mRNA_M-pyrifera_M_contig127062.5444.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127062.5444.1
Unique NamemRNA_M-pyrifera_M_contig127062.5444.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A8J6CB07_DIALT (Nascent polypeptide-associated complex subunit beta n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CB07_DIALT)

HSP 1 Score: 61.2 bits (147), Expect = 4.270e-10
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            MNQ KL +MA++VRTGGK SVRRK+K   ++  + D++L N LKRL+ N I  ++E+N+F
Sbjct:    8 MNQDKLKKMAESVRTGGKGSVRRKKKAIHKTTTTDDKRLQNTLKRLSCNNIPAIEEVNLF 67
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BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A7S3F108_9EUKA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F108_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 5.340e-10
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            MN+ KL++MA  VRTGGK SVRRK+K   ++  + D++L N LKRL  N I  ++E+N+F
Sbjct:   28 MNKEKLEKMAAQVRTGGKGSVRRKKKAIHKTTTTDDKRLQNTLKRLGVNNIPAIEEVNLF 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A6S7NFX0_LACSI (Nascent polypeptide-associated complex subunit beta n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7NFX0_LACSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.010e-9
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 YTEEARMNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            Y  +A+MN  KL +MA  VRTGGK SVRRK+K   ++  + D++L + LKR+  NAI  ++E+N+F
Sbjct:   21 YLIDAKMNVEKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A2G5F7X4_AQUCA (Nascent polypeptide-associated complex subunit beta n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F7X4_AQUCA)

HSP 1 Score: 58.9 bits (141), Expect = 1.370e-9
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            M+  KL +MA  VRTGGK S+RRK+K   ++N + D++L + LKRLN NAI  ++E+N+F
Sbjct:    1 MDVEKLKKMAGAVRTGGKGSIRRKKKAVHKTNTTDDKRLQSTLKRLNVNAIPAIEEVNIF 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A3N6QMN7_BRACR (Nascent polypeptide-associated complex subunit beta (Fragment) n=1 Tax=Brassica cretica TaxID=69181 RepID=A0A3N6QMN7_BRACR)

HSP 1 Score: 58.9 bits (141), Expect = 1.400e-9
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            MN+ KL +MA  VRTGGK +VRRK+K   ++N + D+KL + LKR+  N+I  ++E+N+F
Sbjct:    6 MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKKLQSTLKRIGVNSIPAIEEVNIF 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A0D3AQA9_BRAOL (Nascent polypeptide-associated complex subunit beta n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3AQA9_BRAOL)

HSP 1 Score: 60.5 bits (145), Expect = 1.840e-9
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 YTEEARMNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            Y    +MN+ KL +MA  VRTGGK +VRRK+K   ++N + D+KL + LKR+  N+I  ++E+N+F
Sbjct:   44 YKSNNKMNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKKLQSTLKRVGVNSIPGIEEVNIF 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A2P6NTS6_9EUKA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NTS6_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 1.940e-9
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            MN  KL+R+A  VRTGGK SVRRK+K   ++  + D+KL + LKRL  N IQ ++E+N+F
Sbjct:    1 MNVDKLNRLAAQVRTGGKGSVRRKKKAPHKATTTDDKKLQSTLKRLGVNPIQGIEEVNLF 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A078JHB7_BRANA (Nascent polypeptide-associated complex subunit beta n=4 Tax=Brassica TaxID=3705 RepID=A0A078JHB7_BRANA)

HSP 1 Score: 60.5 bits (145), Expect = 2.170e-9
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 YTEEARMNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            Y    +MN+ KL +MA  VRTGGK +VRRK+K   ++N + D+KL + LKR+  N+I  ++E+N+F
Sbjct:   58 YKSNNKMNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKKLQSTLKRVGVNSIPGIEEVNIF 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A2G5F7Y2_AQUCA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F7Y2_AQUCA)

HSP 1 Score: 58.9 bits (141), Expect = 2.730e-9
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            M+  KL +MA  VRTGGK S+RRK+K   ++N + D++L + LKRLN NAI  ++E+N+F
Sbjct:    1 MDVEKLKKMAGAVRTGGKGSIRRKKKAVHKTNTTDDKRLQSTLKRLNVNAIPAIEEVNIF 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Match: A0A2G5F7W4_AQUCA (Nascent polypeptide-associated complex subunit beta n=7 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F7W4_AQUCA)

