mRNA_M-pyrifera_M_contig127084.5451.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127084.5451.1
Unique NamemRNA_M-pyrifera_M_contig127084.5451.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127084.5451.1 vs. uniprot
Match: UPI000BA80E87 (protein DGCR14-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA80E87)

HSP 1 Score: 58.9 bits (141), Expect = 3.070e-7
Identity = 49/148 (33.11%), Postives = 74/148 (50.00%), Query Frame = 1 
Query:   13 SPRVNGYCFVCPPEPCEDDVEERLAGWGDVASTP-------VPMPRVSAADRAGAAYRIPATPTRDKVALELAEKSGRRAKGARAASRRIAASSVRYERSPYTPAFATPRASATPLSPAAARLLSIRSKRATPGGSGLGDIGLRASYS 435
            SP+VNGY FV  P P     E  L  WG++  TP        P+P+ S     G  ++IP  P+R+K+A+ LA+++ +  +  +  + +   SS+ +     T +  TP    + +SPAA  L   RSK     GS   D  LRASY+
Sbjct:  410 SPKVNGYGFVATPSPAPGVAESPLMTWGEIEGTPFRLDGSDTPLPQSSG----GPQFKIPDLPSREKLAISLADQAAKNQRAKKEQALKRVQSSLLHPSRCGTGSPKTPTDRLSSMSPAAQLL--ARSKLGIHRGS---DRALRASYT 548
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BLAST of mRNA_M-pyrifera_M_contig127084.5451.1 vs. uniprot
Match: A0A6B2L4D3_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4D3_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 2.090e-5
Identity = 54/162 (33.33%), Postives = 74/162 (45.68%), Query Frame = 1 
Query:    4 EGGSPRVNGYCFVCPPEPCEDDVEERLAGWGDVASTPVPMPRVSAADRAGAAYRIPATPTRDKVALELAEKSGRRAKGARAASRRIAASSVRYERSPYTPAFATPRASATPLSPAAARLLSIRSKRATPGGSGLGDIGLRASY----------SAKTPVRTP 459
            E   P +NG+ FV  P        E +  WG++  TP+ +    + D  GA +++P TP RD++ ++L EKS  R    R  SR  A +         TP  A+ R   +P SPA  +L  + S R   G     D  LRASY          SAKTP  TP
Sbjct:  249 ETEQPTINGFDFVTDPSSTPSK-HEPIVTWGEIVGTPILLH--PSGD--GAGFKVPMTPKRDQICIDLVEKSKARQ---RQMSRPSAVA---------TPGGASSRDPLSPRSPAGQKLADLLSSR---GSQRNVDRQLRASYASPSPRPSTPSAKTPGTTP 390
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127084.5451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000BA80E873.070e-733.11protein DGCR14-like n=1 Tax=Limulus polyphemus Tax... [more]
A0A6B2L4D3_9EUKA2.090e-533.33Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127084contigM-pyrifera_M_contig127084:14..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.5397623-CDS-M-pyrifera_M_contig127084:13..4751622815784.5397623-CDS-M-pyrifera_M_contig127084:13..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127084 14..475 -
1692277567.9522789-CDS-M-pyrifera_M_contig127084:13..4751692277567.9522789-CDS-M-pyrifera_M_contig127084:13..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127084 14..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127084.5451.1prot_M-pyrifera_M_contig127084.5451.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127084 14..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127084.5451.1

