mRNA_M-pyrifera_M_contig126917.5424.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126917.5424.1
Unique NamemRNA_M-pyrifera_M_contig126917.5424.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126917.5424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126917contigM-pyrifera_M_contig126917:4..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815783.1901314-CDS-M-pyrifera_M_contig126917:3..2551622815783.1901314-CDS-M-pyrifera_M_contig126917:3..255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126917 4..255 +
1692277567.3208284-CDS-M-pyrifera_M_contig126917:3..2551692277567.3208284-CDS-M-pyrifera_M_contig126917:3..255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126917 4..255 +
1622815783.201979-CDS-M-pyrifera_M_contig126917:321..5071622815783.201979-CDS-M-pyrifera_M_contig126917:321..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126917 322..507 +
1692277567.3301396-CDS-M-pyrifera_M_contig126917:321..5071692277567.3301396-CDS-M-pyrifera_M_contig126917:321..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126917 322..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126917.5424.1prot_M-pyrifera_M_contig126917.5424.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126917 4..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126917.5424.1

>prot_M-pyrifera_M_contig126917.5424.1 ID=prot_M-pyrifera_M_contig126917.5424.1|Name=mRNA_M-pyrifera_M_contig126917.5424.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
WTVFPSQNPVVLGPSSCHPGRILAPVVLSDKSHARASDAPANVSGFFATE
KHASVLISDDSGITWTPSPGAIMPNRSWSQWEPTSGLLGSSDVSYSSSSG
RVLMLDRNNDNRLVGEGGPVPWNRLEWAVSEDCGETWGQLESVPVD
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mRNA from alignment at M-pyrifera_M_contig126917:4..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126917.5424.1 ID=mRNA_M-pyrifera_M_contig126917.5424.1|Name=mRNA_M-pyrifera_M_contig126917.5424.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig126917:4..507+ (Macrocystis pyrifera P11B4 male)
TGGACTGTTTTTCCTTCTCAGAATCCAGTTGTTCTTGGACCTTCTTCTTG
TCACCCAGGTCGCATCCTAGCACCTGTTGTGCTCTCTGATAAATCACACG
CGCGTGCTTCTGATGCCCCAGCAAATGTTAGTGGCTTTTTTGCTACAGAG
AAGCACGCATCCGTCCTCATTAGCGACGACAGCGGAATCACATGGACGCC
TTCTCCAGGCGCAATCATGCCAAATCGATCCTGGAGTCAATGGGAACCCA
CCGTATTTCCCTTGCATTCCCCAACCTCTGAGGCCGCGAATGGAAGAGGA
TGTGGGAAAGTGGGAAAGAGTGGTTTGTTGGGATCGTCAGATGTATCTTA
TTCATCTTCATCGGGGCGTGTTTTGATGCTGGATCGCAACAATGACAATC
GGTTGGTGGGTGAAGGGGGACCGGTGCCGTGGAATCGTCTGGAGTGGGCT
GTGAGTGAAGACTGTGGAGAGACGTGGGGGCAGTTGGAGTCTGTGCCAGT
GGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126917:4..507+

>mRNA_M-pyrifera_M_contig126917.5424.1 ID=mRNA_M-pyrifera_M_contig126917.5424.1|Name=mRNA_M-pyrifera_M_contig126917.5424.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig126917:4..507+ (Macrocystis pyrifera P11B4 male)
TGGACTGTTTTTCCTTCTCAGAATCCAGTTGTTCTTGGACCTTCTTCTTG
TCACCCAGGTCGCATCCTAGCACCTGTTGTGCTCTCTGATAAATCACACG
CGCGTGCTTCTGATGCCCCAGCAAATGTTAGTGGCTTTTTTGCTACAGAG
AAGCACGCATCCGTCCTCATTAGCGACGACAGCGGAATCACATGGACGCC
TTCTCCAGGCGCAATCATGCCAAATCGATCCTGGAGTCAATGGGAACCCA
CCTGGACTGTTTTTCCTTCTCAGAATCCAGTTGTTCTTGGACCTTCTTCT
TGTCACCCAGGTCGCATCCTAGCACCTGTTGTGCTCTCTGATAAATCACA
CGCGCGTGCTTCTGATGCCCCAGCAAATGTTAGTGGCTTTTTTGCTACAG
AGAAGCACGCATCCGTCCTCATTAGCGACGACAGCGGAATCACATGGACG
CCTTCTCCAGGCGCAATCATGCCAAATCGATCCTGGAGTCAATGGGAACC
CACCAGTGGTTTGTTGGGATCGTCAGATGTATCTTATTCATCTTCATCGG
GGCGTGTTTTGATGCTGGATCGCAACAATGACAATCGGTTGGTGGGTGAA
GGGGGACCGGTGCCGTGGAATCGTCTGGAGTGGGCTGTGAGTGAAGACTG
TGGAGAGACGTGGGGGCAGTTGGAGTCTGTGCCAGTGGACAGTGGTTTGT
TGGGATCGTCAGATGTATCTTATTCATCTTCATCGGGGCGTGTTTTGATG
CTGGATCGCAACAATGACAATCGGTTGGTGGGTGAAGGGGGACCGGTGCC
GTGGAATCGTCTGGAGTGGGCTGTGAGTGAAGACTGTGGAGAGACGTGGG
GGCAGTTGGAGTCTGTGCCAGTGGAC
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