HSP 1 Score: 58.9 bits (141), Expect = 2.940e-9
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   19 MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANAIQQVDEINMF 198
            M+  KL +MA  VRTGGK S+RRK+K   ++N + D++L + LKRLN NAI  ++E+N+F
Sbjct:    1 MDVEKLKKMAGAVRTGGKGSIRRKKKAVHKTNTTDDKRLQSTLKRLNVNAIPAIEEVNIF 60
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127062.5444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6CB07_DIALT4.270e-1051.67Nascent polypeptide-associated complex subunit bet... [more]
A0A7S3F108_9EUKA5.340e-1050.00Nascent polypeptide-associated complex subunit bet... [more]
A0A6S7NFX0_LACSI1.010e-946.97Nascent polypeptide-associated complex subunit bet... [more]
A0A2G5F7X4_AQUCA1.370e-950.00Nascent polypeptide-associated complex subunit bet... [more]
A0A3N6QMN7_BRACR1.400e-948.33Nascent polypeptide-associated complex subunit bet... [more]
A0A0D3AQA9_BRAOL1.840e-945.45Nascent polypeptide-associated complex subunit bet... [more]
A0A2P6NTS6_9EUKA1.940e-951.67Nascent polypeptide-associated complex subunit bet... [more]
A0A078JHB7_BRANA2.170e-945.45Nascent polypeptide-associated complex subunit bet... [more]
A0A2G5F7Y2_AQUCA2.730e-950.00Nascent polypeptide-associated complex subunit bet... [more]
A0A2G5F7W4_AQUCA2.940e-950.00Nascent polypeptide-associated complex subunit bet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127062contigM-pyrifera_M_contig127062:2..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.2252514-CDS-M-pyrifera_M_contig127062:1..1811622815784.2252514-CDS-M-pyrifera_M_contig127062:1..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127062 2..181 -
1692277567.8085976-CDS-M-pyrifera_M_contig127062:1..1811692277567.8085976-CDS-M-pyrifera_M_contig127062:1..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127062 2..181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.238344-UTR-M-pyrifera_M_contig127062:181..1991622815784.238344-UTR-M-pyrifera_M_contig127062:181..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127062 182..199 -
1692277567.8172588-UTR-M-pyrifera_M_contig127062:181..1991692277567.8172588-UTR-M-pyrifera_M_contig127062:181..199Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig127062 182..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127062.5444.1prot_M-pyrifera_M_contig127062.5444.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127062 2..181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127062.5444.1

>prot_M-pyrifera_M_contig127062.5444.1 ID=prot_M-pyrifera_M_contig127062.5444.1|Name=mRNA_M-pyrifera_M_contig127062.5444.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MNQAKLDRMAKNVRTGGKHSVRRKRKVTKRSNNSGDQKLNNVLKRLNANA
IQQVDEINMF
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mRNA from alignment at M-pyrifera_M_contig127062:2..199-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127062.5444.1 ID=mRNA_M-pyrifera_M_contig127062.5444.1|Name=mRNA_M-pyrifera_M_contig127062.5444.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig127062:2..199- (Macrocystis pyrifera P11B4 male)
TATACAGAAGAAGCTAGGATGAACCAGGCCAAGTTGGACAGGATGGCGAA
GAACGTCCGCACGGGCGGCAAGCACTCGGTGCGCAGGAAGAGGAAGGTGA
CGAAGCGCTCCAACAACTCCGGCGACCAGAAGCTCAACAACGTGCTCAAG
AGGCTCAACGCCAACGCCATCCAGCAGGTCGACGAGATCAACATGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127062:2..199-

>mRNA_M-pyrifera_M_contig127062.5444.1 ID=mRNA_M-pyrifera_M_contig127062.5444.1|Name=mRNA_M-pyrifera_M_contig127062.5444.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig127062:2..199- (Macrocystis pyrifera P11B4 male)
ATGAACCAGGCCAAGTTGGACAGGATGGCGAAGAACGTCCGCACGGGCGG
CAAGCACTCGGTGCGCAGGAAGAGGAAGGTGACGAAGCGCTCCAACAACT
CCGGCGACCAGAAGCTCAACAACGTGCTCAAGAGGCTCAACGCCAACGCC
ATCCAGCAGGTCGACGAGATCAACATGTTCATGAACCAGGCCAAGTTGGA
CAGGATGGCGAAGAACGTCCGCACGGGCGGCAAGCACTCGGTGCGCAGGA
AGAGGAAGGTGACGAAGCGCTCCAACAACTCCGGCGACCAGAAGCTCAAC
AACGTGCTCAAGAGGCTCAACGCCAACGCCATCCAGCAGGTCGACGAGAT
CAACATGTTC
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