mRNA_M-pyrifera_M_contig126958.5434.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126958.5434.1
Unique NamemRNA_M-pyrifera_M_contig126958.5434.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Match: A0A5A8CSX3_CAFRO (Hypothetical protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CSX3_CAFRO)

HSP 1 Score: 107 bits (268), Expect = 3.770e-26
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:  136 KSDDSQLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGEYVQDKAEDDE-----EDEDTPRKLV 360
            K+DDSQLVG W++G L  GKW++ DGTSWHGSF  NRP GRGVFYFPSGNMQ GEY++ K ED+E     E++  PR LV
Sbjct:  162 KADDSQLVGIWESGTLTTGKWVWADGTSWHGSFRGNRPFGRGVFYFPSGNMQDGEYLEKKGEDEEDGDGDEEDAAPRPLV 241
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BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Match: A0A482RDR9_9ARCH (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RDR9_9ARCH)

HSP 1 Score: 103 bits (258), Expect = 5.860e-26
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   19 GEWVGGKREVQGTYYYGNXXXXXXXXXXXXXXXXXXXXXKSDDSQLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGEYVQD 312
            G+W   K   +GTYYY N     XXXXXXXXXXXXXX  K+D+SQL+G W+ G   +GKW+ KDGTSWHG F + +P+GRGVFYFP+G MQ GEYVQ+
Sbjct:   20 GQWEHDKFHGEGTYYYKNGDIYSXXXXXXXXXXXXXXLFKADESQLIGRWERGSFVSGKWVMKDGTSWHGPFKDGKPLGRGVFYFPNGTMQEGEYVQE 117
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BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Match: A0A813BVE4_9DINO (Rsph1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BVE4_9DINO)

HSP 1 Score: 100 bits (250), Expect = 1.130e-23
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  142 DDSQLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGEYVQDKAEDDEEDEDTPRKLV 360
            D SQLVG+W+   + AG+W++KDGTSWHGSF NN+PIGRGVFYFP+GN Q G YV+   E D EDE+T  KLV
Sbjct:  164 DRSQLVGQWEDNAITAGQWLWKDGTSWHGSFKNNKPIGRGVFYFPNGNQQTGSYVE---EGDPEDEETELKLV 233
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BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Match: A0A6P6RU10_9EIME (radial spoke head 1 homolog n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P6RU10_9EIME)

HSP 1 Score: 57.4 bits (137), Expect = 3.010e-7
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:  151 QLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGEYVQ 309
            +L GEW AGQL  G WI++D TS+ G+F +++P G G++ FP+G   AG Y Q
Sbjct:  135 KLKGEWVAGQLVRGDWIWRDKTSYSGTFCDSKPQGEGLWRFPTGTEVAGVYSQ 187
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BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Match: A0A7S2CJK6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJK6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 8.920e-6
Identity = 31/102 (30.39%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:   34 GKREVQGTYYYGNXXXXXXXXXXXXXXXXXXXXXKSDDSQLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGEY--VQDKAEDDEE 333
            G +  QGTY YG+                       D S   GEW+  +   G+W   +  ++ G+F+N++PIG+G F F +G +Q GEY  +++  E +EE
Sbjct:    2 GMKHGQGTYEYGD-----------------------DKSIFDGEWEKNKFIKGEWKLYEAGTYTGTFTNDKPIGKGTFKFENGIIQNGEYKVIKETKEGEEE 80
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BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Match: A0A0G4I014_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I014_9ALVE)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-5
Identity = 20/52 (38.46%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  151 QLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGEYV 306
            + VGEW+ GQ+  G+W++K+G  + G+F +N+P   G + FP+G +  G+Y 
Sbjct:  130 KYVGEWEQGQMKKGRWVWKNGAQYVGTFKDNQPDSIGDWLFPNGTLLRGKYT 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126958.5434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8CSX3_CAFRO3.770e-2663.75Hypothetical protein n=3 Tax=Sar TaxID=2698737 Rep... [more]
A0A482RDR9_9ARCH5.860e-2661.224Fe-4S ferredoxin-type domain-containing protein n... [more]
A0A813BVE4_9DINO1.130e-2364.38Rsph1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A6P6RU10_9EIME3.010e-749.06radial spoke head 1 homolog n=1 Tax=Cyclospora cay... [more]
A0A7S2CJK6_9STRA8.920e-630.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4I014_9ALVE1.040e-538.46Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126958contigM-pyrifera_M_contig126958:148..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2e-13
Seed eggNOG ortholog4787.PITG_17167T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.6497512-CDS-M-pyrifera_M_contig126958:147..5071622815783.6497512-CDS-M-pyrifera_M_contig126958:147..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126958 148..507 -
1692277567.5222049-CDS-M-pyrifera_M_contig126958:147..5071692277567.5222049-CDS-M-pyrifera_M_contig126958:147..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126958 148..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126958.5434.1prot_M-pyrifera_M_contig126958.5434.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126958 148..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126958.5434.1

