mRNA_M-pyrifera_M_contig12695.5431.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12695.5431.1
Unique NamemRNA_M-pyrifera_M_contig12695.5431.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A6H5K3J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.910e-15
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 PGVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGWELVQ 138
            PG GTI+AG    DLK V++G LQ+VTAP L+GW+WSILWGWEL Q
Sbjct:   13 PGAGTIVAGICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 58          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A6H5JZT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.820e-15
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    1 PGVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGWELVQ 138
            PG GTI+AG    DLK V++G LQ+VTAP L+GW+WSILWGWEL Q
Sbjct:   28 PGAGTIVAGICTFDLKNVLVGILQMVTAPILIGWVWSILWGWELWQ 73          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: D7FIX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIX6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.490e-14
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 PGVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGWELVQVA 144
            PG+GT+IAGFL C LK++  G LQLVT   +VGW+WS++WGWEL  +A
Sbjct:   30 PGLGTVIAGFLTCKLKSIFTGILQLVTTSLVVGWVWSVMWGWELWTLA 77          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A6H5JTL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.580e-12
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 GVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGWELVQVA 144
            GVGTII G LAC  +T+++G LQL T+  ++GW+WSI WGWEL++V+
Sbjct:   34 GVGTIIVGALACSCETLIVGLLQLFTSCIIIGWVWSIWWGWELLEVS 80          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A7S0UD76_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UD76_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 7.860e-9
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 PGVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGW 126
            PGVG+++AG +     TV+IG LQL+T  F++GWIWSI WGW
Sbjct:   51 PGVGSMVAGAMESKWSTVIIGVLQLITCWFILGWIWSIWWGW 92          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A7S0VWA5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VWA5_9CRYP)

HSP 1 Score: 55.5 bits (132), Expect = 2.860e-8
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 PGVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGW 126
            PGVG+++AG +     TV+IG LQL+T  F++GWIWSI WGW
Sbjct:   80 PGVGSMVAGAMESKWSTVIIGVLQLLTCWFILGWIWSIWWGW 121          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: UPI000711DF2D (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711DF2D)

HSP 1 Score: 52.8 bits (125), Expect = 8.500e-8
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    1 PGVGTIIAGFL---ACDLKTVVIGALQLVTAPFLVGWIWSILWG 123
            PG+GT+I G +    CD+   + G +QL+TAPF++GW+WSI+WG
Sbjct:   25 PGIGTMIGGLINAGGCDICIFLCGWVQLLTAPFIIGWVWSIIWG 68          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A1X6NY13_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NY13_PORUM)

HSP 1 Score: 50.1 bits (118), Expect = 1.210e-6
Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 PGVGTIIAGFLA-CDLKTVVIGALQLVTAPFLVGWIWSILWGWELVQVAGS 150
            PGV T++ G L+ CD++ ++IG LQL+  P ++GW+W+I WG++     G 
Sbjct:   28 PGVTTMVMGVLSSCDVEIILIGLLQLLLTPLIIGWVWAIYWGFKANNPLGE 78          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: A0A7E4UVX5_PANRE (Uncharacterized protein n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4UVX5_PANRE)

HSP 1 Score: 50.1 bits (118), Expect = 5.070e-6
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 1
Query:    1 PGVGTIIAGFLACDLKT---------------VVIGALQLVTAPFLVGWIWSILWGWELVQVA 144
            PGVGTIIA F  C  +T               ++ G LQL+ AP L+G+IWSILWG   +Q++
Sbjct:   74 PGVGTIIASFSTCSEETCFESDSPRVVLMYMNIITGMLQLMLAPLLIGYIWSILWGITFIQLS 136          
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Match: UPI000C6DD3D8 (protein stum homolog n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DD3D8)

HSP 1 Score: 50.4 bits (119), Expect = 6.040e-6
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 PGVGTIIAGF-LACDLKT------------VVIGALQLVTAPFLVGWIWSILWGWELVQVAGSRSI 159
            PG+GT+IA   + C  KT            ++ G LQL+TAP ++GW+WSI+WG   V ++ S+ +
Sbjct:  132 PGIGTLIASVTVLCGCKTEHANRAKAFGYNLLAGLLQLITAPVVIGWVWSIMWGITFVNISTSKDL 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12695.5431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K3J7_9PHAE1.910e-1567.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZT6_9PHAE2.820e-1567.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX6_ECTSI2.490e-1460.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JTL1_9PHAE1.580e-1257.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0UD76_HEMAN7.860e-957.14Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0VWA5_9CRYP2.860e-857.14Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
UPI000711DF2D8.500e-850.00hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
A0A1X6NY13_PORUM1.210e-641.18Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7E4UVX5_PANRE5.070e-642.86Uncharacterized protein n=1 Tax=Panagrellus redivi... [more]
UPI000C6DD3D86.040e-637.88protein stum homolog n=1 Tax=Centruroides sculptur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12695contigM-pyrifera_M_contig12695:6127..6291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue6.3e-10
Seed eggNOG ortholog2880.D7FIX6
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ectodermal ciliogenesis protein
EggNOG OGs2D0N5@1,2SESS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.5412154-CDS-M-pyrifera_M_contig12695:6126..62911622815783.5412154-CDS-M-pyrifera_M_contig12695:6126..6291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12695 6127..6291 -
1692277567.483849-CDS-M-pyrifera_M_contig12695:6126..62911692277567.483849-CDS-M-pyrifera_M_contig12695:6126..6291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12695 6127..6291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12695.5431.1prot_M-pyrifera_M_contig12695.5431.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12695 6127..6291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12695.5431.1

>prot_M-pyrifera_M_contig12695.5431.1 ID=prot_M-pyrifera_M_contig12695.5431.1|Name=mRNA_M-pyrifera_M_contig12695.5431.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
PGVGTIIAGFLACDLKTVVIGALQLVTAPFLVGWIWSILWGWELVQVAGS
RSIL*
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mRNA from alignment at M-pyrifera_M_contig12695:6127..6291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12695.5431.1 ID=mRNA_M-pyrifera_M_contig12695.5431.1|Name=mRNA_M-pyrifera_M_contig12695.5431.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig12695:6127..6291- (Macrocystis pyrifera P11B4 male)
CCAGGAGTGGGAACGATCATCGCCGGATTTCTCGCGTGCGACTTAAAAAC CGTCGTCATCGGCGCCCTTCAGCTAGTCACCGCCCCGTTCCTCGTGGGAT GGATCTGGTCCATCTTGTGGGGGTGGGAGCTGGTGCAGGTGGCGGGTAGC AGATCCATACTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12695:6127..6291-

>mRNA_M-pyrifera_M_contig12695.5431.1 ID=mRNA_M-pyrifera_M_contig12695.5431.1|Name=mRNA_M-pyrifera_M_contig12695.5431.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig12695:6127..6291- (Macrocystis pyrifera P11B4 male)
CCAGGAGTGGGAACGATCATCGCCGGATTTCTCGCGTGCGACTTAAAAAC
CGTCGTCATCGGCGCCCTTCAGCTAGTCACCGCCCCGTTCCTCGTGGGAT
GGATCTGGTCCATCTTGTGGGGGTGGGAGCTGGTGCAGGTGGCGGGTAGC
AGATCCATACTCTGACCAGGAGTGGGAACGATCATCGCCGGATTTCTCGC
GTGCGACTTAAAAACCGTCGTCATCGGCGCCCTTCAGCTAGTCACCGCCC
CGTTCCTCGTGGGATGGATCTGGTCCATCTTGTGGGGGTGGGAGCTGGTG
CAGGTGGCGGGTAGCAGATCCATACTCTGA
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