mRNA_M-pyrifera_M_contig127064.5445.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127064.5445.1
Unique NamemRNA_M-pyrifera_M_contig127064.5445.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A4X2LHD2_VOMUR (DNA repair protein n=2 Tax=Vombatus ursinus TaxID=29139 RepID=A0A4X2LHD2_VOMUR)

HSP 1 Score: 70.1 bits (170), Expect = 9.680e-12
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 363
            + E L    AIL+TG A++D ++D G++ G VTE+ GPP SGK+Q+C+  AA  A S G +V Y+D++  L+  RLL   +          +D   +A  L+ +H VR F +
Sbjct:   71 LYEELKTSTAILATGIASLDKLLDSGLYTGEVTEITGPPASGKTQVCLCTAASVAYSLGQSVLYIDSTGGLTASRLLQLLQ-------ARTEDEEEQAGALQRIHVVRVFDI 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A8C5LTF9_9ANUR (RECA_2 domain-containing protein n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5LTF9_9ANUR)

HSP 1 Score: 68.2 bits (165), Expect = 5.430e-11
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVSG------GTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRAL 339
            ++E+   +G I+ T  +A+D ++ GG+H   VTE+CGPPG GK+QLCM++A +  + G      G V Y+DT +S  VERL+      V + C  +  + +  E ++A+
Sbjct:   74 LLEQEQAQGFII-TFCSAVDDLLGGGIHLNKVTEICGPPGVGKTQLCMQLAVDVQIPGCFGGVAGEVVYIDTENSFLVERLVDIANACV-EHCELITQSNQEDEHIKAM 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001470E27A (DNA repair protein RAD51 homolog 4 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001470E27A)

HSP 1 Score: 67.8 bits (164), Expect = 6.570e-11
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 363
            + E L    AI+STG+ ++D ++D GV+ G +TELCG P SGK+Q+C+ VAA  +     +V Y+DT+  LS  RLL      +  +  + D      E ++AL R+  F++
Sbjct:   71 LYEELLSSTAIISTGNPSLDQLLDSGVYTGEITELCGSPASGKTQVCLGVAAHVSHQLKQSVIYVDTTGGLSASRLLQM----LHAETSNTD------EQMQALQRIHVFQI 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001A99D27B (DNA repair protein RAD51 homolog 4 isoform X3 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=UPI001A99D27B)

HSP 1 Score: 67.0 bits (162), Expect = 9.710e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 363
            + E L    AILSTG+ ++D ++D G++ G +TEL G PGSGKSQ+C RVA   +     +V Y+DT+  L+  RLL   +           + +   E + AL R+  FR+
Sbjct:   71 LYEELLSSTAILSTGNPSLDKLLDSGLYTGEITELSGGPGSGKSQVCFRVAVHISYQLKQSVIYIDTTGGLTAGRLLQMLQA----------ETSNTEEQMEALQRIHIFRL 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001CFEE07A (DNA repair protein RAD51 homolog 4 n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFEE07A)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-10
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 363
            + E L    AILSTG A +D ++D G++ G VTE+ G P SGK+Q+C+  +A  A S G  V Y+D++  L+  RLL   +          +D   +A  L+++H VR F +
Sbjct:   45 LYEELKTSTAILSTGMARLDKLLDSGLYTGEVTEITGAPASGKTQVCLCASAHVAHSLGQDVLYIDSTGGLTASRLLQLLQ-------ARTEDEEEQARALQSIHVVRVFDI 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: UPI001A987BDC (DNA repair protein RAD51 homolog 4 isoform X2 n=1 Tax=Xiphias gladius TaxID=8245 RepID=UPI001A987BDC)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-10
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 363
            + E L    AILSTG+ ++D ++D G++ G +TEL G PGSGKSQ+C RVA   +     +V Y+DT+  L+  RLL   +           + +   E + AL R+  FR+
Sbjct:   71 LYEELLSSTAILSTGNPSLDKLLDSGLYTGEITELSGGPGSGKSQVCFRVAVHISYQLKQSVIYIDTTGGLTAGRLLQMLQA----------ETSNTEEQMEALQRIHIFRL 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A8C4S124_ERPCA (DNA repair protein RAD51 homolog 4-like n=3 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4S124_ERPCA)

