mRNA_M-pyrifera_M_contig126937.5427.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126937.5427.1
Unique NamemRNA_M-pyrifera_M_contig126937.5427.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A517M8V2_9BACT (Ankyrin repeats (3 copies) n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517M8V2_9BACT)

HSP 1 Score: 103 bits (258), Expect = 3.870e-25
Identity = 78/105 (74.29%), Postives = 78/105 (74.29%), Query Frame = 1
Query:    1 DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLDRTALMVTASGPNLEAVELLLSEGAKVNMRDSHEGWTXXXXXXXXXXXXXXXXXXXXXADKTLAEKDGE 315
            DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLD                           MRDSHEGWTXXXXXXXXXXXXXXXXXXXXXADKTLAEKDGE
Sbjct:  109 DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLDXXXXXXXXXXXXXXXXXXXXXXXXXXXMRDSHEGWTXXXXXXXXXXXXXXXXXXXXXADKTLAEKDGE 213          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A5B9QWN2_9BACT (Phosphocholine transferase AnkX n=2 Tax=Roseimaritima ulvae TaxID=980254 RepID=A0A5B9QWN2_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 7.290e-17
Identity = 47/111 (42.34%), Postives = 53/111 (47.75%), Query Frame = 1
Query:    1 DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLDRTALMVTASGPNLEAVELLLSEGAKVNMRDSHEGWTXXXXXXXXXXXXXXXXXXXXXADKTLAEKDGETALIFA 333
            DPDGQT LM AGFNGH +VMR LL+ GADVNH S L                            +RDSHEGWT                     ADK+LA+ DG+TAL FA
Sbjct:  113 DPDGQTPLMLAGFNGHLRVMRRLLDGGADVNHKSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDSHEGWTALMVAAVEGQAEIVAALLEAGADKSLADSDGDTALQFA 223          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A4Z1GLY1_9HELO (ZZ-type domain-containing protein n=1 Tax=Botrytis hyacinthi TaxID=278943 RepID=A0A4Z1GLY1_9HELO)

HSP 1 Score: 60.1 bits (144), Expect = 3.290e-8
Identity = 31/74 (41.89%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 DPDGQTALMFAGFNGHTKVMRLLLEHGADVN-HTSVLDRTALMVTASGPNLEAVELLLSEGAKVNMRDSHEGWT 219
            D DG++ L +A   G+T+ +++L+EHGA++   +S  ++TAL V A   NLE V+LLL+ GA++  +D+ +GWT
Sbjct:   66 DTDGESVLCYAVICGYTECVKVLIEHGAELEKRSSTYEQTALSVAAEKGNLEMVKLLLTCGARLEAQDT-DGWT 138          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A2V8L3T8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8L3T8_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-7
Identity = 38/108 (35.19%), Postives = 53/108 (49.07%), Query Frame = 1
Query:   10 GQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLDRTALMVTASGPNLEAVELLLSEGAKVNMRDSHEGWTXXXXXXXXXXXXXXXXXXXXXADKTLAEKDGETALIFA 333
            GQTALM+A  N H ++++LL+EHGADV   S  D T L+  A   ++E+   LL  GA VN     +  T                     A+  LA++ G TAL +A
Sbjct:   28 GQTALMWAAANKHPEIVKLLVEHGADVRARSKGDFTPLLFAAQQGDVESGRTLLGAGADVNENRRKDRMTALMVAAASGNNEFSVLLLEKGANPDLADEIGYTALHYA 135          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A4Z1HEJ9_9HELO (Uncharacterized protein n=1 Tax=Botryotinia narcissicola TaxID=278944 RepID=A0A4Z1HEJ9_9HELO)

