mRNA_M-pyrifera_M_contig127038.5437.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127038.5437.1
Unique NamemRNA_M-pyrifera_M_contig127038.5437.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig127038.5437.1 vs. uniprot
Match: A0A5A8E8P1_CAFRO (Fucosyltransferase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8P1_CAFRO)

HSP 1 Score: 63.5 bits (153), Expect = 3.680e-9
Identity = 45/125 (36.00%), Postives = 60/125 (48.00%), Query Frame = 1 
Query:    7 KLNWQAEGAYVVKGCDVHCYITH-DQSKVQEADAVVMELVNHYKFFGTDTSLPLPWPERLPGKQR-------ASGLDQHWILFHYEARETCKNFLYDPSIMGHFQLTMTPDQSSDIPVSLICDWG 357
            +L W A+G  V K CD  C   H D +   +ADAVV+E VNH KF G D   P+PWP    G Q+       A GL+       Y+           P +  H   +M+   +S +PVSL+C WG
Sbjct:   19 RLLWAADGVEVNKPCDYPCKFVHGDPAVYHDADAVVVETVNHPKF-GHDGK-PMPWPV---GNQQTHTPLVGAFGLEPVEAYPRYQPTS--------PEMAAHASFSMSYLPTSTLPVSLMCPWG 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127038.5437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8E8P1_CAFRO3.680e-936.00Fucosyltransferase n=2 Tax=Cafeteria roenbergensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127038contigM-pyrifera_M_contig127038:83..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.8963017-CDS-M-pyrifera_M_contig127038:82..4841622815783.8963017-CDS-M-pyrifera_M_contig127038:82..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127038 83..484 -
1692277567.675626-CDS-M-pyrifera_M_contig127038:82..4841692277567.675626-CDS-M-pyrifera_M_contig127038:82..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127038 83..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127038.5437.1prot_M-pyrifera_M_contig127038.5437.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127038 83..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127038.5437.1

>prot_M-pyrifera_M_contig127038.5437.1 ID=prot_M-pyrifera_M_contig127038.5437.1|Name=mRNA_M-pyrifera_M_contig127038.5437.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
TTKLNWQAEGAYVVKGCDVHCYITHDQSKVQEADAVVMELVNHYKFFGTD
TSLPLPWPERLPGKQRASGLDQHWILFHYEARETCKNFLYDPSIMGHFQL
TMTPDQSSDIPVSLICDWGRQREDFLLPPPPRKV
back to top

mRNA from alignment at M-pyrifera_M_contig127038:83..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127038.5437.1 ID=mRNA_M-pyrifera_M_contig127038.5437.1|Name=mRNA_M-pyrifera_M_contig127038.5437.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig127038:83..484- (Macrocystis pyrifera P11B4 male)
ACGACCAAGCTCAACTGGCAGGCGGAAGGAGCCTACGTGGTGAAAGGATG
CGACGTCCACTGCTACATCACGCACGACCAGAGCAAGGTGCAGGAGGCAG
ACGCCGTGGTAATGGAGCTGGTCAACCACTACAAGTTCTTTGGAACCGAC
ACCTCCCTGCCGCTCCCTTGGCCTGAGAGGCTGCCAGGAAAGCAGCGAGC
AAGTGGCTTGGATCAGCACTGGATTTTGTTTCACTACGAGGCCAGAGAAA
CCTGCAAGAACTTCCTCTACGACCCTTCCATCATGGGTCACTTCCAACTC
ACCATGACACCCGACCAGAGCTCTGATATTCCTGTGTCGCTCATTTGTGA
CTGGGGAAGACAGCGAGAGGACTTTCTCCTGCCGCCTCCTCCCCGCAAGG
TG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127038:83..484-

>mRNA_M-pyrifera_M_contig127038.5437.1 ID=mRNA_M-pyrifera_M_contig127038.5437.1|Name=mRNA_M-pyrifera_M_contig127038.5437.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig127038:83..484- (Macrocystis pyrifera P11B4 male)
ACGACCAAGCTCAACTGGCAGGCGGAAGGAGCCTACGTGGTGAAAGGATG
CGACGTCCACTGCTACATCACGCACGACCAGAGCAAGGTGCAGGAGGCAG
ACGCCGTGGTAATGGAGCTGGTCAACCACTACAAGTTCTTTGGAACCGAC
ACCTCCCTGCCGCTCCCTTGGCCTGAGAGGCTGCCAGGAAAGCAGCGAGC
AAGTGGCTTGGATCAGCACTGGATTTTGTTTCACTACGAGGCCAGAGAAA
CCTGCAAGAACTTCCTCTACGACCCTTCCATCATGGGTCACTTCCAACTC
ACCATGACACCCGACCAGAGCTCTGATATTCCTGTGTCGCTCATTTGTGA
CTGGGGAAGACAGCGAGAGGACTTTCTCCTGCCGCCTCCTCCCCGCAAGG
TGACGACCAAGCTCAACTGGCAGGCGGAAGGAGCCTACGTGGTGAAAGGA
TGCGACGTCCACTGCTACATCACGCACGACCAGAGCAAGGTGCAGGAGGC
AGACGCCGTGGTAATGGAGCTGGTCAACCACTACAAGTTCTTTGGAACCG
ACACCTCCCTGCCGCTCCCTTGGCCTGAGAGGCTGCCAGGAAAGCAGCGA
GCAAGTGGCTTGGATCAGCACTGGATTTTGTTTCACTACGAGGCCAGAGA
AACCTGCAAGAACTTCCTCTACGACCCTTCCATCATGGGTCACTTCCAAC
TCACCATGACACCCGACCAGAGCTCTGATATTCCTGTGTCGCTCATTTGT
GACTGGGGAAGACAGCGAGAGGACTTTCTCCTGCCGCCTCCTCCCCGCAA
GGTG
back to top