
A0A2R5LD69_9ACAR7.340e-834.69Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
A0A293LNW8_ORNER7.420e-834.69Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
UPI0012D3E5227.850e-833.33FAM172 family protein homolog CG10038 isoform X1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127092contigM-pyrifera_M_contig127092:23..301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog36331.EPrPI00000023785
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein kinase. Source PGD
EggNOG OGs1MAUJ@121069,KOG3967@1,KOG3967@2759
EC2.7.11.1
COG Functional cat.H
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.5751476-CDS-M-pyrifera_M_contig127092:22..3011622815784.5751476-CDS-M-pyrifera_M_contig127092:22..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127092 23..301 -
1692277567.9665754-CDS-M-pyrifera_M_contig127092:22..3011692277567.9665754-CDS-M-pyrifera_M_contig127092:22..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127092 23..301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127092.5452.1prot_M-pyrifera_M_contig127092.5452.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127092 23..301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127092.5452.1

>prot_M-pyrifera_M_contig127092.5452.1 ID=prot_M-pyrifera_M_contig127092.5452.1|Name=mRNA_M-pyrifera_M_contig127092.5452.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
RASTPVLVSADWLSDRDRLVLVHGSGHLPPGVWSRSACVELGLQAGTMLP
YAERGRQLGFSVAILNPNARWVAADAPVRHVVSFWDTFLRPAP
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mRNA from alignment at M-pyrifera_M_contig127092:23..301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127092.5452.1 ID=mRNA_M-pyrifera_M_contig127092.5452.1|Name=mRNA_M-pyrifera_M_contig127092.5452.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig127092:23..301- (Macrocystis pyrifera P11B4 male)
CGTGCCTCCACACCCGTCCTCGTCTCCGCCGACTGGCTCTCCGACCGCGA CCGGCTGGTGCTCGTCCACGGCTCCGGCCACCTCCCCCCGGGCGTCTGGT CCCGCTCCGCCTGCGTCGAGCTCGGCCTGCAGGCCGGCACCATGCTGCCC TACGCCGAGCGTGGCCGCCAGCTGGGCTTCTCCGTGGCCATCCTCAACCC CAACGCCCGCTGGGTGGCGGCCGACGCGCCGGTTCGCCACGTGGTGTCTT TCTGGGACACCTTCCTCCGCCCCGCGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127092:23..301-

>mRNA_M-pyrifera_M_contig127092.5452.1 ID=mRNA_M-pyrifera_M_contig127092.5452.1|Name=mRNA_M-pyrifera_M_contig127092.5452.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig127092:23..301- (Macrocystis pyrifera P11B4 male)
CGTGCCTCCACACCCGTCCTCGTCTCCGCCGACTGGCTCTCCGACCGCGA
CCGGCTGGTGCTCGTCCACGGCTCCGGCCACCTCCCCCCGGGCGTCTGGT
CCCGCTCCGCCTGCGTCGAGCTCGGCCTGCAGGCCGGCACCATGCTGCCC
TACGCCGAGCGTGGCCGCCAGCTGGGCTTCTCCGTGGCCATCCTCAACCC
CAACGCCCGCTGGGTGGCGGCCGACGCGCCGGTTCGCCACGTGGTGTCTT
TCTGGGACACCTTCCTCCGCCCCGCGCCCCGTGCCTCCACACCCGTCCTC
GTCTCCGCCGACTGGCTCTCCGACCGCGACCGGCTGGTGCTCGTCCACGG
CTCCGGCCACCTCCCCCCGGGCGTCTGGTCCCGCTCCGCCTGCGTCGAGC
TCGGCCTGCAGGCCGGCACCATGCTGCCCTACGCCGAGCGTGGCCGCCAG
CTGGGCTTCTCCGTGGCCATCCTCAACCCCAACGCCCGCTGGGTGGCGGC
CGACGCGCCGGTTCGCCACGTGGTGTCTTTCTGGGACACCTTCCTCCGCC
CCGCGCCC
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