HSP 1 Score: 56.2 bits (134), Expect = 8.470e-7
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTS-VLDRTALMVTASGPNLEAVELLLSEGAKVNMRDSHEGWT 219
            D DG + L +AG   +T+ +++L+EHGA++   S + ++TAL   A   NLE V+LLL  GA++  +D+ + WT
Sbjct: 1142 DTDGDSVLCYAGICRYTECVKILIEHGAELEKRSDMYEQTALSFAAKNGNLEIVKLLLDFGARIEAQDTDD-WT 1214          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: UPI0018FE9270 (uncharacterized protein n=1 Tax=Botrytis byssoidea TaxID=139641 RepID=UPI0018FE9270)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-6
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTS-VLDRTALMVTASGPNLEAVELLLSEGAKVNMRDSHEGWT 219
            D DG + L  A   G T+ +++L+EHGA++   S +  +TAL   A   NLE V+LLL+ GA+V+ +D+ +GWT
Sbjct: 1425 DNDGNSVLCHAVICGRTECVKVLIEHGAELEKMSGMYKQTALSFAAKKGNLEKVKLLLTSGARVDAQDT-DGWT 1497          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: C5GUP5_AJEDR (Uncharacterized protein n=5 Tax=Blastomyces TaxID=229219 RepID=C5GUP5_AJEDR)

HSP 1 Score: 54.3 bits (129), Expect = 2.540e-6
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   10 GQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLDRTALMVTAS---GPN-LEAVELLLSEGAKVNMRDSH 207
            G TAL  A  NGH +V+RLLL+HGA V+  S  +RT L +  +   GP+  E VELLL  GA  N R SH
Sbjct:   54 GLTALALAAKNGHIEVVRLLLDHGAQVDAASSQNRTPLWIVTTQGHGPHRAEIVELLLRRGA--NARSSH 121          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A7S3B0L4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B0L4_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 4.250e-6
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   43 GHTKVMRLLLEHGADVNHTSVLDRTALMVTASGPNLEAVELLLSEGAKVNMRD 201
            GH  V+ +LL+HGA++N T   + TAL   A G ++EAVE+L + GA +NM D
Sbjct:   34 GHPSVLHVLLDHGANINATRADESTALCDAAMGGHVEAVEILCTRGADINMPD 86          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A0A264W2F7_9BACL (Uncharacterized protein n=1 Tax=Tetzosporium hominis TaxID=2020506 RepID=A0A264W2F7_9BACL)

HSP 1 Score: 51.6 bits (122), Expect = 9.720e-6
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 DPDGQTALMFAGFNGHTKVMRLLLEHGADVNHTSVL-DRTALMVTASGPNLEAVELLLSEGAKVNMRDSH 207
            D DG+TALM A   G  ++++LLLEHG+DVN    L + +AL       + E V+LLL   A+V + D++
Sbjct:   30 DEDGRTALMEAVIEGDKEIVKLLLEHGSDVNKQDYLAEISALHFAVQNNSYELVKLLLDNQAEVEIEDAN 99          
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Match: A6R6D9_AJECN (Uncharacterized protein n=5 Tax=Histoplasma TaxID=5036 RepID=A6R6D9_AJECN)

HSP 1 Score: 52.4 bits (124), Expect = 1.060e-5
Identity = 36/70 (51.43%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   10 GQTALMFAGFNGHTKVMRLLLEHGADVNHTSVLDRTAL-MVTASGPN---LEAVELLLSEGAKVNMRDSH 207
            G TAL  A  NGH +V+RLLL HGA V+  S  +RT L +VT  G      E VELLL  GA  N R SH
Sbjct:   28 GLTALALAAKNGHVEVVRLLLNHGAQVDANSSQNRTPLWIVTTQGRGSRRAEVVELLLQRGA--NARFSH 95          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126937.5427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A517M8V2_9BACT3.870e-2574.29Ankyrin repeats (3 copies) n=1 Tax=Roseimaritima m... [more]
A0A5B9QWN2_9BACT7.290e-1742.34Phosphocholine transferase AnkX n=2 Tax=Roseimarit... [more]
A0A4Z1GLY1_9HELO3.290e-841.89ZZ-type domain-containing protein n=1 Tax=Botrytis... [more]
A0A2V8L3T8_9BACT1.100e-735.19Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A4Z1HEJ9_9HELO8.470e-739.19Uncharacterized protein n=1 Tax=Botryotinia narcis... [more]
UPI0018FE92701.170e-641.89uncharacterized protein n=1 Tax=Botrytis byssoidea... [more]
C5GUP5_AJEDR2.540e-650.00Uncharacterized protein n=5 Tax=Blastomyces TaxID=... [more]
A0A7S3B0L4_9EUKA4.250e-647.17Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A264W2F7_9BACL9.720e-641.43Uncharacterized protein n=1 Tax=Tetzosporium homin... [more]
A6R6D9_AJECN1.060e-551.43Uncharacterized protein n=5 Tax=Histoplasma TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126937contigM-pyrifera_M_contig126937:118..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.3068473-CDS-M-pyrifera_M_contig126937:117..4351622815783.3068473-CDS-M-pyrifera_M_contig126937:117..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126937 118..435 -
1692277567.369035-CDS-M-pyrifera_M_contig126937:117..4351692277567.369035-CDS-M-pyrifera_M_contig126937:117..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126937 118..435 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.3224475-UTR-M-pyrifera_M_contig126937:435..4591622815783.3224475-UTR-M-pyrifera_M_contig126937:435..459Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126937 436..459 -
1692277567.378537-UTR-M-pyrifera_M_contig126937:435..4591692277567.378537-UTR-M-pyrifera_M_contig126937:435..459Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig126937 436..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126937.5427.1prot_M-pyrifera_M_contig126937.5427.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126937 118..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126937.5427.1