>prot_M-pyrifera_M_contig127084.5451.1 ID=prot_M-pyrifera_M_contig127084.5451.1|Name=mRNA_M-pyrifera_M_contig127084.5451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
SEGGSPRVNGYCFVCPPEPCEDDVEERLAGWGDVASTPVPMPRVSAADRA
GAAYRIPATPTRDKVALELAEKSGRRAKGARAASRRIAASSVRYERSPYT
PAFATPRASATPLSPAAARLLSIRSKRATPGGSGLGDIGLRASYSAKTPV
RTPP
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mRNA from alignment at M-pyrifera_M_contig127084:14..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127084.5451.1 ID=mRNA_M-pyrifera_M_contig127084.5451.1|Name=mRNA_M-pyrifera_M_contig127084.5451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig127084:14..475- (Macrocystis pyrifera P11B4 male)
TCCGAGGGCGGCAGCCCGCGCGTGAACGGCTATTGCTTCGTCTGTCCTCC
CGAGCCGTGTGAAGACGATGTGGAGGAGAGGTTGGCGGGCTGGGGGGACG
TCGCCTCGACGCCAGTGCCAATGCCGCGCGTGTCCGCCGCCGACCGTGCA
GGCGCCGCGTACCGCATTCCCGCCACGCCCACGCGCGACAAAGTTGCCCT
GGAGCTGGCGGAGAAGAGCGGCAGGCGGGCGAAGGGCGCTAGGGCCGCGA
GCCGCCGCATTGCCGCCTCCAGCGTGCGCTACGAGCGCTCGCCCTACACT
CCCGCCTTCGCCACGCCACGCGCCTCCGCCACCCCCCTCTCACCCGCTGC
CGCACGCCTGCTCAGCATCAGGAGCAAGCGCGCGACGCCTGGTGGCAGTG
GCCTGGGCGACATCGGCCTGCGTGCGTCCTACTCGGCCAAGACCCCCGTG
CGCACGCCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127084:14..475-

>mRNA_M-pyrifera_M_contig127084.5451.1 ID=mRNA_M-pyrifera_M_contig127084.5451.1|Name=mRNA_M-pyrifera_M_contig127084.5451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig127084:14..475- (Macrocystis pyrifera P11B4 male)
TCCGAGGGCGGCAGCCCGCGCGTGAACGGCTATTGCTTCGTCTGTCCTCC
CGAGCCGTGTGAAGACGATGTGGAGGAGAGGTTGGCGGGCTGGGGGGACG
TCGCCTCGACGCCAGTGCCAATGCCGCGCGTGTCCGCCGCCGACCGTGCA
GGCGCCGCGTACCGCATTCCCGCCACGCCCACGCGCGACAAAGTTGCCCT
GGAGCTGGCGGAGAAGAGCGGCAGGCGGGCGAAGGGCGCTAGGGCCGCGA
GCCGCCGCATTGCCGCCTCCAGCGTGCGCTACGAGCGCTCGCCCTACACT
CCCGCCTTCGCCACGCCACGCGCCTCCGCCACCCCCCTCTCACCCGCTGC
CGCACGCCTGCTCAGCATCAGGAGCAAGCGCGCGACGCCTGGTGGCAGTG
GCCTGGGCGACATCGGCCTGCGTGCGTCCTACTCGGCCAAGACCCCCGTG
CGCACGCCTCCTTCCGAGGGCGGCAGCCCGCGCGTGAACGGCTATTGCTT
CGTCTGTCCTCCCGAGCCGTGTGAAGACGATGTGGAGGAGAGGTTGGCGG
GCTGGGGGGACGTCGCCTCGACGCCAGTGCCAATGCCGCGCGTGTCCGCC
GCCGACCGTGCAGGCGCCGCGTACCGCATTCCCGCCACGCCCACGCGCGA
CAAAGTTGCCCTGGAGCTGGCGGAGAAGAGCGGCAGGCGGGCGAAGGGCG
CTAGGGCCGCGAGCCGCCGCATTGCCGCCTCCAGCGTGCGCTACGAGCGC
TCGCCCTACACTCCCGCCTTCGCCACGCCACGCGCCTCCGCCACCCCCCT
CTCACCCGCTGCCGCACGCCTGCTCAGCATCAGGAGCAAGCGCGCGACGC
CTGGTGGCAGTGGCCTGGGCGACATCGGCCTGCGTGCGTCCTACTCGGCC
AAGACCCCCGTGCGCACGCCTCCT
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