>prot_M-pyrifera_M_contig126958.5434.1 ID=prot_M-pyrifera_M_contig126958.5434.1|Name=mRNA_M-pyrifera_M_contig126958.5434.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
NGDIYHGEWVGGKREVQGTYYYGNGDLYSGSWVGDVKQGKGAYVYKSDDS
QLVGEWKAGQLDAGKWIFKDGTSWHGSFSNNRPIGRGVFYFPSGNMQAGE
YVQDKAEDDEEDEDTPRKLV
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mRNA from alignment at M-pyrifera_M_contig126958:148..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126958.5434.1 ID=mRNA_M-pyrifera_M_contig126958.5434.1|Name=mRNA_M-pyrifera_M_contig126958.5434.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig126958:148..507- (Macrocystis pyrifera P11B4 male)
AACGGTGACATTTACCACGGGGAGTGGGTGGGGGGGAAGCGAGAGGTGCA
AGGCACGTACTATTACGGCAACGGGGATTTGTACAGCGGGTCGTGGGTGG
GTGATGTGAAGCAGGGGAAAGGGGCTTATGTGTACAAATCGGATGATTCT
CAGCTTGTGGGCGAGTGGAAGGCAGGGCAATTGGATGCTGGCAAGTGGAT
TTTCAAAGACGGAACTTCGTGGCACGGCTCCTTCTCCAACAACCGGCCCA
TCGGAAGAGGAGTCTTCTACTTCCCGTCCGGCAACATGCAAGCCGGGGAG
TATGTCCAAGACAAAGCCGAAGACGACGAAGAAGACGAAGACACCCCCAG
GAAACTCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126958:148..507-

>mRNA_M-pyrifera_M_contig126958.5434.1 ID=mRNA_M-pyrifera_M_contig126958.5434.1|Name=mRNA_M-pyrifera_M_contig126958.5434.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig126958:148..507- (Macrocystis pyrifera P11B4 male)
AACGGTGACATTTACCACGGGGAGTGGGTGGGGGGGAAGCGAGAGGTGCA
AGGCACGTACTATTACGGCAACGGGGATTTGTACAGCGGGTCGTGGGTGG
GTGATGTGAAGCAGGGGAAAGGGGCTTATGTGTACAAATCGGATGATTCT
CAGCTTGTGGGCGAGTGGAAGGCAGGGCAATTGGATGCTGGCAAGTGGAT
TTTCAAAGACGGAACTTCGTGGCACGGCTCCTTCTCCAACAACCGGCCCA
TCGGAAGAGGAGTCTTCTACTTCCCGTCCGGCAACATGCAAGCCGGGGAG
TATGTCCAAGACAAAGCCGAAGACGACGAAGAAGACGAAGACACCCCCAG
GAAACTCGTCAACGGTGACATTTACCACGGGGAGTGGGTGGGGGGGAAGC
GAGAGGTGCAAGGCACGTACTATTACGGCAACGGGGATTTGTACAGCGGG
TCGTGGGTGGGTGATGTGAAGCAGGGGAAAGGGGCTTATGTGTACAAATC
GGATGATTCTCAGCTTGTGGGCGAGTGGAAGGCAGGGCAATTGGATGCTG
GCAAGTGGATTTTCAAAGACGGAACTTCGTGGCACGGCTCCTTCTCCAAC
AACCGGCCCATCGGAAGAGGAGTCTTCTACTTCCCGTCCGGCAACATGCA
AGCCGGGGAGTATGTCCAAGACAAAGCCGAAGACGACGAAGAAGACGAAG
ACACCCCCAGGAAACTCGTC
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