>prot_M-pyrifera_M_contig126937.5427.1 ID=prot_M-pyrifera_M_contig126937.5427.1|Name=mRNA_M-pyrifera_M_contig126937.5427.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MFAGFNGHTKVMRLLLEHGADVNHTSVLDRTALMVTASGPNLEAVELLLS
EGAKVNMRDSHEGWTALMIAATEGQTEIVKRLLASGADKTLAEKDGETAL
IFAKNQ
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mRNA from alignment at M-pyrifera_M_contig126937:118..459-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126937.5427.1 ID=mRNA_M-pyrifera_M_contig126937.5427.1|Name=mRNA_M-pyrifera_M_contig126937.5427.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig126937:118..459- (Macrocystis pyrifera P11B4 male)
GATCCCGATGGGCAAACCGCGTTGATGTTCGCTGGCTTTAATGGGCACAC CAAAGTGATGCGTTTACTGCTGGAACATGGGGCGGATGTCAATCACACCA GCGTCCTTGATCGGACGGCATTGATGGTGACCGCGAGCGGCCCGAACCTA GAAGCCGTTGAACTACTGCTCAGCGAAGGAGCCAAAGTCAACATGCGGGA TAGTCATGAAGGTTGGACGGCATTGATGATCGCCGCAACCGAGGGGCAGA CCGAAATTGTCAAACGCCTATTAGCCAGTGGTGCCGACAAAACCTTGGCA GAGAAAGATGGTGAAACCGCTCTTATCTTTGCCAAAAACCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126937:118..459-

>mRNA_M-pyrifera_M_contig126937.5427.1 ID=mRNA_M-pyrifera_M_contig126937.5427.1|Name=mRNA_M-pyrifera_M_contig126937.5427.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig126937:118..459- (Macrocystis pyrifera P11B4 male)
ATGTTCGCTGGCTTTAATGGGCACACCAAAGTGATGCGTTTACTGCTGGA
ACATGGGGCGGATGTCAATCACACCAGCGTCCTTGATCGGACGGCATTGA
TGGTGACCGCGAGCGGCCCGAACCTAGAAGCCGTTGAACTACTGCTCAGC
GAAGGAGCCAAAGTCAACATGCGGGATAGTCATGAAGGTTGGACGGCATT
GATGATCGCCGCAACCGAGGGGCAGACCGAAATTGTCAAACGCCTATTAG
CCAGTGGTGCCGACAAAACCTTGGCAGAGAAAGATGGTGAAACCGCTCTT
ATCTTTGCCAAAAACCAAATGTTCGCTGGCTTTAATGGGCACACCAAAGT
GATGCGTTTACTGCTGGAACATGGGGCGGATGTCAATCACACCAGCGTCC
TTGATCGGACGGCATTGATGGTGACCGCGAGCGGCCCGAACCTAGAAGCC
GTTGAACTACTGCTCAGCGAAGGAGCCAAAGTCAACATGCGGGATAGTCA
TGAAGGTTGGACGGCATTGATGATCGCCGCAACCGAGGGGCAGACCGAAA
TTGTCAAACGCCTATTAGCCAGTGGTGCCGACAAAACCTTGGCAGAGAAA
GATGGTGAAACCGCTCTTATCTTTGCCAAAAACCAA
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