HSP 1 Score: 65.5 bits (158), Expect = 1.430e-10
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAV 279
            + + L    AILSTG+ ++D ++D G++ G VTEL G PGSGK+Q+C+ VAA  A      V Y+D++  LS  RLL   +  V
Sbjct:   50 LYDELLSSTAILSTGNESLDKLLDSGLYTGEVTELIGSPGSGKTQVCLGVAANVACELKRNVVYIDSTGGLSASRLLEIVKSKV 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A0U5CZN5_9EURY (DNA repair and recombination protein RadB n=6 Tax=Halobacteriaceae TaxID=2236 RepID=A0A0U5CZN5_9EURY)

HSP 1 Score: 65.5 bits (158), Expect = 2.170e-10
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:   64 LSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVSGGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAEL 327
            +STG AA+D ++ GGV  G VT++ GPP +GK+ + +  A E A SGGT  Y+DT   LSVER     +  ++ +  D +DA+ R  L
Sbjct:    7 ISTGCAALDDLLGGGVERGTVTQVYGPPAAGKTNVALSTAVEVAASGGTAVYIDTEG-LSVERF----DQLLQARADDPEDASSRIVL 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: A0A8J9YPE6_BRALA (RAD51D protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YPE6_BRALA)

HSP 1 Score: 66.2 bits (160), Expect = 2.330e-10
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   58 AILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETAVS-GGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDA 309
            AILSTG++ +D M+DGG++ GA+TEL G PGSGK+Q+CM VA   A      V Y+DT+ + S  RL    +  ++   GD + A
Sbjct:   80 AILSTGNSRLDDMLDGGIYTGALTELMGAPGSGKTQICMSVAIHVASRLEQNVLYVDTTGACSGRRL----QEMLQNSAGDKESA 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Match: G3QCE3_GASAC (RAD51 paralog D n=3 Tax=Gasterosteidae TaxID=69291 RepID=G3QCE3_GASAC)

HSP 1 Score: 66.2 bits (160), Expect = 2.360e-10
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:   31 IIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKSQLCMRVAAETA--VSGGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDATRRAELLRALHRVRHFRV 363
            + E L    AI+STG+  +D ++D G++ G +TELCG P SGKSQ+C  VA   +  +  G V ++DT+  LS  RLL      +R +   V+      E + AL RVR FR+
Sbjct:   71 LYEELLSSTAIVSTGNPGLDKLLDSGLYTGEITELCGGPASGKSQVCFGVAVHVSCRLKQGVV-FIDTTGGLSAGRLLQM----LRAETSGVE------EQMEALQRVRVFRL 172
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127064.5445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4X2LHD2_VOMUR9.680e-1237.50DNA repair protein n=2 Tax=Vombatus ursinus TaxID=... [more]
A0A8C5LTF9_9ANUR5.430e-1135.78RECA_2 domain-containing protein n=1 Tax=Leptobrac... [more]
UPI001470E27A6.570e-1136.61DNA repair protein RAD51 homolog 4 n=1 Tax=Thalass... [more]
UPI001A99D27B9.710e-1136.61DNA repair protein RAD51 homolog 4 isoform X3 n=3 ... [more]
UPI001CFEE07A1.010e-1036.61DNA repair protein RAD51 homolog 4 n=1 Tax=Gracili... [more]
UPI001A987BDC1.220e-1036.61DNA repair protein RAD51 homolog 4 isoform X2 n=1 ... [more]
A0A8C4S124_ERPCA1.430e-1042.86DNA repair protein RAD51 homolog 4-like n=3 Tax=Er... [more]
A0A0U5CZN5_9EURY2.170e-1042.05DNA repair and recombination protein RadB n=6 Tax=... [more]
A0A8J9YPE6_BRALA2.330e-1044.71RAD51D protein n=2 Tax=Branchiostoma lanceolatum T... [more]
G3QCE3_GASAC2.360e-1038.94RAD51 paralog D n=3 Tax=Gasterosteidae TaxID=69291... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127064contigM-pyrifera_M_contig127064:137..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.7
Seed ortholog evalue1e-09
Seed eggNOG ortholog7918.ENSLOCP00000002376
Preferred nameRAD51D
KEGG koko:K10871
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008092,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0036297,GO:0042148,GO:0042592,GO:0042623,GO:0043015,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0098687,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.RAD51 homolog D (S. cerevisiae)
EggNOG OGs38BWA@33154,3BEBD@33208,3D2WE@33213,47ZN3@7711,494F4@7742,4A20D@7898,COG0468@1,KOG1433@2759
COG Functional cat.L
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size363
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.2683778-UTR-M-pyrifera_M_contig127064:136..1481622815784.2683778-UTR-M-pyrifera_M_contig127064:136..148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127064 137..148 +
1692277567.8258276-UTR-M-pyrifera_M_contig127064:136..1481692277567.8258276-UTR-M-pyrifera_M_contig127064:136..148Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127064 137..148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.2780244-CDS-M-pyrifera_M_contig127064:148..4991622815784.2780244-CDS-M-pyrifera_M_contig127064:148..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127064 149..499 +
1692277567.8366466-CDS-M-pyrifera_M_contig127064:148..4991692277567.8366466-CDS-M-pyrifera_M_contig127064:148..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127064 149..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127064.5445.1prot_M-pyrifera_M_contig127064.5445.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127064 149..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127064.5445.1

>prot_M-pyrifera_M_contig127064.5445.1 ID=prot_M-pyrifera_M_contig127064.5445.1|Name=mRNA_M-pyrifera_M_contig127064.5445.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MQTCDAIIERLAEEGAILSTGDAAMDGMMDGGVHCGAVTELCGPPGSGKS
QLCMRVAAETAVSGGTVAYLDTSSSLSVERLLHFCEPAVRKKCGDVDDAT
RRAELLRALHRVRHFRV
back to top

mRNA from alignment at M-pyrifera_M_contig127064:137..499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127064.5445.1 ID=mRNA_M-pyrifera_M_contig127064.5445.1|Name=mRNA_M-pyrifera_M_contig127064.5445.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig127064:137..499+ (Macrocystis pyrifera P11B4 male)
CACGCTGCGAGCATGCAGACGTGCGACGCAATTATCGAGCGGCTGGCTGA
AGAAGGAGCTATTCTGTCGACTGGAGACGCGGCAATGGATGGGATGATGG
ACGGTGGCGTGCACTGCGGCGCGGTGACGGAGTTGTGCGGGCCTCCAGGG
AGCGGCAAGTCGCAGTTGTGCATGCGTGTCGCGGCGGAGACGGCCGTGAG
TGGCGGGACAGTGGCGTACTTGGATACAAGCAGCAGCTTGTCGGTGGAGA
GGCTGCTGCACTTCTGTGAGCCTGCAGTGCGGAAGAAGTGCGGTGACGTG
GACGATGCTACTCGTCGCGCCGAGCTGCTGCGCGCGTTGCACCGAGTGAG
GCACTTCCGGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127064:137..499+

>mRNA_M-pyrifera_M_contig127064.5445.1 ID=mRNA_M-pyrifera_M_contig127064.5445.1|Name=mRNA_M-pyrifera_M_contig127064.5445.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig127064:137..499+ (Macrocystis pyrifera P11B4 male)
ATGCAGACGTGCGACGCAATTATCGAGCGGCTGGCTGAAGAAGGAGCTAT
TCTGTCGACTGGAGACGCGGCAATGGATGGGATGATGGACGGTGGCGTGC
ACTGCGGCGCGGTGACGGAGTTGTGCGGGCCTCCAGGGAGCGGCAAGTCG
CAGTTGTGCATGCGTGTCGCGGCGGAGACGGCCGTGAGTGGCGGGACAGT
GGCGTACTTGGATACAAGCAGCAGCTTGTCGGTGGAGAGGCTGCTGCACT
TCTGTGAGCCTGCAGTGCGGAAGAAGTGCGGTGACGTGGACGATGCTACT
CGTCGCGCCGAGCTGCTGCGCGCGTTGCACCGAGTGAGGCACTTCCGGGT
GATGCAGACGTGCGACGCAATTATCGAGCGGCTGGCTGAAGAAGGAGCTA
TTCTGTCGACTGGAGACGCGGCAATGGATGGGATGATGGACGGTGGCGTG
CACTGCGGCGCGGTGACGGAGTTGTGCGGGCCTCCAGGGAGCGGCAAGTC
GCAGTTGTGCATGCGTGTCGCGGCGGAGACGGCCGTGAGTGGCGGGACAG
TGGCGTACTTGGATACAAGCAGCAGCTTGTCGGTGGAGAGGCTGCTGCAC
TTCTGTGAGCCTGCAGTGCGGAAGAAGTGCGGTGACGTGGACGATGCTAC
TCGTCGCGCCGAGCTGCTGCGCGCGTTGCACCGAGTGAGGCACTTCCGGG
TG
back to top